Array 1 1679760-1678079 **** Predicted by CRISPRDetect 2.4 *** >NC_015676.1 Methanosalsum zhilinae DSM 4017, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 1679759 29 100.0 32 ............................. GCTTTTTAGTACTATGGGACAACTTAGAACCA 1679698 29 96.6 32 ............................T GTAAAGTTTTTGCCACAAAAAAGCGGTGACGG 1679637 29 100.0 32 ............................. TTTACCCTGTCGATATCTTCGAATATACTTAC 1679576 29 96.6 32 ............................A GTACCAGATGACGGATTCACTGATGATGGGTA 1679515 29 100.0 33 ............................. CTACAGGTAAATCAAATTCTGATATAATGCGAA 1679453 29 100.0 32 ............................. TTTAATCGTAACGAGTAGGTTTGAGTTTAGAT 1679392 29 100.0 32 ............................. TCGGGCATATCATGATGTGGTATGGTGATGCA 1679331 29 100.0 32 ............................. TATAATTTATTTGATACCGATATGAGTAATTC 1679270 29 100.0 32 ............................. GACTAAAGTTTGGACAAAACCTTGCTTTACCA 1679209 29 100.0 32 ............................. AAATATTGGTTTAGATATTGCTGAAGCAATAT 1679148 29 100.0 32 ............................. ATTCAGAAGCAAAAAGAAGGCTTGCTGAAAGA 1679087 29 100.0 32 ............................. TGGTCACATTATGCACCCATGGGGGATAAAGA 1679026 29 100.0 32 ............................. ACACAACGGGGAAGAAATCGATAGCATCAATC 1678965 29 100.0 32 ............................. AGCGGGTGCGACAACGGGTTTATGTGCGGGAT 1678904 29 100.0 32 ............................. ATGCAATATATGATACCTGCGAATTCAGGACC 1678843 29 100.0 32 ............................. TTAAAACGGTTTGGTTCAATGATTATGATAAT 1678782 29 100.0 32 ............................. ACCCCATGTGGTTATTTTGTGTTGAGGAAAAA 1678721 29 96.6 33 ............................A TGTAGCGGATAGATTCGGAGTTAATCCTTCAAC 1678659 29 100.0 32 ............................. TTAACGGGTTGAACTGTGTAAAGTCTGTCCCA 1678598 29 96.6 34 ............................T TTTACCAGGGAGTACTAAAACGCTTAGGGGTGAT 1678535 29 96.6 32 ............................A GTTAGAACTTGCATCCGTCCCTGTCTGATCGA 1678474 29 100.0 32 ............................. GTTTTAATAATGAAAGATGAGATTAAAATAGG 1678413 29 100.0 32 ............................. GGTATTGGAAAGTGGATGAGAGTGCTGGCACT 1678352 29 100.0 32 ............................. ACCTTCCTCTCACCATCATCTCCACAGACCAT 1678291 29 100.0 32 ............................. CAGTAAATCGAACAGTAACATATTCAACAGAT 1678230 29 96.6 32 ............................T CACTTGTTTTTAACCCTATAGAATTCTTTGAA 1678169 29 100.0 32 ............................. CGTATTCCCCCGAACGGCCTGAATCCCTTCTG 1678108 29 100.0 0 ............................. | T [1678082] ========== ====== ====== ====== ============================= ================================== ================== 28 29 99.3 32 GAGTTCCCCACACACGTGGGGATGAACCG # Left flank : CATTCTGTCGAAATAGTTAAAGAAATTCGGGAGAAAAAAGTTACTTACATAGTCTGTGATGTAAAGGTTACAGATTCAGCTACCAAAGAACAACTGGTCTAGGAGATTCTGCGTGAACTGCGAGGATATGTATACGACGGAATCACAACATACCAGCTATGCAGAATCCTGAAACAAAACTTTGGAATAGCTTACCGGTATTGCTGCGATTTAGTGCAGAGACTGAAGATCGAACTCGATATGTACTGTCCTGACCGACAGCATTTATACTTTGCAGAAAAAATTGAAATGCAATGATAAGAATTGCAGCAAAATCAGGATATAATAGGTGATAATAAACAATTTTTTTATAATTTGTTTTATATTTTTGAAATCAGTTCGGTAAAAAATAATATAGATGGAGACGTAAAAGAAGTTAATGACAATGTATGTTTAACGCAATAATTCTGTATACGGAAGAAAGTTGCCTTCATCCTTTCTAATCAAATATATAAGAAACA # Right flank : CAGTTTTTATAAATCGCTGTTGTAGACCGGATAGATTACCTACGTATGTAGATATAACAAAATCATAACACAAACTAAAAATTAATCTAAATAAAAAAATTGATATACTATCATAAAAATTACTAATGTAAGTTATTTATCTAGTGGGATACAATAGTGAATTTTTACAATAATTGGGGAAAATTCAGAACAGGTTCTGATGAAGAATTTAACTACCACTTGTTAGCATATCATTGTCTTGATGTAGCAGCAACTGCTAATTCATTATTACACAATGACAAGATCTTCTTAGAAAAATTTAAAAATTATTTACCAATAGAAGACGACGATTTGATTTGCCTTATAACATTTTATATTGCAATTCATGATATCGGTAAATTTTCTAAGAATTTCCAGTCACTACAACCTCATCTTATGAAAAAATTGAGAGGTTATAGCTCTGAGAAAAGTTATGAAATAAGACATGACAGTTTAGGATACCATCTATGGAACAGCTTATG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCACACACGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTTTCCCCACACACGTGGGGTTGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //