Array 1 600023-600352 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP088911.1 Yinghuangia sp. ASG 101 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 600023 28 100.0 33 ............................ CTCGCCGCCGCCGCGCTGTTCCTCGCGAGCGAC 600084 28 100.0 33 ............................ CGACGTGACCGCGGTCCCGCCGATCGTCACCGT 600145 28 100.0 33 ............................ CTCGGTTGCCTCATGGCGCAGTTCGCCCGCGAC 600206 28 85.7 31 ....................ATG.C... GTCAGCAGGTCAGAACCTGTTTCGGCGGGTG 600265 28 100.0 32 ............................ CACCCGGGCCGCGGCGTCACGGGCGGGCGGCG 600325 28 96.4 0 .............G.............. | ========== ====== ====== ====== ============================ ================================= ================== 6 28 97.0 33 CTGCTCCCCGCGCACGCGGGGGATGTCT # Left flank : CGCGATCTGGCGCACCGACCGGTCCAGCAGTGCCACCAGCACGGATGAAGGACGCGGGAGAGGAGGAGCAGTTGGCCTGGCCATGGCGGGATCGTCGCACACTCGTGGAGACGGGCGAACGGCGCGGCAATGCCATGGTTGAGGAGACGGCCTCCGTTGGTGGGTTTGGCCGACGGCACTCACGGCCACGGGTGACGGTCGGGATACTCCACGGCGTGCGATCATTCCCGCCGCACCGCCCGCAGGACTCCACGGAGACCGATCCGCACAGTCGGCAACCCAACGATTGAATTGGCCTGGTGCGCCAATCAACCTGTCATGTGGGGCGTTCGTCATGATGGCGAGACACCCCGAAACCGACCACCGGCACGCTCAAGCCGAGCATAGCGCCGCGATGCCAACCCATTCACCGCAAGATGATGCAAACGCCCGAAATGCCAGACTCTCGCAAAGTAGCGCGGAAGTGCGCCGACGGCGAGTATCGCCGCAGGTCAACGAGA # Right flank : TCGGGGGCGGTGGGTGGGGTTGTCAGGTTCTGATCGGGGGGTCCAGGTGGTAGAGCTTGGTGGCGGTGTGTTGGAGGACCTTGGCGACTGTTTCCTCGGGGAGGCCCTGGAGGGAGCGTTCCATGATGTCGCGGGGGCTGGGGGACTCCGAGGCCGGGCCCGGGGAGAGGCTGGTGGCGTGGGGGAAGTCGGTTTCGAACATCAGGTTGTCGCCGAGTTTGTCGATGACCGCGCGCATGGAGTCCTGTTCGAACCAGTACATGCCGTAGATCTGGCGGCGCAGGTACTCGCTGGGGAGGGCGCGCTCGGGGTATTCCTTGTGGGCGCCGACGTTGAGCCACTGCCAGTCCATGCTTTCGCCGAGGAACGGGAGCCAGCCGGCGCCGTTTTCGACGGAGACGAACTTGAGGTCGGGGTAGCGGTGGCAGACGCCGCTGAGGATGACTTCGGCGATGTTCTGCGCGTTGCCGAGCAGGACGAGGCTGCTTTCGCGGGTGAAG # Questionable array : NO Score: 3.11 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGGATGTCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 3811727-3809098 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP088911.1 Yinghuangia sp. ASG 101 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 3811726 37 100.0 35 ..................................... CCGCGCTCCAGCACGGGCAACAACACCAGGGATTG 3811654 37 100.0 36 ..................................... GATTTCCTCGGCGCAGTTTTTCGCGGCCGTCTTGGT 3811581 37 97.3 35 .........T........................... GCGGCTGACACCGGCATCTCGCCATCCAGCATCTC 3811509 37 94.6 35 ...................G..G.............. GTCGGCACCCAGTACACGGACGTGCGGATCTGCGT 3811437 37 89.2 35 .............GC....G.............A... TCGGGGATCGGCTGCCAGTCGAACTCGGGGCAGAA 3811365 37 91.9 36 ..............C..A.G................. GTGATGGGCACCCACAACGAACTCCAGGCCGCGGCC 3811292 37 91.9 37 .......A.....CC...................... CAGGCGGGCGCGTCGGCGTCCAGGATCCTGGCGAAGA G [3811276] 3811217 37 94.6 36 ..............C..................G... ACGTCGTTCGGCACGATCGCCGAATCCGTACTGGGG 3811144 37 91.9 35 ...T..........C........T............. ATCGAGATCGGCGACAACGGCGAAATCCGCGTCGT 3811072 37 91.9 35 ..............C......A.....A......... CGCGCCGGCCGGGCCCTCGCGGCGCGACCACAGCC 3811000 37 94.6 34 ..............C....G................. TTCAGGCATCGGTACCCACGCGCGGACAGCCGCC 3810929 37 89.2 35 ...........T..C....G.......C......... GACCTCAACGACTACGGCACCCCGCTGCAACTCAA 3810857 37 89.2 36 .C........T....G...G................. ATGACTGACAACGGCCACGAGATGAGTCGCCAAGCG G [3810842] 3810783 37 75.7 35 .....A..A.....C.T..GT..G.....GG...... AAGAATCCCACCAAGGACATGGCCGGTACGGCATC 3810711 37 86.5 37 A.......T.....C....G.....A........... GGCGGGTCCGCGATCGCGCTGTTCCGCACCGCCCGCA 3810637 37 89.2 35 .C......T.....C....G................. CTTCCACCCGCGTAAGCGAGGAGACATCGATGGAC 3810565 37 91.9 36 ...........T..C....G................. GACAAGACCTTCGGCCGCGGCACCGACGAACTCGAA 3810492 37 89.2 37 .....A....T.T......G................. TCGTACGTGATGATCTTGGTCGGTTCCTGGCGAACCA 3810418 37 91.9 31 ...................G..G...........G.. GTCTGCCAGTACGCCTGGAGGTGCGGCTGTC 3810350 36 83.8 35 ..C...........CT...-....GA........... GGGTTAGCGTCGACCCACACATACTGGCAGCGACA 3810279 37 81.1 36 A........A....C...AGG...............T GACGCGGACGGGACGCCCCTCGACCTGTCGGCGATG G [3810249] 3810205 37 70.3 23 .C.....CT..T.CC.A.AGT...............A CTGGCCGACGGGTGGCTGGTCGG Deletion [3810146] 3810145 36 83.8 33 .G........-...C....GTA............... GACACGGTCAACGTCACGCTGACCGGGCAGGGC 3810076 36 75.7 35 AA..T..-G..........G.....A.......T..T AGCCTCGGCAAGGTCGACCAGCGTGGCCGTTTCGT 3810005 37 83.8 35 ..........T...C..T.G..G.....A........ CGGGCTCGCGCGGAGCACCATTGCACCGAGGCGAA 3809933 37 86.5 36 A..........T.A.....G............C.... GACGCTGGGGACTACATCGAGCTGCGGGCGTGGCAG 3809860 37 86.5 37 ........T.T...C....G.A............... AACGAGTACGGCACTCAGTTCCGCAAACTTGGCCTTG 3809786 37 94.6 35 ...................G...T............. CCCATCGTCAAGGGAGGCACCGACCACTGGTGGAA 3809714 37 100.0 36 ..................................... GCCGAATACCCCACTCAGTTCCGTGACTTGGGCCTT 3809641 37 94.6 35 ..........A.................A........ AACGTGACCGGCAGCAGGCCGGCGTGGTTCAGGTT 3809569 37 94.6 35 ..............C....G................. TTCGTTCGCTCGGTCGGAACGAACGAATGACCGAA 3809497 37 94.6 35 ...................G...T............. CGGGGTACGGCGATGGTGCCGGGCGTGAGCCTGAA 3809425 36 91.9 37 ..........TT....-.................... GTCCCCCCGGCGAGCCAGGCGGCGGCGATGAGTTCGG 3809352 37 91.9 35 .........AG........G................. GCCTACTCCGCGCACACGTGGGGAACGGGGTCCGG 3809280 37 91.9 35 ...................GT.T.............. GGAATGACGTCGATGCCGACGCCGCCGATCGAGAT 3809208 37 97.3 37 ...........T......................... ATGACCGACAACGGCCACCGCATGTCTCGGCAGGCAG 3809134 37 91.9 0 ..............CT........T............ | ========== ====== ====== ====== ===================================== ===================================== ================== 37 37 90.1 35 GTGGCGGTCGCCCTTCGGGACGACCGAGGATCGCAAC # Left flank : CCGCATCCTCGCCCGCCACCTGCGCGGCGAACTCCCCGGCTACCTGCCCTGGACTCCCGCATGATGGACGTCCTCCTCGCGTACGACGTCGACACCACGACACCGGAGGGCCGACGGCGCCTGCGCCGCATGGCCAAACTCTGCGAGGGATACGGCTCACGCGTACAGAAGTCCGTCTTCGAAATCGCCACCGACGAAGTCGGCATGCTGATGCTCATCGCCAAAGCCGAGGCCATCATCGACGAGGAAACAGACAGCGTCCGCCTGTACCGGCTCCCCAAGAACGGCTTCAACCAAGTCCAGACCCTCGGCACCGCTTTCAAGGTCGGCCACCGAGACGACTTCGTCTTCTGACGCCCCCGCCCACTCTTGGTTCGGAACCCCAAGTGCACATGCGACACGCCACCCTGGCCGAACTCGAATGCCTTCTATGTCTGATTCACCCGCCCGGTCACGGCTCAACTGCCCACCGGAATATGCTGTTTTCGCTGCTCAGGCAG # Right flank : GCGGCTTCCGCTGCCTAATCCCAATACCAGTGACTTTGGGCTGTTTGGGTCGTTGGGTGTGGTGTGCCAAGGCCAGGACAGACGAAGTCGTCGGCGGGTGGGCGGTTCTCGGATCGGATCGCGATCGGGGTGTTGACGCGGGCGTTTCCGCCGGAGTTGGTCGATGAGGTGGTGGCGGGGTGCGGGCGGACCGAGCAGCGGAGCCGGTTGCTGCCGGCGCGGGTGGTGGTCTACTTCGTGCTGGCGATGTGTCTGTTCTCCGGTCAGGGCTATGAGGAGGTCGCGCGGCTGTTGACGTGGGGTTTGGACCGGTTGGGGCGGTGGGAGCGGGGCTGGCGGGTGCTCACGACGGCGGCGATCGCGCGGGCCCGGGCCCGGTTGGGGCCCGAGCCGTTGGAGGTGTTGTTCGCGCGGGTGTGCCGTCCGGTGGCGGGGCCGGACACGCCCGGGGCGTGGTACCGGGACTGGCGGCTGGTCGCCGTCGACGGCACGACGTTCGA # Questionable array : NO Score: 4.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.50, 5:0, 6:0.25, 7:-0.00, 8:1, 9:0.11, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTCGCCCTTCGGGACGACCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGCGGTCGCCCTTCGGGACGACCGAGGATCGCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.60,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [39-52] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.24 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 3820661-3819776 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP088911.1 Yinghuangia sp. ASG 101 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 3820660 37 100.0 36 ..................................... GGCTCCTCCCAGCGTTGCCACCCTTCGCCGTGGCGG 3820587 37 100.0 36 ..................................... ATCCACAGCGGGGCGGTCAGGTTCAACGGGTGCCAT 3820514 37 100.0 35 ..................................... GGTGACCTCGGTCAGCCACAGCACACGCTCACCGG 3820442 37 100.0 37 ..................................... ACCGCCTTGTCCAGCTCCACGCCGGACACACGCCACG 3820368 37 100.0 36 ..................................... AGCAGCTCGGAGCCGATGGCGAGGTCGACGGAGACG 3820295 37 100.0 36 ..................................... TTCGGCTGCCTGCTCCGCGTCGGGGATGTCGCTCGC 3820222 37 100.0 35 ..................................... GCATAGGCACTGATTCCGACGCACCCCGCCATGAA 3820150 37 100.0 35 ..................................... ACCCGCATCAGCGCGTCCGGATCAGCGGCACCGGT 3820078 37 97.3 35 A.................................... GTCGTCGAAGCCGGTATCGCGCTGCGTGAGATCCG 3820006 37 97.3 36 ........................T............ TCGTTCGCCACGGCAACGACGACGACCAGGCGCCCC 3819933 37 100.0 36 ..................................... GTCGAGCAGATCAACAAGACCGAGGCATACCACCCT 3819860 37 86.5 11 C...............AA...........GC...... GCGGGCGGTCG Deletion [3819813] 3819812 37 78.4 0 ....AA..T.....T..C..C.C.............G | ========== ====== ====== ====== ===================================== ===================================== ================== 13 37 96.9 34 GTGGCGGTCGCCCTCCGGGGTGACCGAGGATCGCAAC # Left flank : CGGTCCCCAACCGGGGGCACCCCCGATAGCCGCGATTCACCAGGCGTGGCACACGACACAGGTCTTCCACGGGCCCTCGCGCCCCGCGATTGCAGCGTGATCCGAAATCCCGTCCCCGCTACCGGCACTGCACATCGAGACTGCGTGTATCGCGGTTGCGGCGCTCGATCACGGGAGGAGGGATCGCGTAACCCATAACCAGGATTGAGTACGACGCCCCAGAGAGGCCCACGCCCTCATCCCAGCAAGTAATCCGCTCGCGATCAACGACGATGGGGCCGCCTTCTGTACACCGTTGGAGACTTCGGGTGTCGTTTGACGGTCGGGCGTCGACATGGCCTCATCTTCTGAAGCCCCTGTGTCCAGCGCCGGTTCGGAACCCCAAGTGCACATGCGACACGCGCCTGCGACCGAACCCGAATGCCCTGTACGCCCTATTCATCTACCGCGTCAACAGCTAACGAGCTGTCCTTCTAAACTATTTCCGCTGCTCAGGCAGC # Right flank : TTGGCAGGAGCGAACGGCCGGAGGCGGCCTCAAGCCGCAGCTGCCTCATGAAAACCCAGAAGCGGCCATGGAGTTTCGTCAACCACACCGCTGTTGTCGGTGCGGCCGTCTAGAGTCGGTGGACCGGTCAGGTGGGGTACCTACCGGTGTATATGCGTGCATTTTGCGTGTCGTCTTTGTGTTCTCCTGGGGGATTGATGCATTTATGGGCGCACAGCCCTAACCATCTCGGGGTTCGTCACGCGCTTGCCGATCACTTGTACGGATCGGCTGAGTTGGCGGGGGAGTTCGCAAGCGGTTTCGATGCCGAGTCCGCGGCCCGGTATCTGACGCTGGTCCACGATGTCGGGAAGGCCGGCTGTGCCTGGCAAGCCGGGCTCGCGCGCGTCGGTACGGGCGGAGGCCGCGTGGGCGGCGATCACAAACTCGCCGGTACTTGGCTGGCGTCTCGGCATCTTCCCAAGACGTTCTCCCGGATTGTGCTGGGTCACCATGGCGGT # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:-0.14, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTCGCCCTCCGGGGTGACCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGCGGTCGCCCTCCGGGGTGGCCGAGGATCGCAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.40,-17.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 6903582-6901361 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP088911.1 Yinghuangia sp. ASG 101 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 6903581 28 100.0 33 ............................ GGGCCGCACGGACGCCGGCGGCGGCCCCCACGC 6903520 28 100.0 33 ............................ CGCGGCGGCACCGCCCAGGGCGGCGAACGTCGC 6903459 28 100.0 33 ............................ CGCGGTCCGGAAGGCGCCGGGCTCGACGATCAA 6903398 28 100.0 33 ............................ CGGCGACGGCCTTACCGACCGCGTCTTCACCGA 6903337 28 100.0 33 ............................ CACGAGCAGCGCGCGGTGGTCGTCGATGATGCG 6903276 28 100.0 33 ............................ CCACATCGCCGAACTGGACGACGCCGCCGAGGA 6903215 28 100.0 33 ............................ CGACGACCAGCGGGCACCGGGCGTTGTGGACGA 6903154 28 100.0 33 ............................ ACGACGCCGCCCCGAGGCGACTGCGGCAGCCAG 6903093 28 100.0 33 ............................ GGCATTCGAGGCGGTCCCGGACGCCCATGGCGT 6903032 28 100.0 33 ............................ TCTGCTCGCCGCCGCCGATTACCTGGATGTCGC 6902971 28 100.0 33 ............................ CTCGGCGCGGTACGCCACCGGCGCGGTGTGGAA 6902910 28 100.0 33 ............................ GGTCAGGCGGCTGTGCAGCTCGTTGGCGACGAC 6902849 28 100.0 33 ............................ GTCCACCGACTCCAGCGCCGTCACCGCGCCGAA 6902788 28 100.0 33 ............................ GGCCCAGCAGCGCGGGGGCTTGGGCTGCCCGGC 6902727 28 100.0 33 ............................ GCCGACGCCCACGCCGCCCAAGCCGTCCCCATC 6902666 28 100.0 33 ............................ GGAGGTTCGCCATGGCCGAGGCCGTTGTCCCCA 6902605 28 100.0 33 ............................ GGCCACGTCGACGCACAGCCTCCGGCACGGCCA 6902544 28 100.0 33 ............................ TACTTCCGGCTCCGGCCGCAGTGGATGACCGTG 6902483 28 100.0 33 ............................ CGCGCGGCTGGAGAACGTACCGCTGCACGAGGA 6902422 28 100.0 33 ............................ GTTGCTTCATCCACCGGACGAAGTCGCCCGCGG 6902361 28 100.0 33 ............................ CTCGACGCCGTCCTACAAGCCGCCCACGACGAC 6902300 28 100.0 33 ............................ ACGGCCCCCACCCCTGGAGGGTCCGCTTCCGAC 6902239 28 100.0 33 ............................ GGCCTGTGCTTCCTCCCCGGAGAGTTGCGCGCC 6902178 28 100.0 33 ............................ GCCGCGCGGGCTCCGGGGCCTGTTCTCCCGTAA 6902117 28 100.0 33 ............................ CTCGCCCGCATGGTCGGCGTCGCCCACCCCACC 6902056 28 100.0 33 ............................ CTGATGGAAGATCCTGCACTTGATGAGAGGGTG 6901995 28 100.0 33 ............................ CCAGCCGCGCGAGCACCCGCGTCCCCCTCTTCC 6901934 28 96.4 33 .......T.................... GGTGGCGAGGCCGAACGCGGTGCCGAAGGCCGA 6901873 28 100.0 33 ............................ GCTATGGCTCTCGACACTTCTGGAGGCTTCTGA 6901812 28 100.0 33 ............................ GGCCGACACGTGGAAGACCGACCGACAGTTCAT 6901751 28 100.0 32 ............................ TGGCGCCGTGGGTGCGCCACGCCCGCCCACGG 6901691 28 92.9 33 ...A.......................T GTCCCAGATCCGGACGGCACCGCCCGGCTCAAT 6901630 28 96.4 33 .................A.......... ATGTTCATCGGCCACACTGTCCCCTGCGGCCAG 6901569 28 100.0 33 ............................ CGTCGCCGACCGCGCCGAGGGTACGTGCATCCC 6901508 28 92.9 33 .............TT............. GGCGAGCGCCACCGAGACGCACCGCTTCGCGGC 6901447 27 82.1 33 ...A....TA..........-......G GGATGTAGCCGACCTGATCGGCACCGCTGGCAA 6901387 27 85.7 0 ...........G..T-........C... | ========== ====== ====== ====== ============================ ================================= ================== 37 28 98.6 33 GTCGGCCCCGCACCCGCGGGGATGTTCC # Left flank : GGACGAGTTGACCCGCGCCGCGTCCGCCCTATACGGCGACGGGACCGCCTTCACCGGCCCCAACCCCCGCGGAGCCACCAGGACCGTTGACGGCGGGATGTTCGTCTACCTGGTCATCCCACGCAGCGAATGCGTCTACATCCGCCAGCTCACCCCGAAACCCTGACAGTCACTTCGACGAAGCGCGCTCGCCCGCCGAGCCAGCGCAAGATCAGTCGGGACGAACTCCCCTTAAACACGCGTCCGTTCGTGCGACATATGGCATCTGACCTGTGGAAATGCCTAAGCTCCGTAACTGCGCCTCTACGGCCGCATCTTTGCCACCCGCCATATGCTGCTCCATGCCCCACCCTCCACATCAGAGACAGACGAGGCGCAGCCTGGAGCCCCGCACCGGGAACGCCCGCGAAGCGCCGCTTCCCCTGCCCCGAAGCGAAGAGAAGCCAAACCCAGTGAATGAAATCGAGGCCGCACGCCGCAAAAACCGCAGGTGAGGAAGC # Right flank : GTCGGGGACGAAGGGCCTTGCCCCGCGTTTGCCGGGGGTCGGGGGCGCAGTTCGGCACGTGTTACCACCGTTGCGGTGTGCTGGGAAACAGGCACGTCACCGAGGCGCGAAGTCCTTGGCGACGAGGGCGTTCGCGAGATTCAGCTGGTGTGGTGTCCGGGGATCTTTGTGGGCGGTTGCCTGAAGCGTCGTGACCGGCTTGGCTATGTCCGGCCGCAGCCGACGCCCGAAAAGTCTGTGGGAGGGCCGTCAGGCGGCCCCCCGTGATCGGATGTGCGGAATTCGGCTCCGATGTCGCATGCAGACAGGTCGGACTCGTCCGCGGGTGAATGCTGTGGCTGTCGTCGAGGCGGTGGAGGTCACGACGGCGCTGACGTGCGTCGCTTGGTGTTTCCTTCGATGCGGGAGCGTGTGCGTCGGACGGTTTCGGCGAGTCCGTCGCGGTGGCCGTGGACAGCGGCGACGCGTGCGGTCAGGTCGGAGGGTGAGGCGTGCGGGTG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACCCGCGGGGATGTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCACCCGCGGGGATGCTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 6907277-6904633 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP088911.1 Yinghuangia sp. ASG 101 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================== ================== 6907276 28 96.4 33 ...........................G CCGCGATCGCCCTGGGGTGCGCGAAGAAGAAGT 6907215 28 96.4 35 ...........................G GCCGGTGTCCTGGATCAGGCGGGCGGTGAGCGGGT 6907152 28 96.4 33 ...........................G GCGACAGCCTGCCCGACAAGGTGTACGCCAAGT 6907091 28 96.4 33 ...........................G CGGACGTACGCCCGACCGCGGCACGGCAAGGGT 6907030 28 100.0 32 ............................ GCGTACGCCGCGCTCCCCGTCGCCCCGACGGT T [6907004] 6906969 28 96.4 33 ...........................G CGAACGAGTTGACGGTGGTCGGGGCCTTCGCGT 6906908 28 100.0 33 ............................ ACAGCTCGGTGTACGGGTCGGGGCCGCGGCGGT 6906847 28 96.4 33 ...........................G CGTCAGCGGCGCCAACCTCGTCGAACTGCAAGT 6906786 28 100.0 32 ............................ CGTCCGCATGGCCAAGGACCGCCGCTACAAAG 6906726 28 100.0 33 ............................ CGTCACCGGGTAGGTGCGCTTGCCCGCGGAACG 6906665 28 100.0 33 ............................ CGCGCCGACCACGCAACCCTCGCCGCGACCGAG 6906604 28 100.0 33 ............................ GGCGGATTTCTTCACCGGCGTCGGCTACGACCC 6906543 28 100.0 33 ............................ GCCGTGAAGGGTGTGTGGAACAACGCGTGGGAG 6906482 28 100.0 33 ............................ CTGGACCTTCGGGGCGGCGGCATCCAACTCTGA 6906421 28 100.0 33 ............................ GGAGATGGTGACGTCGACGCCGCCGCGGCGCGC 6906360 28 100.0 33 ............................ TGGACGCTCGCCCATCTCATGGAATGCCTGACA 6906299 28 100.0 33 ............................ CCCGCGTTCGATGCGATCGGCGCTGCGGCCTCA 6906238 27 96.4 33 ............-............... GGCCCCGACGGGCCAGGTCGCGGCGTGGATTGG 6906178 28 100.0 33 ............................ GGCCGATCTGCGCGACAAGTACGGGTCTGCCGC 6906117 28 100.0 33 ............................ TTCCCGCCGTGATGCCCTGGTCCGCGAATGCCC 6906056 28 100.0 33 ............................ CGCCGTCCGGGATTCGGTCCGCGTCCTCGATTG 6905995 28 100.0 33 ............................ AATTGGACGCACAAAGCGCGGGCCCCGGGGACC 6905934 28 100.0 33 ............................ GGGGACCTCCAGCTCGATGGTGCCGCCGTGGTC 6905873 28 100.0 33 ............................ TACCGTGGACTAGGGATTCACCGTGCACAGCCG 6905812 28 100.0 33 ............................ TCGCGACGACGGCCGAAACGCGCCCGGGTACCA 6905751 28 96.4 34 ...........G................ GCCGCCGCGGGCCGGGGTTGCCGGTCTTGTCGAT 6905689 28 100.0 33 ............................ CTCGACGCGGTCCGTCTCCAGCAGATCCAGGTC 6905628 28 96.4 33 .................A.......... CATCACCGGGCGGAAGGCCTACCAACTCCTCGC 6905567 28 96.4 33 .................A.......... GCCGCGTTTCCGGGCGTCGACCTGTTTCGCACG 6905506 28 89.3 33 ...C...T...C................ GGGCCGCGCCAACATGTCGGCGTTCCTCGATGC 6905445 28 100.0 33 ............................ GTTCGCGCCCCCGATGCCACCGCAGCTCCTCGG 6905384 28 96.4 33 .G.......................... CGACGGGCCACCCGCGAAGAACTGCCGCCATCC 6905323 28 92.9 33 .........A....T............. GCTACGCGGACGGGTCGGCCGGGGCCGGTGCCA 6905262 28 96.4 33 ..............T............. CTGCGCGTCCTCGTCCGGCGCGTGGACGACCTG 6905201 28 96.4 31 ..............T............. TGGCGTCCTCCGCGAATTGATGCGGGTGGGC 6905142 28 89.3 33 .AGT........................ GCTGCACGACGATCCGAAGAAGACTCACAGGTT 6905081 28 92.9 30 ........A....A.............. CAGCTTGGTCGCGCGCACTTCCCCGTTGCT 6905023 28 82.1 33 ..T.............GC.C....A... TCACCTCGGTCGCATTCGCGATCGTGGTTGTCG 6904962 28 92.9 31 .................A....C..... CTGCTGCGCTCAGCCTCGGCGCACCGTGCGG 6904903 27 82.1 33 .......AA-....T.......C..... CTGGAGGCGACGCTGGAGCGTCGGCACGAGTTC 6904843 28 78.6 33 ..........TG..TA.A......G... AGTCCATGAAACGCTGGGTAACCCGCTGGTAAG 6904782 28 96.4 33 ..............T............. AATCGTGTACGCCCTGTCCAAGGGCACCGCCCC 6904721 28 96.4 33 .............T.............. CGTGCTCTGTGTGCTGGTCTGCCCGCAGACGCC 6904660 28 89.3 0 ...A......T.G............... | ========== ====== ====== ====== ============================ =================================== ================== 44 28 96.3 33 GTCGGCCCCGCACCCGCGGGGATGTTCC # Left flank : CTCACGCCAGGACAACCCCACCGCTCGCACTGCTTGCGCGCCGTCGGCGTCCATCCGTTGGAACGCCGGGGTCGCCTTCCCGCAGTCGTGCACACCGCACAACCACACGAATAACCGCCGACCTCGGCCGCCCCCACCCGCGAGCCGTTCAAGCAACCCGCGCGTCGAAGGAGCCAGGAAACGCTCCCACATCAACTCCGCGACGGCCGCCGTGTCGAGCAGATGCGACAACAACAGATTCGTCGTACCCCCGGCCTTCTGCTTCGATTTACCCCATAACGCACCTAACTGCGCCACCACGACGGCGTCTTCGCCACCCGCCGTATGCTGCTCCACGCGCCACCCTCCACAACAGAGACAGACGAGGCGCAGCCTAGAGACCCGCACCGACAACGCCCCCGAAGCGCCGTCCCTCCCGATCCCGAAGCAAAGATGAAGACCCAAATCCCAGTAAATGAAATCGAGGCCGAACGCCGCAAAAACCGCAGGTGAGGAAGTGT # Right flank : GGCGCGGTCGCCACGAGCGTCGGGCTCCGGCCGCCTCTTCGTGGCCTCGGCTCTGTCCGCACGCAATACTGGGGGCGGCCATCGGCGGGCCGCCCCCCGCAAAATGAGGGAGGAGACCACTGTGAGCGCGCAGGTTGAGCACCCCGTGGCAGTAATGCCGCGACCGGAGCGAACGGCAGAGGCTCTGCGATCGGCGTTGGCGGCGCTCGCCCCCTCCTGGATCCCGGAGTTTGACCGGTCCCAGGATGAGGCGACCGACAAGGCCGTCGAACTCGGGGCGCTATGGCCGGTGCACGCGTGGCTGCGGCACTGGGCGGCGATCGTCGAGATCGAACGGCACCCGGACACCAGCTACCGCTACCGCCACGCCGAGCAGATCGACACCCTCAGCGACGACCCAGAAGTCCGCAGGCGGGCTGTTCGAGTTTCCGGCGACATCTACCGTGCCGCGCTCGATACAGTCGGTGAGTGAGTTGGAGCTGGGAGTACGACCCCGACGA # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.65, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACCCGCGGGGATGTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCACCCGCGGGGATGCTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [34-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 6 6917083-6918817 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP088911.1 Yinghuangia sp. ASG 101 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 6917083 28 100.0 33 ............................ CGTCCGGTCGCGGAAGAGCCGGGGGTCGAAACT 6917144 28 100.0 33 ............................ CCGCGGGGCGCCGCACGGCCGTTCGGTGCGCCC 6917205 28 100.0 33 ............................ CTCCTCCGGGAGGCCGGTCTGGCGCAGGCCGAC 6917266 28 100.0 33 ............................ CTGTCAGAAATCTCCTGGTCCGCGGCATGCTCG 6917327 28 100.0 33 ............................ CGTGAGTACGCCCCCGGCACGTTGCGCCGCAAG 6917388 28 100.0 33 ............................ CTTCTGCCCCGTCACGAGTTTGGGACCGGGCCG 6917449 28 100.0 33 ............................ CGGGCAGGCCGGCCCGGCGTGGTTCCTCCGGGC 6917510 28 100.0 33 ............................ TCGCTCTCGGCCGACGACGAGTTCTGCGATTTC 6917571 28 100.0 33 ............................ CGTCGGGTAGCGGACGGCCTTCAGCCGCGAGTA 6917632 28 100.0 33 ............................ GGCGGTGGGTCGTGGCGGACGTCGTGGAAGTCG 6917693 28 100.0 33 ............................ CGCGTGGCAGTACTTCCAGGCCACCGCCGATGT 6917754 28 100.0 33 ............................ ATCTGATCATGGGCTTCACCGCGCTGTTCGAAC 6917815 28 100.0 33 ............................ GTTCGCGCTGGAGGGGCTTTCCGAGGCGCTGGC 6917876 28 100.0 33 ............................ CCCGATCCGGGCGATCCGCGAGGTCAGCCACGA 6917937 28 100.0 33 ............................ CGCCGCAGCGACTTCGACGAGATGGTCTCCCGC 6917998 28 100.0 33 ............................ CGGCCCTTGGCCGCGGGCTTCGGCGAGACGTTG 6918059 28 100.0 33 ............................ GGGGCGGCGAGCGATACGCCGTCTCTCTCAGGC 6918120 28 100.0 33 ............................ GGGCAGTCACAGCACCGGGCTTGAGGAGACCGC 6918181 28 100.0 33 ............................ CAGAGTTTTCCAAGAGCCCGGACCGGGGGAGCC 6918242 28 100.0 33 ............................ CCCGATCGAGCAGGACATGTTGGACGCGCTGCT 6918303 28 100.0 33 ............................ GGCGTCGCGCACCGACGGCCGGACGCCGCGGAC 6918364 28 100.0 33 ............................ GGACTACGACATCCCCGCCTCCTCCCCCGAGGA 6918425 28 100.0 33 ............................ CCACGAGGTCTGGGCGGAGCGCCCGACCGCCCA 6918486 28 100.0 33 ............................ GACCGCGTTCGACACCGCGAAGACCGGAGTCGG 6918547 28 100.0 33 ............................ GCCCCCGTGCTTGAGGGTGAGTTGCTGGAGGAG 6918608 28 96.4 33 ......T..................... CGTGTTCGCGGTCGGCATCGATGTGGGCGGCCT 6918669 28 75.0 33 ..T.....T.T.TT.......CC..... GCGCCTCGCGATGCTCCTGTGCACGGTCAAGCT 6918730 28 100.0 33 ............................ GGACGAGATCACGGCGGCCGGGTACGAGCTGGC 6918791 27 89.3 0 .....G.......T...-.......... | ========== ====== ====== ====== ============================ ================================= ================== 29 28 98.6 33 GTCGGCCCCGCGCCTGCGGGGATGTTCC # Left flank : GAACAAACCGGATCCGTACCCAGCGGCGCCAACTACGGCTCACAACCCCGCGACCCCCTGGACGCCGCAGCGGACCAGCACATCACCATCATCGGCCCCGAACTCGACCCACCACCAAACACCGGAACCGACGCATGACCGTCATCATCCTCATCGCAGCCCCCGAAGGACTCCGCGGGCACCTCACCCGCTGGATGGTCGAAGTCAACGCCGGCGTCTTCGTCGGCAACCCCAGCCGCCGCGTCCGAGACCGCCTCTGGGAAACCCTCGCCACCCGCATCGGCGACGGCCAAGCCGTCCTCGTCGAACCCGCGACCAACGAACAAGGCTGGGCCGTACGCACCGCAGGCCGCGACCGCTGGCAACCCACCGACTACGACGGACTCATCCTCTCCGCCCGACGCCGAGGATGAACCCACCAACACCCCGGGCGGCAGAGGAGCACGGACCAAGTGAATGAAAACAGCCCCATCACGCGGTAAACCCGCAGGTGAAGAAGT # Right flank : CGATGATCTGTTACCCAGCGCGTTGATCGCAGGCCTCTGGCTGCCTGAGCGGTGGCGTGTTGGGATGCCAGTGCCGGGTGCGGTCATGGTTTGTGTCTATGTTGGCGCGGAATGCGAAAAGCGGCGCATACGGCCTTGCCGTCTTGGGTGGGTTGGACGAACCACATCTCCGCCAATGCGGTGAGCAGGTGGAGGCCACGGCCGCTCTCGCTCATTGGAGTGGGCGGTTTGGGGTTCACTTGTGTGATGTCCGGCAGGGGGTCACAGACCCGGGCCACGGCGTGGCGCGGGTGGACTTCGATGATCAAGCGCAGTGGGCCGGGTGTGTGTTCGACGGCGTTGACGACGAGTTCGTTGACGCCGAGCACGATGTCGTCCAGCTGCTCTGGGGAACGGCTGCGGTAGGCGTCCTCAACTGCCCGTCTGGCGACAGCGGTTGGTCTGGCGCAGGTGGTCAACGGGACGGTCAGATGCTGGAGGGGGTAGGTGAAGCGGGTCGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCCTGCGGGGATGTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCACCTGCGGGGATGGTCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //