Array 1 517765-519012 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAIZAD010000004.1 Salmonella enterica isolate 0559_17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 517765 29 100.0 32 ............................. CGCCGGTTCAGGGAATGGTTGCAGGATAACCC 517826 29 100.0 32 ............................. CGCGGACACAAAAAGCCTCGCATAAACGAGGC 517887 29 100.0 32 ............................. AACGACACGAACTATGACGCGCTATATAAATA 517948 29 100.0 32 ............................. CCGGATTTTGCAGTTATGACGAGGCTTCAGAG 518009 29 100.0 32 ............................. CGCCCAGAGGGGCGCTATTCAATAACGGTTAA 518070 29 100.0 32 ............................. ATTTGTCCGGTGCGGAAGGAAATCCGCCCCAG 518131 29 100.0 32 ............................. CCCCGGTTGGCTTCGGCAAAACTGCAATTGCA 518192 29 100.0 32 ............................. CCATTTTTGATCATCTCCTCCAGCCTGCTGAG 518253 29 96.6 32 .............T............... CACTGGAGATATAGCTGCTGTCGTCATCGGGT 518314 29 96.6 32 .............T............... TTCGCGCTCAACTTATGGCGGTATTAAACACC 518375 29 96.6 32 .............T............... GTTAATTTGTTTTTGTGGGGAATTATTGTTGG 518436 29 96.6 32 .............T............... CCTGAGGAGATATTCACCTTCCTGCATTTCAT 518497 29 96.6 32 .............T............... TCTGGTGGCTGCCTCATATTGTTGCGCATCTA 518558 29 96.6 32 .............T............... GTCAAATAAATATGAGTGAAGAAGCCAAAGCC 518619 29 100.0 32 ............................. CCATAAGAGCATCCCCGCCATCCGGAGGGGAA 518680 29 100.0 32 ............................. AAAAAAATGCGATCGGTACTCAACCCGGCCAC 518741 29 100.0 32 ............................. CGCCGGTTTCGGTGGGGGCTGAATCCTGAACC 518802 29 100.0 32 ............................. TGGTCGCAGCCTGGCCTGTTGCCGTAGAATCG 518863 29 96.6 32 .........T................... AGTTACTGATGCAGACTGCGGATCTTAATCGG 518924 29 100.0 32 ............................. TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 518985 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 21 29 98.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ATGAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTA # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGAGCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 535569-537552 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAIZAD010000004.1 Salmonella enterica isolate 0559_17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 535569 29 100.0 32 ............................. AATCACGAATTATCCCCCCAAGGAAAGTCAGG 535630 29 100.0 32 ............................. ACCGCTACAACGCGGACGCCGTATTCATGGAT 535691 29 100.0 32 ............................. CCGATGTCGTGAAAAAACTCAACGATGCACTG 535752 29 100.0 32 ............................. AACCGCCGCTACTGTAAAGGGTGTTGCTGATG 535813 29 100.0 32 ............................. TGTCCGATTATTTTATCGCTATTTGTGAAACT 535874 29 100.0 32 ............................. CGATCAGGAAATCAAGGAGAAGCGGGTGCGTA 535935 29 100.0 32 ............................. AGGTGCAGGCGCAAATACGCCGCCCCTGCACC 535996 29 100.0 32 ............................. CCACCATTCCTGGCGGTTGGTGGATATTCGTA 536057 29 100.0 32 ............................. CCGCCCGGGTATGATTTCATTTTTTGGTTGTT 536118 29 100.0 32 ............................. TTCTCAAGGGCTGGATTGTCAACGCCGCCAAC 536179 29 100.0 32 ............................. CAGGGGTAGGAGAGGCCCCGAACACTGATAAC 536240 29 100.0 33 ............................. GCTGAAACCATTATGTTTTCAACGCATGACGGC 536302 29 100.0 32 ............................. CCATCTCACCGCTCAGCTATCTACGGCGAAAT 536363 29 100.0 32 ............................. CCGGCAATCTCCGCGCCCTGATAGTCAGCGAA 536424 29 100.0 32 ............................. CCGTCAGGCTACCCGCAATACCAATTACCGGC 536485 29 100.0 32 ............................. ACGCCGCTATCGCGTTTTTTCCGGTGAGTTCA 536546 29 100.0 32 ............................. AGGTGAAAAATGAATAACGACGTATTGAACAG 536607 29 100.0 32 ............................. ATGACGACCTGATTTCGATTGACGCGCTGACT 536668 29 100.0 32 ............................. TTAAGCGCATAACCGTTAAAGAATTGCATGAG 536729 29 100.0 32 ............................. AACCAGAATTCGCCTGGCTCAATGACGTTTCC 536790 29 100.0 32 ............................. TTCCGTCTTGGCTGTTTGTGTCCACGGCGATA 536851 29 100.0 32 ............................. CGTTTTACACACTCCTGGTGTGACCGCGGCGA 536912 29 100.0 32 ............................. TGACCGGTAAACCAGAATATTGGTTTTTTGCG 536973 29 100.0 32 ............................. ATGAGTACGCCGTGTGCCCTCAGCACCCGAAA 537034 29 100.0 33 ............................. GGCGATCCGGTCGAGGCTGCAAAGTTCTGCGGC 537096 29 100.0 32 ............................. CGGGCGAGCGCTATGCCGTTCCGCGACCTCCT 537157 29 100.0 32 ............................. TCCCCTCCAGATATACACCCATAACCGGAGAA 537218 29 100.0 32 ............................. GTTGTCTAGGTCTTGATTGCTTAGCTTCGCCA 537279 29 100.0 32 ............................. TGAATACGTGGTTATTTATACTGATACTAATC 537340 29 100.0 32 ............................. GGGGCGTGATGGCGGATATTAGCAGAGGACCA 537401 29 100.0 32 ............................. GTGACAGTGCGGCTCTCTGAGTTGAGCACAAA 537462 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGTCTGAAAA 537523 29 93.1 0 A...........T................ | A [537549] ========== ====== ====== ====== ============================= ================================= ================== 33 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAATTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGTTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGCGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGTAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //