Array 1 10-1197 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHKY01000075.1 Salmonella enterica subsp. enterica serovar Montevideo strain CVM N48706 N48706_contig_75, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 10 29 100.0 32 ............................. GCTTCCCAACCTACCTGGAGCCAGGCGCGTTC 71 29 100.0 32 ............................. CGGGCGCGGTCGAGAAACCATGCCTGCTGATA 132 29 100.0 32 ............................. CCATATACAGTGGCGAAATTCCTTTTCCTCTT 193 29 100.0 32 ............................. CGCAGGCAACGCTTCCCATTCCTCCTGCGACA 254 29 100.0 32 ............................. CAACAGCCGGGAAAATGAAGGCTGAAGGGCAA 315 29 100.0 32 ............................. AATCTAATTATGACGGCAAGGCGACTACTAAA 376 29 100.0 32 ............................. AATAATCACATCACCATCACGCGCGACAACAT 437 29 100.0 32 ............................. CGGTCTCCAGATAATAGCCGATTTATTTAAAA 498 29 100.0 32 ............................. GCCCGCATTAAGCCGCTGACGCACTGGATCAA 559 29 100.0 32 ............................. CGCTCGCAATCGAGGTTTGCGCCGAGTTGCGT 620 29 100.0 32 ............................. GGAGACGAGAAAATCTTTAATAGTCTCAGCGT 681 29 100.0 32 ............................. CCCGCAATCTGCGGGCGTTCTCGTCAATTTAC 742 29 100.0 32 ............................. GATTGGCCCTTAGATAACGGGAGATCAAGCGC 803 29 100.0 32 ............................. CATAACCTTCGCTACCACACTTGCCGGTACTT 864 29 100.0 32 ............................. CCTTGAGGTTAGGGGAGTCAGGAAATTGCATT 925 29 100.0 32 ............................. ACAAAATCGGCGGCCCAATCGCCGGCGCTGAC 986 29 100.0 32 ............................. GCCTGCCGTCTTTTTATTGAGGTCTGTAAACC 1047 29 96.6 32 ............................T TAATCATTTTGTTTAAATCCCGGATCACCTCC 1108 29 100.0 32 ............................. GAGTTATTGTCACTCGTCAGTGATAATTTTCT 1169 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGTAAACCG # Right flank : CCCGTTGAAGATCTGGACGCATGGGGCAAAGCGTGTTCCCCGCGCCA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [8.3-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 568-50 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHKY01000024.1 Salmonella enterica subsp. enterica serovar Montevideo strain CVM N48706 N48706_contig_24, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 567 29 100.0 33 ............................. CATCGGCTGATACCACGATGTACACCACGCCCC 505 29 100.0 32 ............................. CTGCCTTTGAGATAGTCCCAGTTGCTTTCTGT 444 29 100.0 32 ............................. CCATTTATTTTTACGGGTGGCGCCGTCGTATA 383 29 100.0 32 ............................. GCGCGGCTCGCATGTCAAAAATTGTCGATACT 322 29 100.0 32 ............................. TGGCAAACGAAAGGCCATGTTGGCATAAGTAG 261 29 100.0 32 ............................. ACGTATTACGTTTATGTCCGCACCAAAAATGC 200 29 100.0 32 ............................. AGACATCAATTACTCAGGACGGGATGATGTTT 139 29 100.0 32 ............................. TATGCTGAATTACAGGAAGGCAGGAAGTACGC 78 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ================================= ================== 9 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGAAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAATTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGTTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTACCTGGTTGAATTCGGTCTGACTCCGGCCGCGTGTTCCCCGCGCCAGC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 18578-17330 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHKY01000024.1 Salmonella enterica subsp. enterica serovar Montevideo strain CVM N48706 N48706_contig_24, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 18577 29 100.0 32 ............................. TTGAAGACCGCGCTGATGCAATCCGCCAGGCG 18516 29 100.0 32 ............................. TCGGCATTGATCTTGTTCAGTTCAGCCGGTGA 18455 29 100.0 32 ............................. TGACCACAGGTTTTTCGTCTGCTGATGTCGGC 18394 29 100.0 32 ............................. GACAAGCTGGAACGTGATCGGCTTACTGATGA 18333 29 100.0 32 ............................. CGCCGTAAATTGTGGTACGTCGTGACTACAGA 18272 29 100.0 32 ............................. GCGACCTGCTCGACAGCATTCAGTTTGTTGTT 18211 29 100.0 32 ............................. GCAGCCGTGCGCAAGCGTGGCCTGACGATGAG 18150 29 100.0 32 ............................. TGCTGTTTGCAGACCACACAGGCGACAAATTC 18089 29 100.0 32 ............................. AGGGTGAACGAAGTCACTCTTAAATTTCTGAA 18028 29 100.0 32 ............................. TATGAATTTAATGTTTATCCTGGGCGCTATGA 17967 29 100.0 32 ............................. GTTAGGGAAGGTACTCCTGGCTAATTCTTTTG 17906 29 96.6 32 ............................A TTAGTATCAGTATAAATAACCACGTATTCACC 17845 29 100.0 32 ............................. TATGAGCCGATCTGGAACGTGAGCGCTGAAAC 17784 29 96.6 32 ....A........................ AGTTCGGCAGGTTTTAGTTCCGTCGCGTTTGC 17723 29 100.0 32 ............................. AAAATATAAAGTATGTTTTGTTTAATTCTAAA 17662 29 100.0 32 ............................. GCAAAACTCCCCAGATACCGCGCATCGGCACT 17601 29 100.0 32 ............................. ATAAATTATCGGGAAATCATAATCAGCGCCGC 17540 29 100.0 32 ............................. TCGAGTTCTGGCACGTCAGACTGACGTATCGC 17479 29 100.0 32 ............................. AAAACCCTCAAATATGCGTAACGGGAGGCTGG 17418 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 17357 28 89.7 0 ............T...........G-... | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCACGAAGTGCGCTGTACGCCTAACACCTGGGTAACGGTTTCACCAAAAGTGAATATGCGCGGGGGATATGACGTGCTTTCCCAGGCGCTGGAGCGCGCCAATGAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATGCATTACTAATTTTACGGACGGCCTGCCGATGCCGTCTGTGAGTCATCCATTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGAGCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //