Array 1 65244-61305 **** Predicted by CRISPRDetect 2.4 *** >NZ_VAMZ01000005.1 Acinetobacter baumannii strain M19606 M19606_L1.R1.clean__paired__contig_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================== ================== 65243 29 96.6 31 ............................G TAACGCTGGTACTCTGTACGTTCTACGTTAA 65183 29 100.0 31 ............................. TCAAGAGAAGTTTTATAGTGTTCGTGTATCT 65123 29 100.0 31 ............................. TTCACTGGATTACGTTCTAAGCCTTCCTGAA 65063 29 100.0 31 ............................. ATAAGCCTTATGAGGTAGATACTTCAAAAAT 65003 29 100.0 31 ............................. ACTCGGTCACAAGGCGTAGTCTACGGTTTTT 64943 29 96.6 31 ............................G TATCGATACGCCAATGAAGCTATCAGAGTTC 64883 29 96.6 31 ............................T CAATTGGAACGATATCAGGCTAATAACTACG 64823 29 96.6 31 ............................G GTACAAGCCATCACATGTATCTGCTAGTTCA 64763 29 100.0 23 ............................. ACACATGCCAGATGGTTCAAATG Deletion [64712] 64711 29 96.6 31 ............................G TATCGATACGCCAATGAAGCTATCAGAGTTC 64651 29 100.0 31 ............................. GTAGGAAGCTCTACATCTAGTTTTAAATAGG 64591 29 96.6 31 ............................T ATGAGTGAGGGAGTAGCAAATGTCTGAACAA 64531 29 100.0 31 ............................. AGAAAGCTGAGCAATTGCCTGCTTTGCCTAT 64471 29 100.0 31 ............................. ATCCCATTAAAGAAATCATTTTGGTCTTGGA 64411 29 100.0 31 ............................. AGATCAGAGGCACCAAGCAATGCAGACTCCC 64351 29 96.6 31 ............................T TTACCCTTGCCATGCTTGCCAGAATTAGAAT 64291 29 96.6 31 ............................T ACCACCCATTGAACGTTAGCCATATGAGCAA 64231 29 96.6 31 ............................T TCCATGCTTCACATAGAAATTCATTGCAAGT 64171 29 96.6 31 ............................T ACTGCTTCCCAAGTCAGTAAAATGATTGTTA 64111 29 100.0 31 ............................. CAGTAGTATCATTTCAATCGAGTAACGTTGA 64051 29 100.0 31 ............................. AAAAGACCCAAAGAAATTCGCTCGTTTCTTT 63991 29 96.6 31 ............................T ACACGGCGATCTTGTTTAATAGTCTGAGTTT 63931 29 96.6 31 ............................C AATACAAACATTTGACTGCACATCTGGAACA 63871 29 96.6 31 ............................T AGAAAGCTTGGAAAACAAAGGTGACTGTAAT 63811 29 100.0 31 ............................. GAAACATCTGTTATTTTTATTGATGAGGTAC 63751 29 100.0 31 ............................. CCCTTTGGATTGAAGACTCTGCTTTTGCTGC 63691 29 100.0 31 ............................. TTCACCAGCCTCGGCTAGACTTGATGCTCCT 63631 29 100.0 31 ............................. AGCAAAATTCAAAAGAATTACCCCAGCCAAG 63571 29 96.6 31 ............................T TGGTGTGCCTGCGCCCACTCAAGCCATGATT 63511 29 96.6 31 ............................T TTAACCGAGATCAAGAAGTAATTGCTTGGGC 63451 29 96.6 31 ............................T ACAATACGACGTGATAATGCAACTAAAGCCC 63391 29 100.0 31 ............................. CGGTAAAATTAAGTTACCTGCTAAACTTGTG 63331 29 100.0 31 ............................. ATCAAAGCCTTAATCGCTAAATCAACTGCTA 63271 29 93.1 31 .............C..............T TTTGTTTATACGGTTAATAAATCAGTACAAT 63211 29 100.0 31 ............................. TTACACAGGCATGGCAATGAAAGTGTTCTTT 63151 29 96.6 31 ............................C CTCGTGGAAAAACTTAAAAGCCATCTTCGTA 63091 29 96.6 31 ............................T TCATCTAAATGTTTTTGACGTTCAGCTTCAG 63031 29 96.6 31 ............................T AGACAGCTCATTTAATCCGGGTGAGAAACAG 62971 29 96.6 31 ............................T AGATAATGTTGAATGGGTTGAAACTACCTAC 62911 29 100.0 31 ............................. GTTCAGCATTCCCCTTCGGGGTCAACGTCCA 62851 29 100.0 31 ............................. TTACCCCTCCTTACTTTCTGCTTTAACTTCT 62791 29 100.0 31 ............................. AAACACCAAGCCATAAAATTAATTACAGCAA 62731 29 96.6 31 ............................T GTTTTGCTAATTTATCAATATCGATTTTCAC 62671 29 93.1 31 ...AC........................ CAGGGGTCAAGTTCAGAAGATTTACGTTACA 62611 29 82.8 31 ...GC.......CC..............G GTATTAGTGCGAATTGGCTTTTAGCCCACGC 62551 29 89.7 31 ....C.......G...............T TAAATGCTCAACTATTTCTGTAGCTAATGGA 62491 28 82.8 31 ...GC....T...-..............T TCAAATGATTTAATGAGCTTGTAGCCATTTT 62432 29 89.7 31 ...GC.......T................ CGTCTTCTAATGATGGACTTTAATCCAATAT 62372 29 82.8 31 A..GA.......TC............... TCTCACTGAAGATATGACCATCACTTTCTTC 62312 29 82.8 31 ..CGC.......CC............... AGCCATTTACTTTGATAAAGCGTCACATAGC 62252 29 96.6 31 ............................T AGGAAATTCTATCGGCCCAGCATCTACAAAT 62192 29 100.0 31 ............................. AGAGACACATCGTTAATAATCTCTTGTGCGG 62132 29 100.0 31 ............................. TGAGCAAATTATCAATTGATCTATCTGCAAG 62072 29 89.7 31 ............CC..............T AGACGGTGTTACCTGTAGGCGGTGTCTACTG 62012 29 89.7 31 ...TC.......C................ TCGTTTGAATAATATGGACAATCCAGCCAAT 61952 29 86.2 31 ....G.......TC..............G CAGCATCAAACGAGATATTGGCTAACATATT 61892 29 79.3 31 ...G......A.CC...........C..C AAATAGTTTTAGCTATCTGAGCATTTAATTT 61832 29 89.7 31 ....G.......C...............T TCATCACGTAGCCTTTTACACGCATCTTGCG 61772 29 93.1 50 ....................C.......T GTACGCTGAGTATTGATATTGACATTCAGGGCATTCAGAATTTGGCGCTC 61693 29 89.7 30 ....G........C..............C CAGTTTGCTGAAAATCACCAATACGGTCTT G [61667] 61633 29 79.3 31 ...TC......TCC..............G ATTCTATGAGCGTGACCATGACTCTATTTAA 61573 29 89.7 31 ...GC.......C................ TTATCCAGATAAAACCATATCTACAAAGTGG 61513 29 93.1 31 ....G.......................G ATCATCTACAGTGATTGAATAAACGGTTTTT 61453 29 82.8 31 ...GC......TG...............C AACGACGACGCCGTGTGTTTGTTATCGGAAG 61393 29 79.3 31 ...GC....T..TC..............C AAGTAGGATTTGCAGCCCCAATAGTCTTTAT 61333 29 75.9 0 ....G....T...C.A........AT..T | ========== ====== ====== ====== ============================= ================================================== ================== 66 29 94.5 31 GTTCTTCATCGCATAGATGATTTAGAAAA # Left flank : ACGTTGGGCTAAAACGTTATACAAACAACTTGCTAAAGGCTTTGGAGTTGAATTTATTCGTGATGAAGGAAAAAACTCTCAAGACTCTATTGCGGATATAGCCAACAGCTACCTTGATCATGGAAACTATATTGCCTATGGCTATGCAGCAGTTGCTTTAAATGGAATGGGAATTAGTTTTGCCCTCCCTATTTTGCACGGTAAAACACGTCGTGGAGGTCTAGTCTTTGACCTAGCGGACCTAGTTAAAGATGCTTTTGTTATGCCAGTCGCTTTTACATGTGCAGCAAAAGGATTAAATCAAAAAGAATTCCGAATGCAGCTTATTGAAACATGCCAAGACCAAGATATTTTAGATTACATGTTTAGCTTCATTACTGACATATGTAGTAAAATCAAATAAAATCATACATTTAACCCAAATACCTTATAACGAAGTATTTTCACTCATTAAAAACTTATATAATTGATTTTAAGAGTTTTGTTTTAACTTAACTCTA # Right flank : TTGAATCTTAAAAAGAAAAAACCCCGAAACTTACGTTTCAGGGCTTTTTCGAATCTTGGTGGGATGGCGTCAATTGAACTGATAAAACAAATAATTGTTTTTTAAAGTTAATTTCAATTCAAAAAATAACAGTGTACACAATAGTGTACAAATTATTTGTTACTAGGGCATTTCTCTGAGTTTAGTTGTCATGCTGGGTGACGAACTCAGGAGTTAAAAACACTCCTTTTAGTGGATCGGATTATGAGGCTCGTTATTTGGCTTCAATAAATTTATTGAGCGCAAAACCATATTTGGTGATTGGATTTTAAATCTTGAATTAACTTAGCCGTTCAAGTGGCTGATTAAGTAGCTTGGTCGCGTTTTAAGTGTGAGCAAGTTATAAAAATCACGAAATACTTTCGATTGCAGATACGTGCATCCAGTCGCGTGTACATTGCCGAAGTTGAGGATTTAGATGGTGGGGGGTATCCCTATGTTCAGGTTATTTGCAGAAGTAA # Questionable array : NO Score: 5.56 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.00, 8:1, 9:0.52, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [50-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //