Array 1 39253-44319 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGQAS010000028.1 Shewanella algae strain LC2016-1 scaffold26, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 39253 28 100.0 32 ............................ ATTTTACTGAGCCTAACACGCAGTATGTTGCT 39313 28 100.0 32 ............................ TGATCTGTCAGTTCGGCCACGTTTATACATCC 39373 28 100.0 32 ............................ AGTGTAGGCATCAAGTCCAGCTGCCGAGAACC 39433 28 100.0 32 ............................ AATTGCAAATTTACCAGTTGATATCTCATTAG 39493 28 100.0 32 ............................ AATAGGATGGGTGGATCACCATTACACGGATG 39553 28 100.0 32 ............................ AGTGGGACAATGTTGGATCGGGTACTGCTTTA 39613 28 100.0 32 ............................ ACTACACCGACGGCATCATGCACCAGTGGGAC 39673 28 100.0 32 ............................ TGCTGATAAAGATGCCGAGTTGCACCGTTGGA 39733 28 100.0 32 ............................ AACTATGCGCTCAGACGCTTTACGCTCAACCC 39793 28 100.0 32 ............................ GACTTGGTTGAGTGCCAGCCGCTGAGTTACAC 39853 28 100.0 32 ............................ TCTTTAACGAGCCTATGTCCCATCGTATATTC 39913 28 100.0 32 ............................ CAGCACCAGCGCCCCAGTTTGGCGGTCAGGCC 39973 28 100.0 32 ............................ TAATCAAAGGTGAAAATAAAGAGGCATTTCAA 40033 28 100.0 32 ............................ ACAAGCTCATCGTGCATGTTGATTGCTAACTC 40093 28 100.0 32 ............................ TGCTCAATCGTGTCACTCAGCTTGCGCATCTT 40153 28 100.0 32 ............................ TATACGATGGCGGCGCGCTTGGCGGTGCTTAT 40213 28 100.0 32 ............................ TTTGATGAATGCCCACATGTTAACCTCTACTT 40273 28 100.0 32 ............................ ATCCATGTCGGAAATATCCGTCTTGCATATAT 40333 28 100.0 32 ............................ ACTAAATGACGAGCTGTTAGCCCACCATATCC 40393 28 100.0 32 ............................ GCTATTGATGCGGTACATGCCTTGCCTGGCGA 40453 28 100.0 32 ............................ TTGTCAACGTGGCTGTCCTAACTACAGGCTTT 40513 28 100.0 32 ............................ TTCATGTTGTTTTCCATGGATAACCGCATCAT 40573 28 100.0 32 ............................ TCTTGCTAACTTCCGTCACCTTGAGCGTGCGG 40633 28 100.0 32 ............................ TCATCAACGTGCGGCTCGTGCTGCTGAGAATG 40693 28 100.0 32 ............................ TGAAGAACCCAGCAACACCGGTGTCGTACAGT 40753 28 100.0 32 ............................ AATGCAACATATTTTGAAGTATTTTACAGAAT 40813 28 100.0 32 ............................ GTTATCGACGTGTTTCCAGTGAGGCTTAGTGT 40873 28 100.0 32 ............................ ATCGATAGCTCGTCAGCTACTTATGACACTAT 40933 28 100.0 32 ............................ ACTCAGCATACGTACAGTTATTGTTGTCAATA 40993 28 100.0 32 ............................ TTCACCCCGGCGTCGTAGATGCAGAACGCCCC 41053 28 100.0 32 ............................ ATCAAGACAAGAGGAAGCGCAAAGAAAGCGGC 41113 28 100.0 32 ............................ CAATGGGGATTTTCAGTGTGCTGTTTGTGAAG 41173 28 100.0 32 ............................ ATGTAGCGACGGTTATATTCGTCTTCGATGGT 41233 28 100.0 32 ............................ TAATAGGGGGCAATATGAAAGGGCTGTTTTCG 41293 28 100.0 32 ............................ CAGACAGGCGGTCAGGCATTAGGGGTCAGAGA 41353 28 100.0 32 ............................ TTGCCGAAAAAGAGCAGCGAATGCGCCAAACA 41413 28 100.0 32 ............................ ACATAGCCGTCAGGGACACCGCTGGTTTGGCT 41473 28 100.0 32 ............................ CAGATGAAATGGCCGCCGATAGCTCATTAACA 41533 28 100.0 32 ............................ GCAACGCGCGACAAGTGCGCCTTGATTCGATA 41593 28 100.0 32 ............................ TTAACTGCTCAAGATATGCCTCGGCTTGTTTT 41653 28 100.0 32 ............................ GCAGACTAGACAGACTGGCCATTCCAATCCTT 41713 28 100.0 32 ............................ GCTAATCATGGCGCTGAACTCTGCATACAGCT 41773 28 100.0 32 ............................ TTATCGCAATTCCAAGGACGATGGCGCGACAC 41833 28 100.0 32 ............................ AACAGCCGCTTGCGAGAGTATGTGGCGAAGAA 41893 28 100.0 32 ............................ AGTTTCAGGGATTTTTATGGTTTCGCGGATGT 41953 28 100.0 32 ............................ GCACTCGCCAAATTCATCCTTATTTTGTGGAT 42013 28 100.0 32 ............................ TTCATGGTTCCAGTAGAGCACATTTACCTTGA 42073 28 100.0 32 ............................ ACCTGCGACAGTGCCTAGTGAGCCAACTTATC 42133 28 100.0 32 ............................ AGTAAGCCTGCTGGTAATTGCGAACGCCTTTG 42193 28 100.0 32 ............................ TGTGGTATCGGCTGTGCTTTGAACCTGTCCGG 42253 28 100.0 32 ............................ TGGAATGCGGCGACCCGATACCGGATGCCAGA 42313 28 100.0 32 ............................ GCCCAGCCAGTACCCCGGCGTTGTTGCCGTGC 42373 28 100.0 32 ............................ TGTTGACCTATTGTAATACGGCAATTTCCTTG 42433 28 100.0 32 ............................ TACGCGAAATGAAGAGCAATCAGATATTGAGG 42493 28 100.0 32 ............................ CGCGGCACGTAAAGCCACAGCAGCCACGGCCA 42553 28 100.0 32 ............................ TATCATCGCTCAGCGGCTCAGGAACAAGAGAT 42613 28 100.0 32 ............................ GTCAATATCGAGCATGGCTTTGCAGTTCGTAG 42673 28 100.0 32 ............................ TTTTCGATGTTGCAATCACTTGGCAGCTGAGC 42733 28 100.0 32 ............................ AGGCATGCTTCCCACCTGAAAATATTGCCCAA 42793 28 100.0 32 ............................ TTATTGCAGTATTATTAGAAAAATAATTAATA 42853 28 100.0 32 ............................ TAACAGGGTGCCAAAGTGATGAGCAGGCAGAA 42913 28 100.0 32 ............................ TATGTATAGTTTTCTTTACGTTTGCAGGAAGT 42973 28 100.0 32 ............................ TCATCCCACGCCATGCCAATGTCGTTAGATTG 43033 28 100.0 32 ............................ ACCGAAGTGACAGTTACTGAACATACAGTCAG 43093 28 100.0 32 ............................ ACCAATAACGAACGGTACGGGGTTTTACACAA 43153 28 100.0 32 ............................ TGACGATGATGAAGAAGTACTGGCTCCAAGCA 43213 28 96.4 32 .............T.............. CGGACTTTGTTCGCATCGACGGCGTGCCGTAT 43273 28 100.0 32 ............................ TATACGGGCATGCTCGCTGGCCTCGTTGAAAC 43333 28 100.0 32 ............................ TTTCTGGTTTCCCTGGCCAACTCTGAAAACTC 43393 28 100.0 32 ............................ TGTGAAGAGCGCTGGCTATCAGTCGAAGGCTC 43453 28 100.0 32 ............................ CTGTTTGAGAACATGGCGCGCTGGTGTGATGA 43513 28 100.0 32 ............................ GCTTGGTGTGGAGCCTGACGGTTTTAAACCCC 43573 28 100.0 32 ............................ TGGGGCATTGGTTTCAGTCACCATGGCGTAAT 43633 28 100.0 32 ............................ ATTAGTCTTCCTGTTGGTTGGCTATTAATGTT 43693 28 100.0 32 ............................ TCATTGCGAAGAACGATGACGCCATGGCTATT 43753 28 100.0 32 ............................ GAATTGCCAACCTCGCTCCCTAACCCCCCAGA 43813 28 100.0 32 ............................ TTATATTCTGTTGCGACGAAGCAAAAATATTC 43873 28 100.0 32 ............................ ATGAAGATGATTCAATACATTTTGGGCGCTAC 43933 28 100.0 32 ............................ ATGCTGTGTGATAGTCAGTGCCTCGGTAGTAT 43993 28 100.0 32 ............................ CTTCATTGATGTTTAGGTCCATGAACGCGCTA 44053 28 100.0 31 ............................ TCAGCGTCCTTCGGCATTTTTTGAGCTTTGC 44112 28 100.0 32 ............................ TTTCTCAGGCCGAACTGGCGGCGCTACTTGGC 44172 28 100.0 32 ............................ CTACTTTGGTGAAACGATAGCGATCCATAGCT 44232 28 96.4 32 ..........A................. TGGCGCAGATAACGTGGGTCCACCCATTTGTA 44292 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 85 28 99.9 32 GTTCACTGCCGCCCAGGCAGCTTAGAAA # Left flank : CGAGTGATGTTTCCTACGTGAGCTTTGTACGCAAACAGGTGAAATCGCCTGAGCGGATTGAGCGGGCTATGCAGCAAAAGGCGGCATTATGGGCGGCAAAGTCGGGCAAGCCGCTGGCCGAGTGCTTAACCGATCTTGAAAAAAGCAAACCGACAGGGCAGTGTGATTTGCCATTTATCTTCTTGCACAGCCAGCAAACGAAACAACGTTCGCCGGACAAAAACAGCAAGTTCCCGCTGTTTATCGAAAGATATCCGCAAAGTACACCAGTGGATGGGCAGTTCGATTGCTACGGGCTGAGTCGTAAAGTTAATGGTATTGCATCGCTTGGAACAGTACCGAACTTTTAAGTATCAAAGGGTGAGTTTTACCCTTTATTTTTGCTCTTTAAAAATAAGCTTTATATACAATCAGTTACAACAGGTGGTATTCAACAGGGTAAAAATAGGTTTTTTATCCTAACCACCTGTTGTGACTTTCTTTTATTGCTTTATTCTATT # Right flank : AGTTCTTCTGGTGATGACCTTTCCCCCGAATTTATCACTCGGCCCCAGCAAAATCCGAACGTCCTGCATTTGTGGGACTGAAGAGGCCGAAACTGAAGTGATCTAAATAGCGGCCCGGCTCAAGGCAGCATATCTACTCGAAGTAGTCTGCTGGCGCTGCGACCTTTGTCGTCGCTGACCGATAACTGGAAGCGTCCTGCTCTGGACGGGCGCCACTCCAGGGTTTGGCCCGGCAGGCTCTGGCCGAGCAGGCTGTTACCGGCAAACCAGTAGAGTATTTGGCTGTCGGAGGCGGCGTCGGCCTTGAGGGCGATGTGTTCATTGGTCATGCTTTGGCGCAGGCTGTAGGTGACGCCCTTCAAGGGGGAGCGGATAAGCGGGGCCGAGTAGCTAACCGCGACTCTTTGGCTGCAGGCGACCGGAAGCTCCGGCGGCCTCCTGCGGGGTAAACCTGCCTGCTCGAACAGGGCCGCCAAGTCTGATGGCCAGAAGGCAAACAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCCCAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCCCAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 73746-72938 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGQAS010000060.1 Shewanella algae strain LC2016-1 scaffold28, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 73745 28 100.0 32 ............................ CATCGAATGACTGCGGCAATAGCCCCACCAAT 73685 28 100.0 32 ............................ GACAACTGTAAGGGAAAGCACTGTAACAATGA 73625 28 100.0 32 ............................ TGTTGAAGCGCCACTTTTGATAACCCTGAAAT 73565 28 100.0 32 ............................ GCATAGGTGAGATGCATGAGTGGCTAGAGCAG 73505 28 100.0 32 ............................ GCAGACGGCGGCAAAGCGCAGGGATATTTCCG 73445 28 100.0 32 ............................ ATAGTGCCGCTTCTTTGTGCGACTGCAAACCG 73385 28 100.0 32 ............................ ACGAACAATAGCGCCAGCGCGCCCAAAGATAG 73325 28 100.0 32 ............................ GTCTATGATCGGCAACTCATCTAATCGTGATT 73265 28 100.0 32 ............................ TTTAACTTGGCGCATCCTGGCTTCGTGGAATT 73205 28 100.0 32 ............................ AATAACCCGGCTTGGGTTTGGTATGACTTGGT 73145 28 100.0 32 ............................ TTTAAAAATGACTATCAAGAATGGAGCAAAGA 73085 28 100.0 32 ............................ TTTATGAACCAAGCCATGCTGGCATTCAAAAT 73025 28 100.0 32 ............................ AACACGCATGGACTCAATTTGAAGCTATTTTA 72965 28 96.4 0 ....................T....... | ========== ====== ====== ====== ============================ ================================ ================== 14 28 99.7 32 GTGAACTGCCGAATAGGCAGCTGAAGAT # Left flank : TTTTCACACTCAGTGACATTTCAGAAGTCCCAGATACGTGTAAAGAAGTACGGTTTAAACGAAACCAAACCATCGCCAAGATATTTGCCGGGGACAGTAGAAGGCGATTAGCCCGTTTGAAAAGAAGAGCTGAAGCCAGAGGTAAGCATTTCACGCCTCCTATCCGGAACCAAGCCAAAGAGCTAGGCCCATTTCACTGCGTGGCGGTCAGCAGTGCAAGCACAAGCCAAGACTTTTTACTTCACATACAAAAAGAGACAGTGAATCAGGCGACATCGATTGAATTCAATCAATACGGACTCTCGACTAACCAAAAGTTCACCGGAACAGTGCCAGATCTGAGCCCATTCAAGCCGAACGATACCCGTTAACCCTTTTTTGTGAGCAACGCTTAACCGCCTGAATTTATGCCATTTTCTTCCGCATCTTTTTTAGATGGTAAAAATAGGATAAATTCATCAACCTATTGAACACTAGTGAAATTTTAAATAGTGCTCATA # Right flank : AAAAACAATCGTTTCGATGTTTAAGTTAATGCAAACAACTGCCGAATAGGCAGGGCTTGTTCTACTTACATGACAAGTGAAAGATGCCCCCTTAAGAGGGCATCTTTTTTTATGGGGTAGGCTAGGACAGGTTCTCCAGATCGTTCGTCGTTCAGGCGAATTATGGTTACACTGAGCTAGTACACACGCAGGTATAGAGCAAAGCGAATGGATACGGTACTGCGGCACAAAGTTTGGGAAGTCTATGTAAAAGAGAAAAGGCACCCGATCATTGCCTCGAAAATTACACAACCCAGCAGCGATGGGGTGCAACTACACGATGAAGCACTACTCAAACGCACCATAGCCGAACACACCCACGGTAACGAAACCTACATCACATGCTCTCAATGTGGCTGCGGGCTATTTTATCGCTCCGGCAACAACGCCCAACGCCGGGCAGCCCACCTTTATCACAACACCAAGTTCGCAAAAGACTTGTCACTCACAGAAAACTGCCC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAACTGCCGAATAGGCAGCTGAAGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA //