Array 1 66782-66181 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHJT010000002.1 Lipingzhangella halophila strain DSM 102030 Ga0436959_02, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 66781 30 100.0 31 .............................. GCAATGCAAGTTTCCTCGCAGACAAGCATGT 66720 30 96.7 31 .............................C AATCTTTACGCCACGGAATCCACGTTCAATA 66659 30 96.7 31 .............................C CAATCGTCGAAGGCTTCTGAAGCGCCTTCGG 66598 30 96.7 31 .............................T CGAAGCCAAGCTCGCCCGCGTCCGGGCCGAC 66537 30 100.0 31 .............................. TCGCGCATCAACTTGTGCCAGCTGGTGGTGC 66476 30 96.7 27 .............................A ACCAAGATGGCTACCAACGCGCGCGGC 66415 29 96.7 0 .............................- - Deletion [66387] 66392 28 86.7 32 --.G.........................C GCAGCACGCTGCGGCCCGGACCGTCATGGCTT 66332 30 96.7 31 .............................A GCTCCCGCCATTCGTCGCGGGACAGGGCCCG 66271 30 100.0 31 .............................. CGCCAAGCCACGCCCATTCGACGGGGGATAT 66210 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ================================ ================== 11 30 97.0 28 GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Left flank : GACAGGAAAGCCAAGGATGCGGTCGTCGAGGCGACGGAAACCCTCATTCGCCGGCTGGCCCCCTTCTCCCCGAGCTGAACACGCTCGGTATGCGGCGACCACCACCGCCGAAGAGCGGGGGAACACCCGGGGCGCGCGAACGCCCCCGCGCTCGTGCACCCGGCTCAGGCAGTCGAGGGCGCATTCCGTGCACGGGTAAGGGGCCGAACGCGGCGCCACGGCGCTGCTGGGCGCGGGCCAACCGCCGCGCGGACGGCTCCCTCCCCACCGACCGCGAGATCGCCGCCCAGCTCGACCAGAAAGGACCGCTGGGGACGGTTGATCAAGCAGTGGGGACAGCAGGGACACTTCGATCGGGCTACGATGTCCACACTCGCGCTGGAGTGGCCGGTACTGGCTTCAGGGCTGGGCGGACTCGTATTGCTGTGAGGCTTTTGTCGGTTTCTCATGAAGTGAATGAGATGGGCCTATAGGGTTAGCGAAGACGCAGGTCATTCACT # Right flank : ACCACCTGACACACAACCGGCGCCCCCGCGAGGTCCGCCGACTCGCCCCCACCGACACCGCCAGCGCTGAAACCGTGCACCCCGACGCGGACACCACCGAAACCCGGCAACCCCCGCCTGAGAACGCCGCAGTCGCGCTCAACGCGGCCCCCGAACAAGAACTCACCACGCGTTCCGCCACCATCACCGGAGACCACGGTGTCGTCGCACTTCGCACCACCTACACCACCGACACCGGACCAATCCCCGAACCGACCGAGGCAACCACCCAGACCTACGCACGCCCCCTCAACCACGCAGAAGCCGCCCAACTCCAGGCCCCACCCGGCGTTGTCGCCCTGGTCCAAGACGAAACCGCCTACCGCCACGGCCGCGCCACCGCCTTCACCACCACCGTGTACCGCTCCGACGCCATAAGCCTCACCGACCACTACACCCCACACCCAGCGCACACGTGACCCAGCCCAAGGCGCGAACGTGCCTTGCCGATACGGCGGGAT # Questionable array : NO Score: 5.41 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:-0.30, 8:1, 9:0.61, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1427620-1427952 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHJT010000001.1 Lipingzhangella halophila strain DSM 102030 Ga0436959_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1427620 29 100.0 32 ............................. TTATACGCCGACGGGATGGTGTCGATCGTGTT 1427681 29 100.0 31 ............................. GCTCCGGCCGGAAACGCTCCCGAGATGCCCG 1427741 29 96.6 32 ..............G.............. GTGGGTTGGATGGCGTACTGGCCGATGCGCAC 1427802 29 100.0 32 ............................. TCAGCCTCTACCGCGTCCGGGTGCTCCCGGAC 1427863 29 100.0 32 ............................. TACGTGGCGCCGAACGCGCTGGGCATGGCGGG 1427924 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 99.4 32 GTGCTCTCCACGCACGTGGAGGTGAACCG # Left flank : GCCGCCGCGGTCGTGGTACGCCGCCGGGACACCTGAGAACCCAGGCCAGCGATCGTGCGGTACCGACCCTTCACCGCGACGGGTCGATACCGCACGATTGCGGGGGCCAGTTGCGCAGCATAGCGACGCCCCTCCCGAGACCAAGGCGCCGACGGCTTCCCCCCGCAACAGCGGGGGTCCAACGCCTTACGGCGTCCCGGACTCGAACCGAATGGATTACCAGAAGTAGCCGTCAACTACGCACCGGGAGGCGCGTACCACCAAAGGTAAGAGCGAAGGACGGCGAACCTCCAGTAGTTTTCTGAGCCCGGCAACCAGCACCGGGGCGAGTGCCATTTGGTCCTCTGCATCCGGAGCTCAACCGAGAGCGGTAACGTAGCGCCAGTCCAGCAAGCCGGACCAATGGCCGTGGTGCCACTTATCGCGGCGAGAGCATGGAAACCAGAACCGACGATGGACCGAACGGTATTCTAGTTCCCTAAATGCGCAGCTCAGGAAGT # Right flank : GGCAGACGGGCGATCGGTCCCGCTTGGGTTGGTGTGCTCTGGCGGTGTGCCCCGAGATCGGCCGCCGCTGGTGCCGGGGCGCCTCAGGACTGCAGTACGTCGCCGCGGGTGCGTAGGTGGTCGATGAGTAGGCGGCCGATGTGCCGGATGTGGTCCACCATGGCGGTGCGGGCCGCGGCGGCGTCGCGGTTTCGTAGGGCGTCGAAGATCGCGGAGTGGTCGTGGGCCGAGGCTTCGGCCCATCCCCGGATGGTGCCGAAGAAGTTCAGCGGCACGTACTGCACGGTGAGGTTGAGCAGGGTCGTCATACGGTGCGAGTCGGAGGCCCGGTTGATGGTGCGGTGGATCTCGTGGTTGAGCTCGTCGACGTGCCGGGCGTCGCCTTCGTGCGCGGCTACCTCCAACTCCTCCTGCAGCTTGGTGATGCGCTCGATCTCGGCGTCGCTCAACAGTTCGGCCGCCCGCGCGGCCAGCTCGCCGGCGATGAACGCCTGGACCTC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCACGCACGTGGAGGTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCTCCACGCACGTGGAGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [48.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1634393-1634932 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHJT010000001.1 Lipingzhangella halophila strain DSM 102030 Ga0436959_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 1634393 37 100.0 35 ..................................... AGCGCTACTTCCGTTCACCCACCGCAATCGCCCCG 1634465 37 100.0 34 ..................................... TCCGTGCCTGGGCACGACGTGTTGTTGATGTCGC 1634536 37 100.0 35 ..................................... GAACTGGTCGGGGGTGATCTCATGCAACAGGAGCG 1634608 37 100.0 34 ..................................... ATGCCGGAGTTCGCATACGAGGCGACCGCGGCTG 1634679 37 100.0 35 ..................................... CGCGGCAGCGTGGCGCCGCTGATGACGGTGCTCGC 1634751 37 94.6 35 ..............C.....C................ GCCAAGGCAATGGGCCGCGGGCTGGACGAGTGGGC 1634823 37 97.3 35 ....................C................ GACCCGGAGGCCGAGGACGGCCCTGCAAATGGGGG 1634895 37 73.0 0 ...................TG.C..C..C.A..ATTT | C [1634909] ========== ====== ====== ====== ===================================== =================================== ================== 8 37 95.6 35 GTGGCAGCCACCCTTCGGGGTGGCTGAGGATCGCAAC # Left flank : TTGGATGCTGTTGCCTGAGTCGGTGACCTGGTTAGAGGACACACAGGCTTCTCTTTCTGGAGCGTGGCAGTGCTGCCGGCTGATCGTGCTGGTGACGATCCGGCTGCCCACGGTGAGTTGAGTGTTGAATCCTTGGACGAGAAATGTTCTCGATCAGTGCCAGGTTGGTGTGAGTGTGAGGCACCGCTTGGTGGGGCGTTATCCCAGTGCATGGTCATTTAGTGTTGGCCAGTGCTGCCCATGTCGTTCGTGCTCAAGTAATCGGACACATGGAACACACCCTCGCGAACCGCAAAGGGGCATACGAACTGGGGTAGATCTCCCACCCGAGTAGTGGACTAATCTTCGCGTTGAGGTGAGGCGAGGAGTGCTTGAGAACCATGAGTGGTCATCGATTCCCAGGGAGGTTCCCAAGCATGATTCGGACGAAGAGTACTAATTGGGGTCCTTATGTTGTCCCTTCGTGCTTCACTATCCGGTATTTTCCCTGCTCAATCGGC # Right flank : TGCCACATCCGGCGCAGCTGGACGCCGGGCAGTGCGAGGCACTCGATCGCGACGGAACCTACAGCGGGACGATCCAGTTCCACCTTGAACGAGGCGACCTCGGCGCAGCGTTGGCGCACCTGCTCGACGATGGAGTCCTGTTCCTCGTCGGTGATCGCAGTGGCCGGTGCCGAGTGCAGCAGGGTGAGGTGGATCCACTCGGGCTCGACGGGGACGGTACCGCTGCGGTGGGTGAGCTCGCGGTGGATTTCCACCAGTTCGGTCGGTGGGCTCGGCGGTAGGACGTGCCAGTGGTAGTCCTCGCGACCGGGGGGCCAGCGGGCGTTCACGCGCGCAAAGAAGCTCTCCATCGTGCGTTTCCTTTTAGCTGTCGAACTGGGCGAGGTGCTGTCGTACGGCCTCGGATTCGGGCGCGCCGAGTGCGGTGTGGGCCCGGCAGTGCCCGGTGTAGATGGTGGTGGGCAGGATGGAGGCCGCACGCGCCAGGTGCGTGTGCGCGC # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCAGCCACCCTTCGGGGTGGCTGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-16.30,-15.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 3 4370699-4369570 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHJT010000001.1 Lipingzhangella halophila strain DSM 102030 Ga0436959_01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 4370698 30 100.0 31 .............................. AGAACCGGGCGAAGACGAAGACTGGCACCAC 4370637 30 100.0 31 .............................. CCATCTTCGAGCCGACGGCGTCCGGGCCGTC 4370576 30 96.7 31 .............................C GCCCGGTTTCCATGGTGGCGCTGGCCACGGC 4370515 30 100.0 31 .............................. GCTCCGGGTAGTCCTCAGTGATTTTCTCGGA 4370454 30 96.7 31 ................T............. GAAGCTGCGCCCTCTGAGGAGGAGCCCGTCA 4370393 30 96.7 31 .............................G GGCTCCGGATCGTCTACGTCGACAACTACTC 4370332 30 100.0 31 .............................. GTCGCCATGGAGCACTGGCGCCTCCGGAGCC 4370271 30 100.0 31 .............................. GGGTCGCTAATCGCTAGGTCATGCATCATTT 4370210 30 96.7 31 .............................C GCCTCGGGGGAGATCCGCACAGATCAGGCGT 4370149 30 96.7 31 .............................G GCTACTTCTCCGTAAAAGACCCGTTGCCGCA 4370088 30 96.7 32 .............................G GGGGCCTGATGATGACGGCCCCGGGGGCGGGG 4370026 30 96.7 31 .............................T GCATACCCCGCGATACCTACTGCTAGCGATA 4369965 30 96.7 31 .............................C ACACTGCCACCATCGGAAATTGATTCCGGTA 4369904 30 100.0 31 .............................. CCAGATGAGATCGCCCGTGGCCGGTGGGTGG 4369843 30 93.3 31 .........A...................T CGCTGCCCTCAGAGGGCTGCAGGCCGCATGT 4369782 30 96.7 31 .............................C AGCACCAACCCCACCGACCGCTACCTGCACG 4369721 30 96.7 31 .............................G GCCCACGCTCATCACGGAACGGATCGCGGTC 4369660 30 93.3 31 ..............T..............C GTGATGGTGTGCTCATAGTCATAGGTGGAGA 4369599 30 83.3 0 ........................C.GGGC | ========== ====== ====== ====== ============================== ================================ ================== 19 30 96.7 31 GTGCTCCCCGCGCACGCGGGGATGGTCCCA # Left flank : GCTGGCCCGGTTCTCCCGGAAGGAACGTGCGTGGCTGTCGCGGACCGTCGCGTCACTGCGTTCCCACGCCCGGCGCCACCCGTCGTACTACAGGGGAGACCCGGGAGCGGTGCTGGACCACTTCCTCACCACCCACCTGTGCGACCACCCGTCAGCCGTTCCGAAGCGCTGGGCCGCGGCACCGACTTTGGCCGAGACGCGCGCTGACCTTCTCGACGCACTGGTGACCATCGCTGAGGAGGAAGAGGTTGGTGGAGGCGGAACGTGATCTCGATGTCTTTTCTGGTCACCCCGGACGGAGCCAAGTGAGGAGCGGTACGGAGAAGGGGGCACGCTCGGAGCGTTCATGCGGGCCTTCCGCACCGAAACACTTGCGGTTGGCTTCGGGTGATCGCTCGCGTCACAGTGGCTGGAATGCGGAAGTTATGGGTGGTTTGCCGGTTTCTTGGGAAGTGAATGAAATGACGCTATTACTCTTGTAGAATCGCAGGTCATTCAGT # Right flank : TCCCGAAATGCCCCATATGTGGCTGTGCGGGTAGGTTTCCCTCTTGGTGTGTTCGGGATGGCTCTCGGGGGAGGTCATGTGGCAGTAGGGCGCGACCGCCACGCCGCGGACATGGCCCCGCGGTTGGCCAACGCCATCACTGTGGCGGTTTTCCTGCTGCACGCCACGGCCGCGTTGCAGACACTGTTCGTGAATACCCGGACGCCGGTGCCGCACGATCCCGCCTCCGTGGCCGTGGCTGTGGCACTGCTCGGCACGCTGTTCGCGCTGCAGCTGCTGCAGACCCGGTGGGTTGACCGCCCCGAGCGCCGGACCGCGGCGCTGCTGGTGCTGGCCGTCCAGGCAGGCCTGGTCTACCTGCCGGCCTGGCACTTCGCCCAGGCCTGGGTGGGCCTGCACTCGTTCCTGCTGGGGACCGCGCTGCTGGTCCTGCGCGGCCCCCTACGGTGGCTCGCGGTCCCAGCGGTACTCGCCGGGGATGCCCTGCACCAGGCGCTGGT # Questionable array : NO Score: 5.56 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.46, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 4387640-4386938 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHJT010000001.1 Lipingzhangella halophila strain DSM 102030 Ga0436959_01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 4387639 30 96.7 32 .............................G AGAATTAAGACAAACCGTAAAAGGACGTAACC 4387577 30 100.0 31 .............................. GGACAGCGGAATCTCCCCCAATCCCCGCAGA 4387516 30 100.0 31 .............................. AGAAAAGGCCGGGAGCGTCACCTCCCGGCCT 4387455 30 96.7 31 .............................C GGAACCGACACGGTCACCCGAGACGACGGGG 4387394 30 100.0 31 .............................. AGAAAAGGCCGGGAGCGTCACCTCCCGGCCT 4387333 30 96.7 31 .............................T GGTTGGTCGAGCCCGTCAGGGACGCGATCGC 4387272 30 96.7 31 .............................C AGGCGTCCACCGGTGCGGGGCTCGGGTCCGG 4387211 30 100.0 31 .............................. CGACCCGGGCGGTTTCCGACAGCGGCAGGAT 4387150 30 96.7 31 .............................T TGTCCAGCGGCTTGATGGTCTGGTCGATGTT 4387089 30 96.7 31 .............................G CCACCAAGCAGGCCGGCCGGTGGAACATCGA 4387028 30 93.3 31 .......................A.....G CCCCACTCCCAAACACCCCCGAACAGGCCCC 4386967 30 93.3 0 ............................TT | ========== ====== ====== ====== ============================== ================================ ================== 12 30 97.2 31 GTGCTCCCCGCGCACGCGGGGATGGTCCCA # Left flank : AGGACCTGACGTGGAGTCCGGCCGCAACTACGCCGAGGGGGTGATCTGGTGACGGTCATCGTCCTCACCCACTGCCCTGTGGGGCTGCGCGGTTTCCTCACCCGATGGCTGCTGGAGATCTCCCCGGGCGTGTTCATCGGAGGCCCTTCGAGCCGTGTCCGGCAGGCGCTCTGGGCGGAGGTCAAGGAGTACGCGGGAAACGGCCGCGCCCTGCTCGCCTACAGCACGAACAACGAGCAGGGGTTCACGTTCGAGACCCACGACCACAAATGGCGCCCGGTGGATCACGAGGGCCTGACCCTCATGCACCGCCCGAATGAGCAGCGGGCCGCTTCCGCATCAACCAAGCCCAAGGGATGGAGCAAGGCATCCAAACGCCGCCGTTTCGGAAACCGGTAAGAAACCAAGCACAGTCCGCAGAAGCTATGAGCGTTTTGTCGGTTTCTCGGGAAGTGAATGAAATAGCCCTCGTACACTCATAGAAGCGCAGGTCATTCAGT # Right flank : GGCGCCACGCGATGCCTCATCCCGGTCCGGTTTGTCGTGGTTGCTTGTGGGCGCGTGTGTCCGAGAGGACGAGACGACGGGATTCACCACCACCGCGAAAGGGCGGCCATGACCGTACACCTGATCACCGTGGGTTTGACGTTGGCCAGCAGCGCGCGCCGGGATGAGGCGGCGCTGTTCGGCGCGACCGACAACGAGGACCTGCTGGCGCTCCTTCCAGAGTCCAGTGCGGCCTTCCTCCCGGAATCCGATGTGGCCGGTGCTCGCCGGCTGCTGGCTGGTGGTCTGACCAGCGGTACGCCGGAGGCCGCGGCATTGCGGGAGGCAGTGGTGACGGTATGTCCGGACCGTTGGTCCAGTCGGGCGAGTGCCGAGCTCACCACCGCCGCCCGCGCCAGCGATCCGGATGCCGTGGAGCTACCCGCCGTGGCGCGCGCACATCCCGATGACCTTGTCGTGCTGGTCACCAGCGACACTGTGCCAGGGATGCACGCCGGGTT # Questionable array : NO Score: 5.66 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.54, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 4399449-4398084 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHJT010000001.1 Lipingzhangella halophila strain DSM 102030 Ga0436959_01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4399448 29 100.0 32 ............................. ATGGGCTGGGGGGACTTATGGCCACCCCCGGA 4399387 29 100.0 32 ............................. GTCTGACAACATCGAAACAGAAGGGCTTGCTG 4399326 29 100.0 32 ............................. GAAGAAACCGAGGTGGTGATCCCGCTGCCGGA 4399265 29 100.0 32 ............................. GCGACTCCGCGCTGCTGTTCACCAGGGCGCTG 4399204 29 100.0 32 ............................. GAGCTACGGGCGCCCCTGCAGGTCGGCGGGGC 4399143 29 100.0 32 ............................. GGCAAAGGCGTCGGCAACGAGGTCGCTCGTGG 4399082 29 100.0 32 ............................. CTTCCGATACGCGCGGTGGGGGATCTGGATCT 4399021 29 100.0 32 ............................. AACAGGGACTCCACCCACGCCGGCCGCCAGGC 4398960 29 100.0 32 ............................. TCGATGATGGCCATCCATGCGGTCAGACCGGC 4398899 29 100.0 33 ............................. GACAGGTGGCCGTGCTCCCTGTTCTGCGTGTCG 4398837 29 89.7 32 TG..........................A GCGCACACGACATCAAGTGGCGCTACGACACG 4398776 29 100.0 32 ............................. CGTCGGTGCCCGCCCGCGGTGTGGAACGGGAC 4398715 29 100.0 24 ............................. AGGGATGCGCCCGTGACCACGGCC Deletion [4398663] 4398662 29 93.1 33 AA........................... GGATCTGGCCGACGATGCCCAGGCGTTTCTTGA 4398600 29 100.0 32 ............................. CCGGACGACTCGTGTTCTTTCTTGATCTCCGG 4398539 29 96.6 32 ............................T GGCGCAATCAGCACCAGAATCAGAAACGCGAT 4398478 29 96.6 32 .................A........... ACTGAGCGAGGGGGTGACCATGCCCTCCGCCG 4398417 29 100.0 32 ............................. GACAGCGTGAACTCGGCCAACCTGGTCAGCTT 4398356 29 100.0 32 ............................. CACCCGCAGCACCAGAAACGACCAGCCAGCCA 4398295 29 96.6 32 ............................G TCGACGCGTTCAGAATCCCAGTTGTAGTCCAC 4398234 29 93.1 32 ...........A............A.... CGCTCACCGATTCACGGACAGTGACCTTATGG 4398173 29 93.1 32 A..T......................... ATGGCAAACCTCCAAGGGGCACGTGGTCTCAG 4398112 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 23 29 98.2 32 CTGCTCCCCGCGCACGCGGGGATGGTCCC # Left flank : GAGGAGCGGGCGCTTCGGGTCCTCGGCGAGTCCGGCGAGGGCGGCGAGGTCACCTGGAACAAGATGGGCGAAGGCTGGTCGTGGATCCAGCGGCGCGGCACCGAGGAGGACCACGCCGCCGACGCCGCCGAGGGATGGGCGCAGATCAAGCGCGACCTGGAAGCGCAGACGTACCGGATGTACGTGCTGGACGAGTTCACCTACCCGATGAAGTGGGGCTGGGTGGACGTCGACGACGTCGTCGAAACCCTGCGCGACCGCCCGGGCCAGCAGCACGTCATCATCACCGGCCGCGACGCGGACCCAAGACTCCGCGACACCGCCGACCTCGTCACCGAGATGACCAAGGTCAAGCACCCCATGGACACAGGCCAGAAGGGCCAACGCGGCATCGAGTGGTGACAGCGAGCGGCATTTCGCCGGATTTACAACCTTTGCCGGAATACCGAGAAGTGATGCAAATCAGCCAAAAGTCAAAGTAGAATCCCAGCTCAAAGAGC # Right flank : ACCATGCTCTCCGTATGCAACGGGAACATGGGATTCTGCACGTGCACGCCATAGGTGACTTATTGCTTGCATAGCAATGTTCGTCTACTCTAGATACATAGCTGGGTCCCGTGGGGATCCGGAAGTGGAGCCAGGTGACCTGGGGCAGACCGGGAGCCTGGCTCGGCGTTTTTCGGGGGAACTAACACCCGGTATCGATCTCGATCTCGTAGACCTGGTTGTCAAGTACGTTTCGGTAAGCTGGATACCCGCGACGTGACGCCTGAACGGCCCCGGCCACGATGTCAGCTACCCACAGCAGCGGCTCGTTCCCGCCGTAAAGGTGAGCCACGTTGAAGTTGATCTTCCCCAAGGCACGGCGGGTGGCGATCACTGTCTTGATGTCCCACTTGTCTTGTTTGGCATTGCGTGCTTCCAGGAAGAGGGTTCCCACACCGTAGCCATTCAGTTCTGCGACGAGTGGCTGCAAGCACTTGGCTCGGGCGCGGTCTTGGTGCTTT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //