Array 1 2895423-2896950 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP077997.1 Pseudomonas aeruginosa strain SRRSH1521 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2895423 28 100.0 32 ............................ TTTCGCCTCCAGGGTCGGCCGCAGGTTTCGCT 2895483 28 100.0 32 ............................ TGGGAAGATGCGGACCCCGACAACCTGACTGA 2895543 28 100.0 32 ............................ TCGACCTTCTTTTCCCAGGTGGCGATGGCGTC 2895603 28 100.0 32 ............................ GGGCGCAGGATTCGCAAGAAAGGCTTCGCCAC 2895663 28 100.0 32 ............................ TTGGGTTGCAAACATGTTCATCGGTGTTTCTC 2895723 28 100.0 32 ............................ TGGGGAAGCCATGTCCATGGTCGTTTAATGGC 2895783 28 100.0 32 ............................ TGCTGCTGCGCCTGTTGATCTGAACGCCCATC 2895843 28 100.0 32 ............................ GGTGGCGGTCGCTGGCGAGCCGCCGTTGCTCA 2895903 28 100.0 32 ............................ TACATGCCGTCGAAGGGCGATATCTACATGTT 2895963 28 100.0 32 ............................ ATTCTTATCGGGGCTTTTTATCTAACCTTCTA 2896023 28 100.0 32 ............................ ATGAAAAGCATCCCCTTCGGGGACTTGTGGAA 2896083 28 100.0 32 ............................ TTCCGCTCCCGGCCGGCGGCGCGGCCCGCCCC 2896143 28 100.0 32 ............................ TCGATCACCATGACTATGCGGTATGCGCATCT 2896203 28 100.0 32 ............................ TGTCAGAAGGGATTACCGCGGACCTGGTCGCA 2896263 28 100.0 32 ............................ TCAGGCTCATTTCGTTGTCCTCGATGCCCCGG 2896323 28 100.0 32 ............................ TGCTCGCTGATGACCAGCCGCAGCGCATGGTT 2896383 28 96.4 32 .......................G.... CGCAAAGCCCCGCAGGACAATGACTTGATATC 2896443 28 100.0 32 ............................ AATCCGAGGCGGAGTTCAGCCACTTGGCATAG 2896503 28 96.4 32 .....................C...... GCAGTGATCGAGCGCGCACGGTCGCGCAAGAC 2896563 28 100.0 32 ............................ AGAAGCGCATCCAGCGATACGAAGATGCACTC 2896623 28 100.0 32 ............................ AACCAGCGTGTCGATGCCGAAGCGAAGGCCCG 2896683 28 100.0 32 ............................ AGTGAGCACGATCATCATGTCGGCCTGCTGGC 2896743 28 100.0 32 ............................ ATCACCGGAGGCCACGGATTCGCTGTAGCTCA 2896803 28 100.0 32 ............................ ACCAGCTGCTGCGAGTGCTGGTTCGCGCTGGC 2896863 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 2896923 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 26 28 98.6 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGAACTTCGTTGCGGACATGCCGATGAGGTGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 2908023-2905475 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP077997.1 Pseudomonas aeruginosa strain SRRSH1521 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2908022 28 100.0 32 ............................ ACCAGCCAGTCAGGCGGCGGCGCTTTTGCCCT 2907962 28 100.0 32 ............................ TGGTCGTCCAGCTCGACGTCGATCCTAGTTGT 2907902 28 100.0 32 ............................ ACAGCCCCTGTAGATGCGGGCAAAGGCCCTCA 2907842 28 100.0 32 ............................ AGGGGGATTACGACGGTGACTAAGTACCTCGT 2907782 28 100.0 32 ............................ TGGACGCGGGCGTCCTGGCTGATCAGGCTCCA 2907722 28 100.0 32 ............................ ATCGTCTTCGAAGGCCAGCCGGTGCTCTGCAA 2907662 28 100.0 32 ............................ ATGAGGGGCTTCAGGCTACCGTCCTGCAACGA 2907602 28 100.0 32 ............................ TGATCGCGCGGGAGCGTGTCCCGGCAAAAAAG 2907542 28 100.0 32 ............................ TGGATGCTATCCATGGTGATCTCCATAACCTG 2907482 28 100.0 32 ............................ AGTTCGTGAGCCTGATCGCGCGGGAGCGTGTC 2907422 28 100.0 32 ............................ AATAACCCGCATTGGCCCCATATAGCTAACAA 2907362 28 100.0 32 ............................ CGGTGGCTATGGGCTGGGCGCTGCATCACTGG 2907302 28 100.0 32 ............................ AGGAGGAAGAAAGCTATTCGCAGCAGGACGCG 2907242 28 100.0 32 ............................ TGGCCGCAGCGGTGCTGAGTCACTGCGAGACC 2907182 28 100.0 32 ............................ GACCGCTACTGCGCCTGCTGCTGTGGCTGCTC 2907122 28 100.0 32 ............................ TGGATGACCCTGCCGGCCGGCACCTGGAACTC 2907062 28 100.0 32 ............................ TTGGTGGCGACCACCAGGCCGTCGCGCACGAA 2907002 28 100.0 32 ............................ ATCGAGTTCGTCCGCCTCCGAACCCATCAGTT 2906942 28 100.0 32 ............................ TGGGGCGAAACCCCTAGGCGCCGGGCTAGCTC 2906882 28 100.0 32 ............................ TCCTCAAGTTTTGTCAGCCGAGCCAGCATTTC 2906822 28 100.0 32 ............................ TCGATGCCCCGGCGAACCGGGGCGGGGTGGTT 2906762 28 100.0 32 ............................ TGATTGCTGCGGCACCTGAACTGCTCTCCATT 2906702 28 100.0 32 ............................ TACCCCTCATTAGCCCGGCAAGTCCGGGCATT 2906642 28 100.0 32 ............................ ACTCTGCGCCTCGACGTCGGGATCTACGAAAA 2906582 28 100.0 32 ............................ AAAATGAAACGGATCAGCTCGCCGACAATCTC 2906522 28 100.0 32 ............................ GGAACGAAGCGGGTGCGACACGTCGCAACTGC 2906462 28 100.0 32 ............................ AGACCATCACACCGGTGACGCTGCACATCGTC 2906402 28 100.0 32 ............................ GCATAAAAGTGCCAACGTCGACTTTGTAGCGT 2906342 28 100.0 32 ............................ AGGAGGTTCTGGTCCGTCGCCCAGTTCCCGGT 2906282 28 100.0 32 ............................ TCGCCCGTCACGGAGCCCGCCGCCTTGGTCAC 2906222 28 100.0 32 ............................ AGAATGGACTGCCGAGCGCCGGCCGCCAGTTG 2906162 28 100.0 32 ............................ CGGCATTGCTGAATGCCATAGCGGATCTGCTC 2906102 28 100.0 32 ............................ GGCATCCCCGAGCGCAAGCTTCCATCCCCGCC 2906042 28 100.0 32 ............................ AGCGGCCTGGACCTGGTTCGGCCCGTCCAGGC 2905982 28 100.0 32 ............................ CAGAAGCGCCGGCCGTTGGCGAAGAACCAGTA 2905922 28 100.0 32 ............................ GATACCTGACGGCCTGGTGCTGGATCACCTGT 2905862 28 100.0 32 ............................ TGTCCTTTCAACTCGGTCTGCTCGTAGAGGTT 2905802 28 100.0 32 ............................ TTGAGAAGCCGCGGGTGTCTAAGAAACTGGTA 2905742 28 100.0 32 ............................ AAGACGTGGCAGGCGGCCTACAACCACGACGA 2905682 28 100.0 32 ............................ TGACTGCGGGGCTGCACGACATAGTCGTCGAC 2905622 28 100.0 32 ............................ GTATGAAGTGTGTTACCGCGTGGGCGATTCCT 2905562 28 100.0 32 ............................ TCGTAGTGGCCCCACGTCGGCGGTAGCTCGCC 2905502 28 96.4 0 ...........A................ | ========== ====== ====== ====== ============================ ================================ ================== 43 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTAGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCACCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //