Array 1 16-1244 **** Predicted by CRISPRDetect 2.4 *** >NZ_GG774574.1 Vibrio cholerae RC385 supercont1.20, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 16 28 100.0 32 ............................ TTACCTTTTATCGAGAAGAATCTGCGAGCCTC 76 28 100.0 32 ............................ TCTTATTGGACTCACCGGAATTTCCGGACAGT 136 28 100.0 32 ............................ GGATTTTTTGAAGATGAAGCAGTGCGCGCAGC 196 28 100.0 32 ............................ TTATCGCCATATTGCCAATTAAAATCACCATT 256 28 100.0 32 ............................ ATGATCTTTGATGCGGTTCATTAAATCAATTT 316 28 100.0 32 ............................ TACTGACGCGCTAATGGGCCGAGCTGCACTTG 376 28 100.0 32 ............................ TATCAAGCAACACAAGATGCTATGAACGTAGC 436 28 100.0 32 ............................ TTCCGCTATTCTTCTGGCTTAAAAAACAAGCT 496 28 100.0 32 ............................ TTGGTTTTTGAATCACCTATTCGAATGTATTT 556 28 100.0 32 ............................ TCAGACATTCGCCGAAGCGCTACAGCTTGCAG 616 28 100.0 32 ............................ TTATCGCAGCAATACTCATCCTTGCGTGCTTC 676 28 100.0 32 ............................ TGACAGTGGTCGGTCGCACAGATCTGGTCAGC 736 28 100.0 32 ............................ TCAATCTGAGATCGAGAGAATTCGAGATCTTG 796 28 100.0 32 ............................ AGATTGTTTGTTACCCAATGCTCAAGCTTGGT 856 28 100.0 33 ............................ TATCAATCTGACTGAAGATCCGGCAGCTTACGT 917 28 100.0 32 ............................ GGTTACTTGCACGCTGCCATCAACAATCATGT 977 28 100.0 32 ............................ ATTTATTCACTGCTGAAAAGCCATCCTGCAAG 1037 28 100.0 32 ............................ GTATGTTCAACTGGGTAGGCAATACCCTAACA 1097 28 100.0 32 ............................ TGACTCAAACAAGCTGAAGGTTGACAGCCAGC 1157 28 100.0 32 ............................ ATGTATCATACATAAGGCCAAGGAACTCTAAG 1217 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 21 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : CTCTGTGTTTTGCTCG # Right flank : AGATCCCGTATTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [13.3-10.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 136738-141266 **** Predicted by CRISPRDetect 2.4 *** >NZ_GG774559.1 Vibrio cholerae RC385 supercont1.5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 136738 28 100.0 32 ............................ AATACGGGCATAGTCTTTATCGTTAGGGAACG 136798 28 100.0 32 ............................ GAGAGGTTGCACGAAAAAAGCTTGAGGTAATG 136858 28 100.0 32 ............................ GGGGAAGAGCAAGAACGCGCTCGAATCAAAAA 136918 28 100.0 32 ............................ TTTATATTGTCAATGTGAATTGTGCTTGTTTT 136978 28 100.0 32 ............................ TGTCACATCCGCAGTAAGCTCACCGCCAACCG 137038 28 100.0 32 ............................ TTATAAGTTTTGGGAGGCGGCAATGATGGTCG 137098 28 100.0 32 ............................ TGCAAACAGGGCAAATGTGGTTTGTTCGTGCC 137158 28 100.0 32 ............................ CATAGTCGAAACTCGCGCTCTGTGTTTTGCTC 137218 28 100.0 32 ............................ TTACCTTTTATCGAGAAGAATCTGCGAGCCTC 137278 28 100.0 32 ............................ TCTTATTGGACTCACCGGAATTTCCGGACAGT 137338 28 100.0 32 ............................ GGATTTTTTGAAGATGAAGCAGTGCGCGCAGC 137398 28 100.0 32 ............................ TTATCGCCATATTGCCAATTAAAATCACCATT 137458 28 100.0 32 ............................ ATGATCTTTGATGCGGTTCATTAAATCAATTT 137518 28 100.0 32 ............................ TACTGACGCGCTAATGGGCCGAGCTGCACTTG 137578 28 100.0 32 ............................ TATCAAGCAACACAAGATGCTATGAACGTAGC 137638 28 100.0 32 ............................ TTCCGCTATTCTTCTGGCTTAAAAAACAAGCT 137698 28 100.0 32 ............................ TTGGTTTTTGAATCACCTATTCGAATGTATTT 137758 28 100.0 32 ............................ TCAGACATTCGCCGAAGCGCTACAGCTTGCAG 137818 28 100.0 32 ............................ TTATCGCAGCAATACTCATCCTTGCGTGCTTC 137878 28 100.0 32 ............................ TGACAGTGGTCGGTCGCACAGATCTGGTCAGC 137938 28 100.0 32 ............................ TCAATCTGAGATCGAGAGAATTCGAGATCTTG 137998 28 100.0 32 ............................ AGATTGTTTGTTACCCAATGCTCAAGCTTGGT 138058 28 100.0 33 ............................ TATCAATCTGACTGAAGATCCGGCAGCTTACGT 138119 28 100.0 32 ............................ GGTTACTTGCACGCTGCCATCAACAATCATGT 138179 28 100.0 32 ............................ ATTTATTCACTGCTGAAAAGCCATCCTGCAAG 138239 28 100.0 32 ............................ GTATGTTCAACTGGGTAGGCAATACCCTAACA 138299 28 100.0 32 ............................ TGACTCAAACAAGCTGAAGGTTGACAGCCAGC 138359 28 100.0 32 ............................ ATGTATCATACATAAGGCCAAGGAACTCTAAG 138419 28 100.0 32 ............................ GATCCCGTATTGGATGGCGATGCCACTTGTGG 138479 28 100.0 32 ............................ TCCATCTGGCTTTTTTTATTTATCTATCTTTG 138539 28 100.0 32 ............................ TCTGTTCTTTCTGCCATTAGCTGTCCAAAGTT 138599 28 100.0 32 ............................ TAGTGATAATAGATAAATAAAGGCGCGATTGC 138659 28 100.0 32 ............................ GTTGATCCGCTGACCAGATCTGTGCGACCGAC 138719 28 100.0 32 ............................ AGTTGGAATTTGCAATAGCAGCCCCACCTAGA 138779 28 100.0 32 ............................ TGTTGAGTTGATTCAAGCTTTGCCAGCCAAGG 138839 28 100.0 32 ............................ TAAATTACTAATTGAAATGTCTAAGCAGATGC 138899 28 100.0 32 ............................ TATACGTTCATCTTGGTATTGTCTTTGCCGCT 138959 28 100.0 32 ............................ AAGTACTCGGACGCGCCAGCATGGAAAAACAA 139019 28 100.0 32 ............................ AATAATATCTGTAGTAGTCTCTGGTAATCTCT 139079 28 100.0 32 ............................ TTGTTAAGGAGGTAGCATGAAACCAACAATCA 139139 28 100.0 32 ............................ TTAAGCTGTGGATCGATGGCATTGAACGTGCC 139199 28 100.0 32 ............................ TCTGCCGTTCGGGAATAGGTAAACGCCTTTGT 139259 28 100.0 32 ............................ TAAAGCCTTATGTACTGGTGTGTTATCATCAC 139319 28 100.0 32 ............................ GTATATCTGCTGCTGCGGATCATACTGGGGAA 139379 28 100.0 32 ............................ AATATTTGGCATAAACGCGCGATGCAGAAAAT 139439 28 100.0 32 ............................ AGTAATCATCAAAATCGTTGTAAAACAGCTCA 139499 28 100.0 32 ............................ TTTAATCATGAGCGTTTTGAACCCTCTAAGCC 139559 28 100.0 32 ............................ TTTTCTGCCCGTTTCTAGCTTGGTAATTTCAT 139619 28 100.0 32 ............................ ATGATCAGCGTCAAACGCTCGCCTTTCGTCTT 139679 28 100.0 32 ............................ ATCAACTAGCCCCTTTCTATGATTGGTTGTCC 139739 28 100.0 32 ............................ TATCGAGCTGATTCAAGCTTTGCCAGCCAAGG 139799 28 100.0 32 ............................ TGTCAACCTGACTGAAGATCCGGCAGCTTACG 139859 28 100.0 32 ............................ TTGATCGTCAATCTTGGGACACACTTAACGAT 139919 28 100.0 32 ............................ AGCATTACACAGAAATCCACGTCAGTGCTTGG 139979 28 100.0 32 ............................ GTTGGTACTCATTCTGAGGTTGCAGCCACTGG 140039 28 100.0 32 ............................ TTTTGAGCTTTGGACAAGTAGAGATCATCCTT 140099 28 100.0 32 ............................ TATTTAACTGGATCTGGCATTGGCATTGGCAT 140159 28 100.0 32 ............................ TAATTGAAATGTCTAAGCAGATGCACGAAGAG 140219 28 100.0 32 ............................ AAATGTCTGCCGGAACTTCAAACCACTTGAGA 140279 28 100.0 32 ............................ TTTATCTGGAATTTCTTGTGGGGTGTACACTG 140339 28 100.0 32 ............................ TGAAGCACTGCGCCTTTCATAAATGTGAAAGC 140399 28 100.0 32 ............................ CAACAATGGCGCCATTGCCCATCTCGTAACTA 140459 28 100.0 32 ............................ ATATGATGTGTTTTATGGGTGCTTAGACAACA 140519 28 100.0 32 ............................ GATCTCAGCTTCCCATTCGGACTGAGTTTTAT 140579 28 100.0 32 ............................ ACATGCGTGTTTTACGCCTTTTTGATATAATT 140639 28 100.0 32 ............................ AGTTAACCCCGCTGATTCTGCACCTAAGTGAC 140699 28 100.0 32 ............................ TCTATGACTACAATAGCTGGATTGTTCGCCAA 140759 28 100.0 32 ............................ CCATCTGAGTAACAGAGGTAGCGGAATTGTTA 140819 28 100.0 32 ............................ ACTAATCACAAATCCAGCCCCATCCATAAATT 140879 28 100.0 32 ............................ ACACAAACAAGCCTCGCAAAAGCGGGGCTTTT 140939 28 96.4 32 ...........T................ GCTAAAATCACTAGGCTGGAACAGAAACAAAA 140999 28 96.4 32 ...........T................ TGACTGAGCCAGAGAGCAAAGAAGAAGTTTTG 141059 28 96.4 32 ...........T................ CGTAGGAACGCAGCAGATCAGAAAGTATATCC 141119 28 96.4 32 ...........T................ AAGGGTTTAGACTTGGTATCAGTGTATAAATC 141179 28 96.4 32 ...........T................ AGCTTAAACAGTACGTTTTTGCCTTTGACGTT 141239 28 92.9 0 .........................TT. | ========== ====== ====== ====== ============================ ================================= ================== 76 28 99.7 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GAGCGCACTGCATGATTTGCAGGGGTTAAATTGGTTAGGACCTTTGGCAGGATATTGCAAGATTACTACGGTTACTCATGTGCCAGACCAAGTGCAATATCGCATCATTTCAGTTAAACGCAGTAATTTAAGCAAAGCAAAATTAACGCGTTTAATTGCTAGAGGTAGCATAGATAAAGATGGTGAGAAACGTTACAAAGTAAAAATGCTTAGCCAAGGGTTTGATAATCCATACCTTGATCTGTCTAGCAGTTCAACAGGGCAGGTGTACCGAAAATTCTTTGAGTTTAGTGATATTCAAGCTGACCCAGTTGATGGTGAGTTTGATAGTTATGGTCTTAGCAAAACAGCTACAGTACCTTGGTTTTAACCCTTTATTTTTGCTCTTTAAAAATGTGCTTTTAAAACAAATGGTTGCAACGGGTTGTTTTTAACAAGGTAAAAAGATGATTTTTACCCTAACAGCTTGTTGCAGCTTATTTTTATCGGTTTATTCTATT # Right flank : AGAAAGTAAATCAAACGAGGCAGTTCACTTTCTAGATTACGTTAAGGTTCTTACGTTCTGCTATGCATGTTTATTAGGGTTTTCTTAAATGGTCTTTTCCCCAAGCATTAGTGACAAATTTCCGAGGTGTAATGATTAAGATAGCCCAGTTGATGAGTATCAGTTGAGGGGTAGTCACCATGAGCATCGTTGGTTGTGTTAATATCAAATCCAAGTATATCGATCGAACATGTCAGATGGTCTCGTAAGCCAAGTTTTACTCAGGGCGAGTTTTGCGTCAATAAAAATCCTTTTAAAATCATAACGTAATGAGCTATTGGATTACATCAGCTTCCATGTCTTAAGTGGAGGTTATATTCTAGATTATTTTCAATTGCCGAGTACCAGTCACAGATAGGCTACCTTTCGCGGCCTCTTCTATATGCCCGCTCCACCAGCACATCATTGGTTTTCTACGTTCGAGATAATCCGTGCGGTTATAGGCACTTCGAACTTGGTTA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //