Array 1 6064057-6065142 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHJW010000001.1 Micromonospora polyrhachis strain DSM 45886 Ga0436963_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 6064057 37 97.3 37 ............A........................ TCCATCCTCAAGGGTGGAGCCCGTAAGAGCACGTCCG 6064131 37 100.0 37 ..................................... CTGGTAGTCCGCGGCGGCCTGGTTGTAGATCTCCTTC 6064205 37 100.0 39 ..................................... GGTCAGCACGGTCACGGCTCCGTCCTCGCTGACCGCGAT 6064281 37 100.0 38 ..................................... CGATGGGCCCCTGCACCGGGGAATCTTGGCGGATGGTC 6064356 37 100.0 39 ..................................... TCGAAGTGAGTTAACTGTTCTCGGCTGAGCTTGCACGGG 6064432 37 100.0 37 ..................................... ATCCAACACCACCCTCTCGTCACCGACACCTGCGAAA 6064506 37 100.0 37 ..................................... GGCTGGCGGCGTTGGTTGGCGTACCCCCGGCCAACCT 6064580 37 100.0 38 ..................................... GGCTTCTACGCACCGAAGGCCGAGGTGTACCGCAACGA 6064655 37 100.0 36 ..................................... GTGGCCAGCGGCGTCAGCAACATGCGGGCCAACTTT 6064728 37 97.3 40 ..................A.................. TGGTTTCGCGACAGCTCACCCGTGCCGCCGCCGTCCACGC 6064805 37 100.0 38 ..................................... CCACGCCATCCGCAATCCCACGATCAGGACCGCGCCGA 6064880 37 97.3 38 ..................C.................. TTGGTTACCCGCCCGTACTTGTCGACTACCTCAGCGGC 6064955 37 100.0 38 ..................................... GGCGGCTTCGCGTGCTCGCTGGGCGAGGCGGGCGCGGG 6065030 37 97.3 39 .....G............................... CGTCGGCATGGCCCCCGAGGTCACCTACGGCACCTACGT 6065106 37 94.6 0 .................................G..T | ========== ====== ====== ====== ===================================== ======================================== ================== 15 37 98.9 38 CCAACACCGGCCGAACCTGGCCGGTCTCCATTGCGAC # Left flank : CGTCGTTACGCACCTGATGGGGCACCCTGCTCTCGAACGCCACCACCTCCCCGGGCCGCACCACCGTCGCCTGGTCGTCGGCCCAGGTCAGGATGCCGACCCCGGAGACGACGATCCACACCTCACGCGACCGGTGTACGTCCAGGTCGTTCGACGTTCCCGGAGCGACCGACCAGCGGGCGACCTCGAACGGGGCAGGTGCCTCCGCCGGGTACGGAAGCAGCGCCCGGTGCACGGGTCCGCCCTCGCTGAAGTCGTACCAGTGCTCGAACTCGACAGGGCCGCTGGTCGTGGCCAGGTTGGTGCTCGACATGCCGTCCAGGTTGCCGACCACCGGGCTCGTACGTCTGGCGGCAATCGGACGCAGCGTTACCCGAGGCAGGGCAGACGGCGGCTTGCTGCCGAGAGTTGACGAGTAAGCTACGTCGATAGCCGTCGGGTAGCCGTTCGTTAACATATGAAGAGAGATGCCCGATCTGTCGCCTCGCTTCGGAACCCCG # Right flank : TTCGCTTGTGTAGACGCCGATGCGGAAGCCCGTTGCCCGGTCATAACTGATCTTGACCGCTCATTCTCCGCTCGTGGCCTCGCAGGCACGTGCAGGGAGTTTGTCGTACCCGTCAGGTAGGTGTTCCAATGCCATCAAAGTTGACGGGAGTGATCATGTCTGGGCTTGTTGATCGTCTTATCTCGGCGGTTGGTGCTGATCGTCGGGAATCGGGGATCGGATTCAACGCCGTATACCAGCCGGTAGGCGGTCAGGGTGGAAAGATCATGCCGCCGACACTTCCAGTGCCCGACGATGTGAAGCGAGCTGCCCAGCGGGATGGGCGGTCGCTGCGTCCGTACCTGTTCGAGGAGCGTCTGATCGACGGCGAGCGACGGGACACGGTGGTACTCGACCAGGTACCGTCGCAGGCCAACCGGGTAGAGGAAGCGCTGCTTGCGGCGCGTGACACGGGTCGGCTCGACCTTCCGATGTTCGAGCTGCTGATGAAGGACGAGGGC # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAACACCGGCCGAACCTGGCCGGTCTCCATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-14.20,-14.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 6072219-6073503 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHJW010000001.1 Micromonospora polyrhachis strain DSM 45886 Ga0436963_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================== ================== 6072219 37 97.3 39 .................T................... GTGTATGCGCTGCGCACATCGTAGCCGCACACCCCGGCG 6072295 37 97.3 38 .................T................... CTCGGGGAGGTCTTCGGCGTTGGCCAGTACGCAGCATC 6072370 37 100.0 37 ..................................... CCGGGCATCAAGCGGTATTCGCGCCGACTGATCAACC 6072444 37 97.3 40 .................T................... GGCTTCGGTGGCCGACCACGACGGTCTCGCAATTGTTCCA 6072521 37 100.0 37 ..................................... GCGGTGTTCGGCCCAGGTGCCGTGCATGTCGGCGACG 6072595 37 100.0 37 ..................................... CCGGTCGACACGGACGACGAAGCTGCCTTTGCGACGT 6072669 37 100.0 38 ..................................... CCGAAGTGGTACTGCTCATCCACCTCGAAAGCGCTGTC 6072744 37 100.0 38 ..................................... ACCCACGCGCGCACCGCGCAAGAAGCCCGCGATCAGGT 6072819 37 100.0 38 ..................................... GTCCGCCTTGGACAGCCAGATGTTGACTGCCCCCCGGA 6072894 37 100.0 36 ..................................... TTCACCTTCCAGGCCCGCATCCCGCCGTACGAGTTG 6072967 37 100.0 38 ..................................... GAGGCCGGCATGCCTTCTCCCCTCTCGCGCTGCTATTG 6073042 37 100.0 36 ..................................... TTGCCTCTCTCGGCCTCGCAGCGGGAGGCATTGGAG 6073115 37 100.0 46 ..................................... AGGTCGAGGAAGCCATCGATCAACTGACTGCCACCCTGCCACCCTG 6073198 37 100.0 36 ..................................... ATGCTCAGCCACAGCGGCACCGGTTTCCAACCCCAG 6073271 37 94.6 37 .................TA.................. CATCTGGCAGGAAAGGGCATGGGCGACGTGCGCAGTA 6073345 37 94.6 37 ..............T..T................... ACGATGGGCGGCACCTACGAGTCCGGGCCGACCGGCC 6073419 37 97.3 8 .................T................... GCCGTCGG Deletion [6073464] 6073464 37 83.8 0 ..........AT.....T...T...........T.G. | G,TA [6073491,6073493] ========== ====== ====== ====== ===================================== ============================================== ================== 18 37 97.9 36 CCAACACCGGCCGAACCCGGCCGGTCTCCATTGCGAC # Left flank : CCGGCAGCCGATTATGGTCTGGCCACTGTGGCGACAACCCCTTGATTCGTACGCGGTTGTCGCGCTGCTCGAACACCCGGCGCTGCGCCCACGGCAGGGCACCGACGCTCCCGTGGTGCCCCGAGCCGGCCTGGCCCCCCTCGGCGTGTTCTTCGTTGGTGCCGCCGCCCGGCAACCCGTCAAAGGCGCAAAGTCAGCGGGCGTACTGGCACCGACCCGGATCAGTCTCGTTGACTGACCTATCCCTCGCAGTCGACGGGCCAAGGTCAAGCGGTTCGAGGAAGCACGAAGGAAGATGGTACTGCCACTGCTCCATAGCGGTTGGCGAGTTCATTGATAAATGAAGAGATACGCCCGATTTGTCGCTCAGGTTAGGAACCCTAGGCTCGCACGCCTTGAGCGGGGGGTTCCGAACCGCAAAATGTCCACAAGAAAGGCAACTCGGACAGGATTTGGTTATCGTAATTTTGGTGGCTGCCTATATTCGCAGCTCGCGAGCC # Right flank : CCAAATGGTTGTGGTTTTACTACTCTGTGCTCGGAGCGTTTTTTAGCGCAACTCCGTTGCTTAGATAAGGGGATTTGTCGGAATTGGAGATCGCGTATTGTACGCGATTCCACAGTTTTGGCTGTAAGAGTTCTTCTGCTTCCCTTGGTGTGCAAAATTTGTATTCGAGTAGCTCGTTGTCGGTTGGCTTGAGTTTGGTGGATTGCTGGGAAGAGATTGTGCCACCATCGAAAATAAACATCAGACTATCGTCCCATGGGCCATGTGGTGCTACCCAGTCGATGGCAAGTATCTTCCGCACCTGAATTTCGAGACCAAGCTCTTCTCTTAACTCTCTTTCGGCGGCCTTGTGTGGAGGTTCATTGGCTTCGACCATGCCGCCGGGTAAATCCCAGTCTGGCTTGTAGCGTGGATTGACCAGCAGGATCCGGTTGTCCTCATCGCGGATTAGGACGTCCGCTCCTACCCGCTTACGTGCCTGCTTGGCGTTCCCCTCTGCA # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAACACCGGCCGAACCCGGCCGGTCTCCATTGCGAC # Alternate repeat : CCAACACCGGCCGAACCTGGCCGGTCTCCATTGCGAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-16.20,-16.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //