Array 1 10424-9950 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJKL01000002.1 Couchioplanes caeruleus strain DSM 43634 Ga0197494_12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 10423 37 94.6 38 ................C...T................ CAGTCGAGCAGCCGAAACATCTCGACGGCCCGCGTGGT 10348 32 86.5 37 ..............-----.................. CCCCGAGGCAAGGTCCACGTGTCCACCGCCGCTGGTG 10279 37 100.0 37 ..................................... GTCGTCTACCGCCCGGCCGCGTTCGCGACCGTGACCG 10205 37 97.3 35 ................C.................... GGCTTGTAGGCGCCGTTGCGGGTCAGGTCGACCCG 10133 37 97.3 36 ..........A.......................... GCCACCCTCGGCGGCGCCCCGTGGGTCATCACCCGG 10060 37 94.6 36 ................G...T................ GCGACCTGCCACCCCATGCGGAACGTCAGGCGGATC C [10047] 9986 37 97.3 0 .........................A........... | ========== ====== ====== ====== ===================================== ====================================== ================== 7 37 95.4 37 GCTGCGCCCGGCCACCAGGCCGGGCGAGGATCGCAAC # Left flank : GCATCCAGGCTGTGCCACCCCCCACCCAGGGCAGGGCTATGCGCCCACAACGGCGTACCACTAGACACGAATAGTCCTCAATCCACGGTTTGCCGCATCTGAGCCCGTCCATCCCGCCACGCCGAAACACCCACCGTCAATGTCAGATAGCCACCAGTAGCAGTTCGCGCTAGCTGGGCTGCCGCACTCTGGTCGGGATCGAGCACGCGCCGGACCCTATCGCCACCGTGTGACACTTCGACGCGAGCCGACTACTCCTGGTGATCCACTGCGCGACCCGCCCTGTCTATCGACGCCGACATCCGCACGGGCACCAGCCTCAGTAAGCGCACCAAGGACACCGAGCGCATGAACCAGGGCCTTCCCAACCTAGGAACCTCCGGTGACCGCCGCACGAGCTGTCGGTTCCTCACCACGAAAAGCCCCTAAAATAAGGCGAAGAAGACACGCACCTGTCCGCGCCCGAACACCAGAACGGCCATACAGGCAGCTCACGAACC # Right flank : GTCAGCGTGGAGACCAACGCCCGGCCCGGACGCGGTCGCCGCCCACGTCGCCCGCCGCCCGCACTTCTAGCTCCGGCCCGGTGCACCCGAGGTCGCGCGCCGGACTTCGTCCTGCCTGAACAAAGTAGGCCCTCGCCGACGAAACGGGGAGGGCCTATGGACCTACACAGGCGATGCCACAACCTGAACCTCGAACGTCGCGATCGGCCGATCACACGACACGCAGCGCAGCGCGTAATGGGCAAGCCGTTCCACCTCGCCGACAAGCTGGAGTGAGTGATCCCGGTGACCCAGGCGGCCGGCGAGCCGGGCAGCTGCCGACCAGAACCGTTCGTCCGCGAACTCCCGTTCGGCCACCAAGTGATGCGGCACCGGATCCGCCATGCCACCGGCAATCATCGGCTCGTACCCGCGTCGAGGTGCTGCTCGTGGCCCGGTCGCGCCAGCTCGTGCCGGGCCGCGGTGACACAGGGCGCCCCGCTCTGCGACCGGGCCGCGGC # Questionable array : NO Score: 5.37 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.34, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGCGCCCGGCCACCAGGCCGGGCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCTGCGCCCGGCCACCGCGCCGGGCGAGGATCGCAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-20.00,-19.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [18.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 16547-17892 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJKL01000002.1 Couchioplanes caeruleus strain DSM 43634 Ga0197494_12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================================================================ ================== 16547 37 78.4 39 CAG.........CGT....TG................ GGCAACGCGTACCGCCCAGGCGAACCAAAATGACATGGG 16623 37 89.2 38 .T........A.C.T...................... TGCGTCGCCTGCTCCGCGGCCGCCGTACCCGTCGTCAG T [16642] 16699 37 73.0 36 A...G..GG...G...T...T....A.........CT TCCTCTACACCCAAACTTGGTGTGCGTCCTCGAGCA 16772 37 91.9 35 .............TT.............T........ GAGGTATGAGGAAACGCCATGCCCCTACTGCAGGA 16844 37 91.9 37 ............C....A.....A............. TGGGGCATCCCGTTGGCCCCGTACACGGCCCTGCATG 16918 37 94.6 35 ......T.....C........................ TTTCGATCGAGATCACTGTTAGGGGGATCCCGCAC 16990 37 86.5 36 ..........A.C.TT.A................... CTCCGCGGCTATGAGCAGCCCGCCCTGTACGAGAAG 17063 37 100.0 96 ..................................... TTCGGCCCCGATGGTGTGTTCGAGCTGTGAGCGAGCACTGTGCCTGGCTCGCCAGCCGGGCGAGGATCGCAACTCGGCTTGTTGACCAGCCCGGCC GC [17083] 17198 37 89.2 35 ............CGT........A............. ATCTGGTGGCACGCCACCGGCAAGGCCACCGGCAG 17270 37 86.5 35 ..........A.C.TT.A................... TACCAGCGCCCGCTGACGCTGCGCGACATCGTCGG 17342 37 94.6 35 ..........A.C........................ GACAAGCAAGTGTCCGCGGTCAAGGCCGCTACACA 17414 37 89.2 39 C...........C.....C....C............. TTCGAGGAACCGCTGGCGAAGACGGGCGCCACCGGGCGG 17490 36 91.9 39 ......-.....C..........A............. AGCCAGGCGTTAGCAGGTTTGCTGTGCTGAGTCCGCGCG 17565 37 97.3 35 ............C........................ CAGATCAACATTTCCTGGATCCACCCCCGCGTGAC 17637 37 89.2 38 .........A..C.......TC............... GGCTCCGTCGAGCCGACCCGCTCCGACACCACGCTCGA 17712 36 81.1 37 ........T...CGT.....-C...C........... ATCTGGCCGTGCCCTCACTGCGGCGGCCGCTCGCCGC 17785 37 94.6 35 ............C..A..................... ACGTTCAAGGTGTTGCTCCCGCATCAGAGGTACGT 17857 36 86.5 0 ............C...G..G.-...A........... | ========== ====== ====== ====== ===================================== ================================================================================================ ================== 18 37 89.2 40 GCTGCGCCCGGCTACCAGGCCGGGCGAGGATCGCAAC # Left flank : TCCGCGGCCCAATGCAACTCACCTTTGCCCGCAGCCTCGACGCGATCCTGCCCACCGACCACGCCATCACCCGCGTCACCCCCACCCGTCCCGAAGACCTCGCCGCCGGCAAGGTCACCGAGATGGGCTCCAAATGGACCGTGCCCTACGGGCTGTACCGCGCCCACGCCTTCTTCTCCGCCCCCCGCGCTACAAAAACCGGCGTCACCAGCGACGACATGGCCACCCTCTGGCAAGCCCTCACCGTCATGTTCGACCACGACCGCGCCGCATCACGCGGCGAAATGAAACTCTGCGGCCTGTACATCTTCAACCACCCCGACCCCCTTGGCGTCGCCCCCGCCGCGACCCTCACCAGCCGGATCACGCTGTACCGCGCCAACCCCGACAAAGCACCACGCCAACACACCGACTACACCCGCAGCATCGACACCACCGACCTGCCTACCGGCGTCGAATTCACCCCACTGGTCGACCTCTGGCCATGATGGCTCCACACG # Right flank : CGCGCAGTGCTGCCGGTAGCGTTCGCCCCCATGCCTCGGTTGCGCCCGGTCACCAGGCCGAGTGTCCGAAAATCGACCGTTTCCCGGACAAGATCAAGAACTGGCTCAGGCGGCGATCAGGGCCGTCTGTGTGATCTTCGACGGTATGTGGCGGCGAACTTTCGGGGGTTCGTGGCGTGACCACAGGGCGTGCGACTGGACGTTGAGATCGTTGTCATAGCGCCCTCCGTGCTGTGCGGGCACGGTGATGTGATGACGACAGCTCAGTGGTATCAGGCGTTTGCGGTTCGTGAGGCGCGGGGCCAGTCGCCGACGTACGAGGCGCTGGCCTTGGCGGTTGGTGCAGACCAGCAGGTGTTGGGACTCCTGGATGGGTTGCCGGAGGAGAAGCGGCAGCCGAACCTGCTCCTTGCCGCGGCTCAGTACCTTGGTGCGCCGCTCGGCGCTCCGGATGACTTCCTGGACTGGGTCCTGCAGAACTGGTCGGCGTTGTCCGCCAC # Questionable array : NO Score: 2.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.41, 5:-1.5, 6:0.25, 7:-0.68, 8:1, 9:0.25, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGCGCCCGGCTACCAGGCCGGGCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCTGCGCCCGGCCACCGCGCCGGGCGAGGATCGCAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.20,-12.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [21-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //