Array 1 18078-20489 **** Predicted by CRISPRDetect 2.4 *** >NZ_VYVL01000012.1 Lactobacillus jensenii strain UMB8651 NODE_12_length_47654_cov_14.691481, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 18078 36 100.0 30 .................................... GAGTATCTCAGTTACTGCTAATCACATTGC 18144 36 100.0 30 .................................... TGACGCTGAGAATGGCTCGCACAAGATTAC 18210 36 100.0 30 .................................... TAGATGTGCAGTACTTCTGTTACGACCAGT 18276 36 100.0 30 .................................... CTCCAGTTTCGATTGCTGTTAATATGAAGT 18342 36 100.0 30 .................................... TAGGAAAAGCTATTGCTCAAGTCGCTGTTT 18408 36 100.0 30 .................................... CGGCTACTAAAGGTCTCTTTACCCAAACCG 18474 36 100.0 30 .................................... AGTCGTCTAATCTATCGTCATCGTCTTGCT 18540 36 100.0 30 .................................... TGTTTATCGTGGCCGAAGTTCTGAAGACTT 18606 36 100.0 30 .................................... GAGTGAGGAGATTAGCCATTACGAAAAACA 18672 36 100.0 30 .................................... CGCCAAGTGTAGCGAACCACAAGCCGTTAG 18738 36 100.0 30 .................................... TCCTTCAGCAGTAGTAGTTGAACTTGCACT 18804 36 100.0 30 .................................... TGAATTAGATATGAGAGACAAATTGAAAGG 18870 36 100.0 30 .................................... TTAGGCAGGCTATTAAAAGAGGTCGTACTG 18936 36 100.0 30 .................................... CCTTAATTGCTGCAATTGCAACAATTGCTT 19002 36 100.0 30 .................................... CTAGGCGTATGCCCTGTGTGATATTCCTTG 19068 36 100.0 30 .................................... AGATGACTTTACATTCCTAGCAACAATCAC 19134 36 100.0 30 .................................... TGATAAGTTTCCCGAGACTAACGTTGACAA 19200 36 100.0 30 .................................... TCTTGATTTCACGAGTTAACATTGGTTGAT 19266 36 100.0 30 .................................... ATTAGGATACTGTGTAGGATATACCTTCCA 19332 36 100.0 30 .................................... TTGTAAAATTTGTGATAATGATTTTCGTGT 19398 36 100.0 30 .................................... TTCCAATGGTGAAACAAGAGTTATCAAATA 19464 36 100.0 30 .................................... TGTTGCAAGCGCCGACCCTTATGGTGGTAT 19530 36 100.0 30 .................................... AGTAGCTCAACAACTTCAAAGCGAAGTGGG 19596 36 100.0 30 .................................... TTTTTGAGCTGTTTTATCGAGCCAAGAAGG 19662 36 100.0 30 .................................... GGATACTGGCAGGCCTTCCATTTATCAGTT 19728 36 100.0 30 .................................... TGTTTAAAGTAGTAAACAAGACTATTGAGC 19794 36 100.0 30 .................................... TGTTTAAAGTAGTAAACAAGACTATTGAGC 19860 36 100.0 30 .................................... CTCTATTTTAATCTGCATACATACATGTAA 19926 36 100.0 30 .................................... AAGACAATACGTAATAAGGATATTGCACAA 19992 36 100.0 30 .................................... AATATATCAAGCCTGAAGCATTAGATGGCT 20058 36 100.0 30 .................................... CTAAAGCTTTTTCAGCATCATTTTTAGTGT 20124 36 100.0 30 .................................... AAATTTTTGCAGGAAATTGCCGATGAGCTA 20190 36 100.0 30 .................................... GGCTAAAGACAATAAGATTAATGTTTCTAA 20256 36 100.0 30 .................................... ACTACCAGAATGGGCAGTTGCAGAAAAGAT 20322 36 100.0 30 .................................... GAAAACTTGAAGTCGCAACTCAATAGCGAG 20388 36 100.0 30 .................................... AAAAGTAGTCGATGAATATTTAAGGTTAGT 20454 36 97.2 0 ...................................A | ========== ====== ====== ====== ==================================== ============================== ================== 37 36 99.9 30 GTTTTAGAAGGTTGTTAAATCAGTAAGTTGAAAAAC # Left flank : CACAGGATTATCTTAATTCTTATCAGAATAAGATTATTTCAAATCTGTTTGATACTTTAAATGAAAATCAGAGAAATAAAATATTTAATACGTGGCGTCAGCTGAGTACTGATATTCAAGATATAATATTTATGACTGATTTACCAATTGAAGTTGGTGAAAATCTAGATTTAAAGAAGCTATTCAAATTTGATGGAATTCATTTTGATGATTCTGTATTAAGTGATCCTTATGCTATAATTGAAACAGTTGTTAAAATTCATATTGAATGTAAATTGAATTCGGTTGTTACTTTTGCAAACGTAAGTCATTATCTTACAAAAGAACAATTGAATAACTTAATTACCTTTATAAACGAAGTAAATATGCCTTTGATATTAATAGAATTTTCATCTTCAGATTTTAAGGTTGTTAGTGGGGATGCAAGAGTCTGTTATATTGATGAGGATTTTGTCGACTGGTACTGATTTTAAATCTGAGAAGCTGATGATAAAATGTCG # Right flank : AGTAACAAAAACCAATTTAATTAATATGATCATATTTTAATTTGAGGAGAAAACTAAGTATGTGGACATTTCTTAAATTTTTTCAGACACCAGTAGGCTATTTAATTGGAATGGCTATTCTTGTCATATTGCAATACGTGTATGAATGGATAAGAGACGAGCGCTAAAATATTGTTTGGTTTATTGGCAATTAATATACTTTAGAAAGCTGCAAAACACTATAACTTATAGGAGATAAAAATGGAAGGTTTAGCATATGTTATTCTATTTATAGGAGCTTTTATATATTACTATTGTAAAAATAACCGTAAAAAATAATACGATTTTTAAAAGTTACTGAGGGGGCATAATATGGATGCAATTATTGATTTCTTTACTAACCCTATATGGATTACATTTATAACAATTTTATATTTTTCTATGGAGTTTATAGAAAATAAGCGAAAAAAATAGCGCTTTTTTATTGGTAAAGTAATAACAATTATGTCAGTTTTAAAAGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAAGGTTGTTAAATCAGTAAGTTGAAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTTTAGAAGGTTGTTAAATCAGTAAGTTGAAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //