Array 1 70884-70736 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRHE01000002.1 Mitsuokella multacida strain AM25-21AC AM25-21AC.Scaf2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 70883 28 100.0 32 ............................ AGCAGGAATCCTTTCGAAAACGCAAAACAGGG 70823 28 100.0 32 ............................ TGGAACCAGAACGAGAGCCACCCCTGCACGTA 70763 28 92.9 0 .......................G..G. | ========== ====== ====== ====== ============================ ================================ ================== 3 28 97.6 32 GTTAACTGCCGCATAGGCAGCTTAGAAA # Left flank : TAACTATGTAGTCAATGGTAAGAGTGCAATTGAATGGATTATGGATCGCTATCAAGTAAAAATTGACAAGAAGAGTGGTATCCTAAATGACCCGAATGACTGGGGGAAAGAGCATGATGAGCCTCGTTACATCCTTGACCTTCTCTTATCCGTTATCACAGTAAGTATCGAAACCTTGAAGCTTATTGGTGAACTTCCAGAAGTGGATTTCAATGAATGAGGTATTGCTCCTGTTGTAGAGCAATAGAAACAATACCTCAAAGGTCTATTCATCACCGCATTTTTGGTGTATAATGGAATTGAGATAGAAAAGAATTTCGTTTCAAGAGACCTCAAGGTTGATGTTGGCGATGGGATTTTTAGTGTAAGCCTTGCACTTGTGGGGATGCCGAAACCCTATGTAAATCATGAGTTTTGACAAGAGTGTCAAATTTTGGGTTCGATGAGGAGGGAATTGGTGCAAGTCAAGCCGGGTAAGGATAATCGCGTAGATAACTCCT # Right flank : CTTCTGTTTGTGAGAGTGTTGTACTACTGAGATTAGTCATGTGGAAAGTAGGTTGTCATGACGACGAAATTAATGTACCCGGCTGTATTTCATTCAGAGATAAACGGCGGCTATTCGGTTGATTTTCCAGATCTGCTTGGCTGTGTAACAGAAGGTGATACCCTCTCGGAGGCTATCGATATGGCCGAAGATGCACTCGGCATATACCTGTATTCTCTGAAGAAAGACAGGGAGACTTATCCGGAGCCGTCAAATCCGACTGATATCAAGGCAGAAGGTCGTTTTTTTGTTGTTCTAATCGAGTACGATGAGATGGCATATGTTCGTATGAAGTGATATGAGCTTTTCATATAGAGATCTTTTACAGGCATCTCTGGATGATGTGTCATGAAGATAACGAATATAGCTGCAAGAAGATCGATATCATTCAAGCTGAAAAAGAGAAGATATTGTTGCTTGACTGAGCAGAAAAGTAAAAAGCATCGCTTCGGCGATGCTTT # Questionable array : NO Score: 5.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTAACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 340873-337929 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRHE01000001.1 Mitsuokella multacida strain AM25-21AC AM25-21AC.Scaf1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================ ================== 340872 37 100.0 37 ..................................... CGGCATGAGCTCCGCCTTGACAATGCCGGCCTCGTCC 340798 37 100.0 36 ..................................... CAGTTCTGCGCCACTGATAAACTCGTATACGTTTAC 340725 37 100.0 35 ..................................... GCCACGGCTTCTTCCTTGCTCGCACCATTCTTGAT 340653 37 100.0 48 ..................................... ATACCTGCAACTGGCTCAGTGAGGAAACTTGATATCGTGTCTTACTCC 340568 37 100.0 36 ..................................... CTGAAGTTGAAGTTAAACATGATGTTCCTCCTTGCC 340495 37 100.0 38 ..................................... CCAATTGCTTTGACGAATTCACATAGATTACAAACCAA 340420 37 100.0 37 ..................................... ATATCAGCATAGAGACGCTGCTCATAAGATTCAGCCT 340346 37 100.0 35 ..................................... GACGAGAATGACCACAGAGAGCAATTCGAAAAAGG 340274 37 100.0 38 ..................................... GGGCGAGATGTCTGCAGAGCAACTTTGGGATACGACTA 340199 37 100.0 39 ..................................... TTCCGTGATAAGATGGTTATGCTTATCGTAGATCTCGTA 340123 37 100.0 37 ..................................... CGTGGCGGACGCAGAGGCGGCGGCCGAACTCCTCGCA 340049 37 100.0 37 ..................................... TCATGGGTGACACATGCACGTACTTCGCTGACAGAAA 339975 37 100.0 38 ..................................... GTACGGCAGCCACTTTTGTTCTTGTCAAAGGGAGCAGA 339900 37 100.0 36 ..................................... GCGCTGTGGAACTGCACGTCTTTCTTCACCTCGGCG 339827 37 100.0 37 ..................................... TGCGTCGAGGTCCGGATCTTACCGTCACCCTCTTCGG 339753 37 100.0 39 ..................................... TAACGAGTACTTCACTCCGAACGGAGTATGTACCTCCTC 339677 37 100.0 37 ..................................... ACCACTATCAGGTTCACTGTATTTAGATATAATAGCA 339603 37 100.0 37 ..................................... TGTCCTTCCCCAATTTTTGTCTTTTCTTCCCATTTTT 339529 37 100.0 39 ..................................... CATCTGGAACGTGATGCCGGTGACGACACCGACCAGGAA 339453 37 100.0 38 ..................................... TCCAGTAAAATTTATAAGCACAACAAATCCGTGGAGAC 339378 37 100.0 37 ..................................... ATAGAAAGGGAGAAAAATAAAAAGGGGCGGCGAAGAA 339304 37 100.0 38 ..................................... TCCAGTAAAATTTATAAGCACAACAAATCCGTGGAGAC 339229 37 100.0 37 ..................................... ATAGAAAGGGAGAAAAATAAAAAGGGGCGGCGAGGAA 339155 37 100.0 36 ..................................... GCTTTTGCTGAGATATAAGCCTCAGCGATAGAAGCT 339082 37 100.0 35 ..................................... GATCGGCGTGACGTTCAGTACAACGCCGTTACTGT 339010 37 100.0 36 ..................................... CACTGGAAGAACTCCTCCTCCAGCATCTGCTGAGCA 338937 37 100.0 38 ..................................... GAAGAGATACGATAACTCATGATAATGAGCCCATGCCC 338862 37 100.0 36 ..................................... GCCGTCAGCTTTTCGAAGCAGTCTTCGAATTTAGGC 338789 37 100.0 40 ..................................... TCCATGTTTCCTGTCGTGTAGGAAGAACCAAGGTCTTACA 338712 37 100.0 36 ..................................... TTCACGTAGAAGCGCGGATTCAGCGTATCGTCCCAT 338639 37 100.0 37 ..................................... GCCATAATGTTCAACTCCTTTCTGAGTCACGGCAGTA 338565 37 100.0 37 ..................................... ACGAGGTCAGCGCTTTTAGGAAAACGCAAAATTCAGT 338491 37 100.0 36 ..................................... CCTCCTGTTCATTAATAACAAAACAAAAACGGGAGG 338418 37 100.0 40 ..................................... CTGTTCAAACGAACCAACGCGCAGTGATCGAGTCCTTCAC 338341 37 100.0 36 ..................................... GCTTTTGCTGAGATATAAGCCTCAGCGATAGAAGCT 338268 37 100.0 39 ..................................... ACGCCGTACGCATTGGCTTTCGGATAGCGCTTCAGTACG 338192 37 100.0 38 ..................................... GCCTGGCGGTTCTTACCATTAAAACGCGCATTGAACGC 338117 37 100.0 38 ..................................... CCGTTATGGTCGATGTAGTTGACGTACATGTCCGTGGA 338042 37 97.3 38 .......................A............. TTGTGGTCCGGGTCGATGTTTGTGATGATCGGGGAGAG 337967 37 83.8 0 ......................CA.....G...C.TA | AA [337933] ========== ====== ====== ====== ===================================== ================================================ ================== 40 37 99.5 38 ATTGTAGCCCTCCTGATACCGTTGTCGGTATTGAAAC # Left flank : TCCATCATCAAGAATGGCGGTCCCATTATCGCGGCCATCATTGCGAATGGAAAACGAGAGTTCATGGAGTTGATCGGTGATAAGGGAGCAGCGTCTCAGGCAAAAGACGATATGGTGAAGAACTTCTGCCAGTCTGGCAGTGAGCTCAGCGATGAAGAGATTGTGGAGCGACTCTGCTACATGTATGATTGACATGATATAAGTGATGAGCAGCAAGCAGATGACGTTTGCTGCTCATTTTTTGACTGAATTTGACAAAATCTTCATATGATGGTATACTATCGAAAGATAGAAAACCTTTTTGACCGCCCAAAAGGCCGGAGGTTTTCCGATTTTTTACCGAACACCGCGAGCCCTTGCAGGACAAGCGTTTCGGAGGTCGTCGCCACGCAAAAAGCGAACAGAGCTTGCTGCCGGAGACTCGAAAAAGTCGGAAAATCGATGAGGTTTTCCATTTTACTCATCTGGGGCCAGTAACCCCAAGGGCTCAGGGGCACAGT # Right flank : GGAAAGACAGTTGTCTTTCCTATTTTTGTAACTTCACAGTTTTTTTGACGCACATGAAAAGTCCCCGTCTGCTATACTGAATCCAATGATGATTCAGTTGGCAGGCGGGGATTTCTTTTGTCTAGGCAGGAGTTTTATTAAAGTATGTTGAATTCTATATTTGTTTATGATGGCAGTCTGTGATAATCAGTATGGTGGAAGAGAGATGAGGTCATGGGGGATATATTCATCAACCACAGTAATCATCCTTCGACGTTCTGGTCGGAGGAGGAAAGACGTGCAGCGGAGGTGTATGGCCGGATTGTCGATATGGCGTTTCCAGCGATTTCTCCGTCGGCGAATGAGCTGGAAGTGGATGAGTTGGCGGAGGCGAATGCGGCGTGCATCATCGCGCAGGAACCGGCAGTCGTGCTCTGTCAGGGGGAATACACCTATACATATGCGCTGGTAAAGCGCCTTTTAGCGAAGGGAGTCTGTGTCGTAGCGGCTTGCAGTGAACG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGTAGCCCTCCTGATACCGTTGTCGGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.00,-7.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA //