Array 1 22303-21967 **** Predicted by CRISPRDetect 2.4 *** >NZ_VNHT01000051.1 Nitrosomonas communis strain Nm2 Ga0105862_1051, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 22302 29 96.6 32 ......A...................... CCTCATCAATTACGATGAGAGACCCCTCAGCG 22241 29 100.0 32 ............................. AGATCAAAAGAAAATTCTGGGACAGCGTCATT 22180 29 100.0 32 ............................. CCACTTTCAGCGATTTAAGTTTTCAGTATGTG 22119 29 100.0 32 ............................. GAACCAAAAGCTATCACCCGGCAATGAATGCA 22058 29 100.0 32 ............................. GTCTTAACAGTATCTGGCAGTTCAGCATTTGC 21997 29 100.0 0 ............................. | AG [21971] ========== ====== ====== ====== ============================= ================================ ================== 6 29 99.4 32 GTGTTCCCCACATGCGTGGGGATGAACCG # Left flank : AAGCGTTTAAAAGCCGGATGGGATAATGAGTATTTACGTCGGGTTATTGGGATAATTTAAGCGCGATTGCCCTGAGATCTCACCACCTGCTGCGCCAGATAGTGCTGTACAGCCAGCTATACCAAATCCTGAGAGTCTGGGCGATGCTGGTCATCGTGCTTGAAAATGCTCCGCCCCGCTTACGCGGACGACTGGCTATCTGGTTACTGGAAATTCGTGCAGGTGTGTATGTTGGAAATTATTCAGTCAAAGTACGTGATTACATCTGGAACCAGGTAGAAAAAGGAATTGAAGAGGGCAATGCCGTGATGGCATGGCGCACCAATAACGAGGCCGGTTTTGATTTTGTAACGCTAGGCACTAATCGAAGGATACCAAATGAAATAGATGGTGCAAAGTTGGTTTCTTTTTTGCCTGAAGAAACAGGAGAAGCTCCTTAAAAATTTGGTAGAATTTTACCTTCCTTTTTACCGCTGAAATATCAGCGAGATAGGGGAAGT # Right flank : GGGTGAATCCAAGAAATGCTTGAGGGAGTACACCAGGGTTGTTAGCTAGGCCGTGTCTACAAAATTCTTTTTTCGGAGAAAATTTAATAGTAGACTGCATTACTGTAAGTCGTCTCAAGAATTAGTCTTAATTGTTAGCGCTATACTTCAACTCATTCAGGAGCGATGCCATGAAAATATGTAAGGTTTCTGTCATTTTGATTGTTCTTGCTTCATTGACTTCCTGCGCACACATGCATCCTCATCCAATGGATATGACGCAGGCTATCCAGAATGCTAAAACGCCTGCTGACCATGAAGCGCTAGCCAAACATTATGAAGCGACGGCGAGGGAGATGCAGTCAAAAGCGCAAGAGTATAAGAAGCTACTTGAGAAATACGATGCAAACGCTCCCCACTATGGTAGACAGGCACAAAATTTACAGAGCCATACTGAGGCTTTGATTCATCTTCACGAACAGGCTGCAAAAGCGAATATGGATATGGCTGATTCCCACCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACATGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 71576-72406 **** Predicted by CRISPRDetect 2.4 *** >NZ_VNHT01000007.1 Nitrosomonas communis strain Nm2 Ga0105862_1007, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 71576 37 100.0 35 ..................................... TCTAGCTTGCCCTATATATTCCACTTTCACATGCT 71648 37 100.0 37 ..................................... TCAGGATTGAGCAGGGCAGAAGATGGCCGAATAAAGA 71722 37 100.0 35 ..................................... CAGACCGTGCCAAACAATACATCGAGCAATAAACG 71794 37 100.0 34 ..................................... TGCACTGTGCCCATAACAAATACACTGTTTTTGA 71865 37 100.0 35 ..................................... AGACAATGGTGAGATGTTTGACGAAGAATCAGGAG 71937 37 100.0 37 ..................................... GGGAAAGCATGGCCAGGCAACAAAGGTGACCGTAGGT 72011 37 100.0 34 ..................................... CGCCGTGTTCAACGCCCCCGCTTGTATCTCTGTC 72082 37 100.0 37 ..................................... ATTCATGCGCTGACGGATATCGGTGCTGCCGGTACTT 72156 37 100.0 34 ..................................... ATTGCGCCGCCCACACTAACCAGTGCGCCCGTGT 72227 37 100.0 34 ..................................... AGCCGCAATCAGCACCTCAACTATCGAGGTTAAG 72298 37 97.3 35 ................................A.... TTTTATGCCGGTGACTTTGGCTGGATTCAGAATTG 72370 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 12 37 99.8 35 GTAGCGCCCAGCCAACGAGCTGGGCGAGGATTGAAAC # Left flank : CAAAACCGCCTTCGCCAATGCCGGACATACGCTTGGATATTTGCCGTCTTATTCTCCAGACTTCAATGACATTGAACCAAAATGGGCCCAGGCCAAAACAATCAGAAAAAAGGAAGGATGCTCCATCGAGCAGCTCTTTACCGCCTATGCACTTTAAATCATTTTATATGGGATAAGCTATAGAACGACGACTATTGACTGAGATTGATGAAAAAGAAGACAGTCTTCGTCTATATCGTTTGACGGAACCCTTTGAGTTACACGTGAAAGAGTATGGTAATGTCAAGTCGGTTGATTTTGATGGCCCTTTAATTGTCTGAGTTGCGCGAACGGAAAGTGATCGAAAAATTGCAGGATGTTCGCGCTGTTCCTAACTATATGAAACAAAAATATATTCCTGGAGTGAATCAGTTTATTTACTCTCTAAAAAAATTTGGTAGATGCCAGTTCGCGCATTTACACCAATTTTTACTGATGTATGATGATGTTGTAGTTGTACT # Right flank : CAAATAGTTCCAGGCTTCTCCTTTGTTGTTAATGGTTGGGTGGAACTTACTGTTCTATCAGCATGGGAGAGGCCGCCTATTCAGCCAAAGGTCAAGTAAAAGCTATTTAGGGGGGATCAATCTTGATTACTTTTTCTTTTCCGCAATCAAGACAAATGAAAAAAGCATTTTTTGCGTCGAATCTTCCGAACGTTTCTTGGAATGTGCTTTCTATCCTTTTTAACTTTATTGATCCGCAAAGACTACATTGATAATCATGAGGATCTGGGCTATGAAGTTTTTCCATATTTTCAGTAAATGTGAAATTTTCGAGCTTAATATTCTGAATTTCCGATTCGAGGTAGCAAATCATATCCGCTAAAGCGGAAACCTTTTTTCTGCATCCAGTAAGCTCCTTGTCATAAGCAACGAGCTGATCTTTCAAAAGCAGAAGCCGCTCTTTAATAATCAAAGTAGAGTCATTTTCATCAATAAGTTTTTCTGTATTTTCGATGAGCATG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGCGCCCAGCCAACGAGCTGGGCGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTAGCGCCCAGCGAACTGGCTGGGCGAGGATTGAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-14.60,-15.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //