Array 1 145633-143485 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFHCS010000001.1 Streptococcus suis strain 2018WUSS100 Scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 145632 36 100.0 30 .................................... TACTAGACAAGTTGCATGATGAGAAGCTAC 145566 36 100.0 30 .................................... CGGGTTAGTTGCCTATTACTCCTATCTTTT 145500 36 100.0 30 .................................... TCAGCCCTCTTAATAGCCTGGTGGCTGTCC 145434 36 100.0 30 .................................... GTTCTTCCTCGGTTTCAAAAGCTGAGTGAG 145368 36 100.0 30 .................................... TGAAAGCAACAATACTATTTATTTACAGTA 145302 36 100.0 30 .................................... TGCAAAGGAAGGAAGAAGAGTTAAGGAAAC 145236 36 100.0 30 .................................... ACCCTAGCGACAAGAAAGAGCGGATAGTGG 145170 36 100.0 30 .................................... AGGTTCGGGTGCTTGGTCTGGCGGTCTTGC 145104 36 100.0 30 .................................... CCAACGTCTGTCATAATTCCTTGGATACCA 145038 36 100.0 30 .................................... TTTGGTCTTGAGAGACTTATATACTTTTTC 144972 36 100.0 30 .................................... TACTGCTGGATAGTTCGGAACGGCTTGGGC 144906 36 100.0 30 .................................... AAAGAATGCTGAAAAACTAGCTAAACATTT 144840 36 100.0 30 .................................... TAAGTATATACGTGTTAAGAGTAACGGTTT 144774 36 100.0 30 .................................... AATTTATTTTCTTATTGTATACGGCATCTA 144708 36 100.0 30 .................................... TCCAAGCCGTACACGTTTCAACAACCCAGT 144642 36 100.0 30 .................................... TACTTTTGTTTCAATGTCACCATTTCCTGT 144576 36 100.0 30 .................................... GGTTGCCACTGGAAGTCAAGGCTGTGGATT 144510 36 100.0 30 .................................... AGATATTTCTGAAAAAATTAAACTAGAAAT 144444 36 100.0 30 .................................... TAATGTCGAGCGTGTCGCTGACATCATCAC 144378 36 100.0 30 .................................... AACTGGCAGTATCAGGTACAAAAAGTGGTA 144312 36 100.0 30 .................................... CTTGATTAACGAGCTGGTACATTGGGATAA 144246 36 100.0 30 .................................... TGCTGAAATAACAAGGTACTGATTTTCAAT 144180 36 100.0 30 .................................... AGCTTTCTAAATTCCTCCGAGTTGTGATAA 144114 36 100.0 30 .................................... CAGACCTGGGAGCGATGAGTCGGTGTCTTA 144048 36 100.0 30 .................................... AGTCCACAGGTCTGTTTGATGTCAACGGCA 143982 36 100.0 30 .................................... TAGCCACAAACGGAAAGTTGCCTTGAGACT 143916 36 100.0 30 .................................... CTTTTGTTCTGTCAGTATTTGTCGTTTGTA 143850 36 100.0 30 .................................... CTTTGAGGGTCTCTGGGGTACATCAGCTGT 143784 36 100.0 30 .................................... ATTATATCTACTACATTAACCGCTCGTTTA 143718 36 100.0 30 .................................... AGCATTTTAAAGATACAGTCGTTCCGCAGA 143652 36 97.2 30 .........................A.......... TTTATTTGTAGAACAAATAGCATCTCATAG 143586 36 97.2 30 .........................A.......... TTCTTAGTCTTAGATTCTTCGTCATCATAT 143520 36 97.2 0 .........................A.......... | ========== ====== ====== ====== ==================================== ============================== ================== 33 36 99.7 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC # Left flank : GAAAAACCAGAAGTGAAATCAATTATTGAAAAATTAGCAAATTCTATTACTGAACTAATCTCTTATGAATGTCTAGAGAATGAGCTTGATTTGGAGTATGATGAGATTACGGTTTTGGAGTTGATAAAGGCGTTAGGGGTCAAAATTGAAACTATCAGTGATACGATTTTTGATAAAATTTTTGAGATTTTACAAGTTTATCAATTTTTGAATAAGAAGAGAATTCTTGTCTTTATCAATGTGTTATCCTATTTGACAATGGATGAAATTCAGAAAACTAAGGAGTATATTGAACTTTCCAATATGGATGTTCTTTTTCTAGAACCGAGAAAAATAAAAGATTTCCCTCAGTATGTTTTGGATAAAGACTATTTCTTACTATCGAAAAATATGGTAAAATAAGTACATATAGTACAAATATTAGAAACTATTCGAAACTGAAGTCTGGCTGAGACGAATGGCGCGATTACGAAATTTTGTGGCAAAAAATAGTCTACGAG # Right flank : GTATAGCTATTCAGATTTTTACGATAGCCTAGAAAATACTGTCGAAATTAATTCCCCTCCATTTTCCTCCAAGATTTCTAACTCACCCTTGTCCCATCTCCCCCTCCATGCTATACTATATATAATCGTTTTATTTCAAAGGAGACAAAGATGACAAACCTAAAAGAGCAGGTTGGGATTAAGGCGGCGGAATTTGTGACTGACGGCATGATTGTTGGGCTGGGGACTGGCTCGACGGCTTACTATTTCGTGCAGGAGATTGGTCGCCGGGTTGCAGAAGAAGGGCTACAAATCACAGGCGTAACGACCTCTCATGCTACGGCAGAACATGCTGCGTCCCTTGGGATTCCCCTAAAAAATATCGACGAAGTCGAATATGTGGACTTGACGGTGGATGGAGCAGATGAGGTTGATGGAGACTTCAATGGGATTAAAGGCGGTGGCGCAGCGCTTCTCATGGAGAAGGTGGTAGCAGTCAATAGTAAGGACTGCATCTGGAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //