Array 1 77100-75678 **** Predicted by CRISPRDetect 2.4 *** >NZ_QHHU01000038.1 Amycolatopsis balhimycina DSM 5908 AA000373-38_GDW02563, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================================================================== ================== 77099 28 92.9 33 ....C...................A... CAGCAGCACGCCGGCGATGCTCAGCAGCCGCAG 77038 28 85.7 33 ...........AT.A.........T... TTCGACCAAGTCGGCAGGCCCGTATGGATCGAA C [77019] 76976 28 89.3 32 .......A................A..G CAGGTCGTCGGCACCTCGTCCAGCTCGCCGCT 76916 26 82.1 33 ..A...TT....--.............. TCACGACATCGACCCGGACACCGGGACGTGGCG 76857 28 92.9 33 ..T......A.................. GTGCATGCCGTCCTTGCGGCCGGTGTAGTCGCC 76796 28 96.4 33 ....................T....... CGTGGCAGTGCCGTCGGGGATCGGTGGCGGGAT 76735 28 85.7 33 ..........G...G..C....C..... GGCGCTCGGCGGGCTGATCGCCCTGCAGCGCGG T [76724] 76673 28 96.4 33 .....................T...... CATGGTCAGGTCGGGATGCTTGGTCGAGCGTCC 76612 26 92.9 34 .............--............. ATTCGTCAACGGCGGCGGCGCAGCGGGGCAGGCC 76552 28 92.9 33 ..........T...G............. CCGCTTGGACAGCTCGACGGGGTTATTGGCGAC 76491 28 92.9 33 ..T.....G................... GCCGGTAATGCCACGGGCCAGCGGCTCTTCCCA 76430 28 92.9 31 A.T......................... TCGCGCGGGCGTCCGGTTCGGACACCTGGCT 76369 28 89.3 32 ..T......A...........T...... CTTCTCGCGCATCACGCGCCCGCCATGGGCTT GCGCC [76357] 76304 28 89.3 31 ..T.........T............C.. GCCCTCGATCGCGCCGAGCCCCTTGGTCTTC 76245 28 89.3 33 .CGA........................ CATGATGTAGGGGACGCCACGGCGGTAGGTGGC 76184 28 92.9 33 ..G...........T............. CCTCTTCGCCGCCTGTCAGGGCTGCCACTTGCA 76123 28 85.7 33 ...AG.......T...........A... GTGGAGGCCGGCGCCGCATTCGTCGGTGTCCTC 76062 28 96.4 33 ........................C... TGCATATCAGGCGTTCACCGTCTCGGCGGCTGT 76001 27 92.9 33 ...-........A............... CACGCCGCCGAGGAAGCCGGTGATCTTGTTCCA 75941 28 89.3 33 ..TC.................T...... GCGCTCGCAGCCGATGCCGTCCTCGTACGGGCC 75880 28 100.0 88 ............................ CACCGACCGACTCAAGGCCGGCGGCATCCGGCAGTCATACCCGCGGGGCTGGTCCTATCAACGTGCGTGAGGTGCAGCCTGGGGTGTG 75764 28 96.4 31 .......T.................... CGTCGAGATCTGGCACGCGCTGCGTGACCCG 75705 28 96.4 0 .................A.......... | ========== ====== ====== ====== ============================ ======================================================================================== ================== 23 28 91.8 35 GTCGTCCCCGCGCACGCGGGGCTGGTCC # Left flank : TGGCGTCGAGAACCGGCTGTAGGGTGCGAATTTCGGCGGGTGCGGTCAGGTGTCCGTCGGGGAGTTTGCCCCAGTCGGGGCGTGTGTGACTTTGGACATATTGGACGTAGCTGCCACGGTTGCTGTCCAGGCGCCAGAGCACACCGTGGGCTTGCCGTTTCGGGGTGTCGGCGGGGACGTCGGGATAGACCGACATCAGGGTCCGATGCATGTCGTGGACGTTGGCGTAGTCGCGGCGGAAGGTGCGCGAATGCACGTTGATAGTGAGTTTGCTCAGGAACACGTGGTGTCTCCGGCGGGGATCATGTTGTCGGTCAGCGGGACTTCGCCGACAAGGACGGTGCGGGTGGCGAAGCGCCGGGCGCCGTGGGCGAAGGAGCGGGGGACGTCGTGGCGTGGTTCAGCACCCACGGTGCCGGTACTTCCGGGACAACCAGCGAACGTCCGACCAAACTGAACAGAAACACTGTTTCTCCTGGTAGATTCACAGGTTAGCAAGT # Right flank : GCTGGGCGCGGACCGCAACCGCCACCGGACACGCGGGGCCTGGACTTTGCGCACGGTCGCCGTGATCCTGACGAATCCGCGCTACACCGGCCGCCAGACCTGGAACCGCCGCGCCACCGACACCAGCGGCCCAGCCGCAACGCCGGCCCTGTCGGCGAAGCCTGCACATCGTGCGCTCGTCACCGAGCAGGACTTCATCGCCGCTCAGCAGATCCGGGCGGCCCGACCAACCACCGACGGCCACGCTCACCGCTTCGCCCTGGCCGGTTTGATCCACTGCGGTGTTTGCGACCGGCGGCTGGACTCGCACTGGAACCATCGGCGTCCGACCTACCGGTGCCGCCACAGTCACACCAGCACCCAACGCGCGGGCCAAGGGCGAGCGAAGACGCTCTACATCCGCGAGGACCACCTCGTCGAGGAGATCAGCATCCGGCTCGGAGATGAAGGCAACGACGGCCATGCCACACCGGAGCTTGACCGAATACGACACAGACGTG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.59, 5:-1.5, 6:0.25, 7:-0.18, 8:1, 9:0.09, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCACGCGGGGCTGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGTCCCCGCGCACGCGGGGCTGGTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.40,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [12-23] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 84061-83250 **** Predicted by CRISPRDetect 2.4 *** >NZ_QHHU01000038.1 Amycolatopsis balhimycina DSM 5908 AA000373-38_GDW02563, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================================================================ ================== 84060 28 100.0 29 ............................ GCGACGTCGGGCGGGAACGTGACGAGGTC 84003 28 92.9 33 .............C.........C.... CCTCAACGGTGTGGTGTCGTGGCGGATCATCGG 83942 28 100.0 33 ............................ CGGGCCGTTGAAGTACGTAGGGCTCGACGGGTC 83881 28 92.9 33 .........AG................. CAGAGCGTTGAACTCGTCCGAGCCGGGCAGGAT CGT [83857] 83817 28 100.0 33 ............................ TATGTAGCGGGATTGCGCGGAGATCCCATCGGG 83756 28 89.3 31 ...........A......A........G GGACTTGGAGGGGCCCGAATCAGAAACTCCC C [83746] 83696 28 85.7 33 .....T.T......A......T...... TATCGCCGGGAGCGAGCAGGTCGCGAGCGTGCA 83635 28 89.3 32 ....C.........A...A......... CGGCACGAACCCGGTCCGCTCCTATCCGTTGA 83575 28 75.0 92 .C.T.....A.......T.AA...A... GAAGCGGACGACCAGCTCGGCCGGCAAGCCGAGGTCTTTCCCGTGCACGGGACTGGTCCGGCGATCCTGGGCAACACCAAGAGCATCGACCG 83455 28 85.7 30 ....C.....T...T.T........... CGACTGGACGTGGAATCCGTTCGGCGTAGG 83397 28 82.1 29 .C.....G....T....T..A....... CGCCAGAAGAGGTGCGTCGCATGGTTGTA 83340 28 85.7 35 CG....G........A............ CTGCGTCATCAACACACCAGGACAGGGCGCGTAGT C [83329] 83276 27 85.7 0 ...C-......C..........C..... | ========== ====== ====== ====== ============================ ============================================================================================ ================== 13 28 89.6 37 GTCGTCCCCGCGCACGCGGGGCTGGTCC # Left flank : CGGGAAAGCATGGTCTCTGCGGAAGCTGCTGGCCGAGGTCGACGCCGGGTGCGTGGCGTTGTGGGTGCGTTGGCGTGGACGCACGGAAGTCGAGATACCCGAGACGGTCGGCTTGGTCGACATTCACGACACCGCGGACTTCCGGCCGACCGAGCGAACGTCCCGACATCGTCCCGTTCCCGGCCTGTCGACCGAGCCGCGCCATCAGGACGGGATGACAGAGCCGCCGTCCAGCGCACTACGCCGGCAAGATCATCCTCTGCTGCCGTCTCCGGCAGAGATCGAAGACGCTCGCACTTCCGCAGGTGGCTTCACCCGCGCGCAACTTGCCGTCTGGGGCGTGGCGTGGCCGCCCCCGAAGGGGTGGAAGAAAGAACTGAACGCCCGTTGGCGCGCAGCCCAGACGAAACAGCCATGAGGAACCTGGCCGCCTGCCATTCACAACGAGGAATAGTGCACGAGCAGCGCCGCAGTCCCCGGCGCGGGCAGCTGATCCCCGT # Right flank : GGCGGAGAGCGACAATAGCTCTCCGCCGAGCGCACTATCTGAAACTGCGTTCGCCGCGAGTTGGGGTCAAAAGTGAGGTAGCCGTGCGGATGCGCAAGACTGTCCGGGTGTTACCTGACATGGACCGATGGCGGCAACTCATCAGTGAGTACGGGCAGCTACAGCAGCTAACCGGGCACACACCTCAGACACGTGGTCAGCGCTTCAACAACATGATCGCTGAACTCCTACAATGTTGGGGCATCCAGGCCACGGCCAATGTCCGAGCCGCCGGCGAGATCGACGTCGCGTTCGCCATCGACGGCGTCCGCTTCGTCGTCGAGGCCAAGTGGGAGAAGACCAAGGCGGACACCGGACGTATCGCCAAGCTGCAGAAACGCGTCCGGCAGCGCTTGTCCGGCACCTACGGTGTATTCCTCTCCATGTCGGGCTACAGCCCAGAAGCTCTCGACGATATAGCCGACGGCGACCGGCTCGAAGTGCTCCTCCTGAGCATCGAA # Questionable array : NO Score: 4.71 # Score Detail : 1:0, 2:3, 3:0, 4:0.48, 5:0, 6:0.25, 7:-0.39, 8:1, 9:0.37, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCACGCGGGGCTGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGTCCCCGCGCACGCGGGGCTGGTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [18-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //