Array 1 2388-38 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHPN01000043.1 Bifidobacterium longum subsp. longum strain MCC10003 contig0043, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 2387 36 100.0 28 .................................... TCCACGGTCTTTTTCCGACACCAGTTCA 2323 36 100.0 29 .................................... ATTGGTTCGACCAGCGTGAACGGTGCCGT 2258 36 100.0 28 .................................... TGGTGGCCAACGACACGATGCGCGAGTT 2194 36 100.0 28 .................................... CGGCAACAGCGCGTGTATTGCGTGTCAT 2130 36 100.0 29 .................................... CTACCCTTTATTCTCCCAAAACCTCGTTT 2065 36 100.0 28 .................................... CTGAACGACGACGCCGAGGAATACCGCA 2001 36 100.0 29 .................................... GAAATCCCTAATCAAAGATTAGGGCGCAC 1936 36 100.0 28 .................................... ATGTTCATCGACCTTATCGCTGGACTGT 1872 36 100.0 28 .................................... CTGAGATGCGCGCTGGAACACGCTCAGT 1808 36 100.0 28 .................................... AATGCGCTGAAATACGGGTTGGCCAACG 1744 36 100.0 29 .................................... GTGAGGGACACCTTCATCCGCATACTGCA 1679 36 100.0 29 .................................... GTGAGCTTGTCCGTGTCTTTCATCAGTGG 1614 36 100.0 28 .................................... TGTTTACGCTCAAAAAGCACATTAGATT 1550 36 100.0 28 .................................... CCGAGGCCGGTAGGGTTGCGTGTCTGGT 1486 36 100.0 28 .................................... GTTGTAATCGGTCATAATAGTTTTCAAT 1422 36 100.0 28 .................................... TCTCCCAGTTGCTGCCCCTTGGCGTCGA 1358 36 100.0 28 .................................... CGTATTCATCGTGGCCTCTTCGCGGTTT 1294 36 100.0 28 .................................... CGTACATGATGGGGTCCTTGACCTTGTA 1230 36 100.0 28 .................................... TTGGTGGTGTTGGGCGTCCGGCGCAGAA 1166 36 100.0 28 .................................... AGGTCGAGCGCCTCCTGCCATCCGGCCT 1102 36 100.0 28 .................................... ACAGTATTATTGTCCTGATATTCATGTC 1038 36 100.0 29 .................................... TCGTCGTCCATCTCTGTACCTCGGTTTCT 973 36 100.0 28 .................................... TCCATGACCGCGTCCATCACCTCATGCC 909 36 100.0 28 .................................... CGTTCCCCAGTGGGGTGAGTGTGATGCC 845 36 100.0 29 .................................... ACCGATTGCAACGCGAATATCCCGGGTAT 780 36 100.0 28 .................................... TCCTGCAACTCCTCCTTGCGGGCCTTCA 716 36 100.0 28 .................................... GTTGTTCCGGGAACAACTGGGAACAACT 652 36 100.0 28 .................................... CTTGCCTCCGTTCTGCATCCAGCTGTCG 588 36 100.0 29 .................................... GTCGCACGTGGCATGGCATGTTGGCGAAC 523 36 100.0 29 .................................... TGTTGAGGGGAACCGTATCAAACCTGATT 458 36 100.0 28 .................................... TGGTTTCCGTGCCGCATTGGTCGCAGTA 394 36 100.0 29 .................................... TCATGGGACTGTGAGCGGCGGCGGCGTGA 329 36 100.0 28 .................................... TAGAAGTGCAGATTCCGTTCCTGCAAAC 265 36 100.0 28 .................................... AGGACGTGCAACGCAAGTATTTCAAGAT 201 36 100.0 28 .................................... TCGTCGATGTGTTCCAAGAGGTTTGGTG 137 36 100.0 28 .................................... TATTGTTCGGGTGCGATGGTGATGATCA 73 36 88.9 0 ..............................TTG.A. | ========== ====== ====== ====== ==================================== ============================= ================== 37 36 99.7 28 CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Left flank : ATTCAACGGTTCCGGTTTGACTATACCGAGCTCATTGAATGATTTTGCGCAGCAATTTGGTTTATATTGCGAAGGCAAAATCGACAGGTTGCAGGTTCCCGAATATGTAGGCGAGTCATGAAACGCGATGAGGACAGTGGCGGCATGTGGTGCTTGGTGATGTTTGATTTGCCGGTCAAGACAAAACGGCAACGGCATGCTGCAACTGTCTTTAGAAATATGTTGCTCGACATGGGATATGGAATGGTGCAGTATTCCGTATATGTGCGGTATACGCCTACGCAATCGGGTAATAGGGCGACGGTCAAAATGATTAAAGACAATCTGCCAGCTAATGGCTTAGTTAGAATTTTGCATATTAGCGATCATCAGTGGTCCACGGCGGCCCGATTTTCTTCTGGAAAACGTGAGATTGAGGAAGAAACGCCTGACTTTCTCACGCTTTTTTGAACGTAGGAGAGTCTGAAAAGATTGAAAAATAGCCCTTCTTGATAGGCTAT # Right flank : CCCGATGTCTATTTAGAAGTGCAACACCCTTGTTGGTC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.30,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 1 89201-89545 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHPN01000047.1 Bifidobacterium longum subsp. longum strain MCC10003 contig0047, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ====================================================== ================== 89201 27 66.7 39 G..C....C.....C...GCC....GA ACCGCCACGGCGGTCATCACGATCGCCACGGTCATCGCG 89267 27 96.3 54 ........................A.. ATCGTCACGGGAGTCGCGAGCATCACGGTCATCGCGATCGTCGAAGTCACGGTC AGA [89273] 89351 27 81.5 33 GG.A..A.................A.. ATCATCGCGATCATCGCGATCGAAGTCACGGTC 89411 27 100.0 21 ........................... GTCGTAATCATCCTCGAAGTC Deletion [89459] 89459 27 100.0 30 ........................... GTCACGATCGTCGAAGTCACGGTCATCGCG 89516 27 81.5 0 C.............C.....C....CG | GC,C [89533,89537] ========== ====== ====== ====== =========================== ====================================================== ================== 6 27 87.7 36 ATCGGAGCGACGGCGACGCGGACGGTC # Left flank : CATACGGCATAAAGGCCGGGCTCTCACAAGGGCCCGGCCTTTGTTGTTGCCACAGTGATCAACGCCCATGAGTACCTTCGATGATCATCCGCCATTCTTGATGCATGGGAATAGTTGTCAACCGACAACTAAACGTACATGGCGGCAGCACGAGTGCCTTATTCAACATCGAAATATGCAGCGCGAAGAAGCCGAAAAACCAAAAAGGCTTCTATACCGAATGAAACGGTATAGAAGCCTTTTGGTTTGCGATCAAGCCCTTCTCACCCGAGAGAAGCTAGAGAACGATCAGTCCTCGAATGCCGAACCGTTAAGCGGGAAGCCCTACGGGCTTCCCGTAGGTGAGGGGCGCGGCTATGCCGCGACCGATCCGTGAGAGGGATTTAGTCCTCGAACGGATCAAAGTCGCGACGGACGCGGCGACGCGGGCGCTCAGTACGCTCTTCGCGGTCGGCGCGGTAGTCGTCGTAGTTGTCGTCGGTGGCGTAGCGCGGGTTACG # Right flank : GATCGTCACGGTCACCACGGCCACGGCCGCCACGGCGGTCATCGCGATCGCCACGGCTCGGGCGGGCGTTGTTCTCCTGATCCTCGAAACCAGGAATGGCCAGGGAGATCTTGCCGCGATCATCGACACCCTGAACGATCACCTCAACGGTGTCGCCTTCCTTGAGCACGTCTTCGACAGCGTCAATACGCTCGCCGTTGGCCAGGTTGCGGATCTGGGAGATGTGCAGCAGGCCGTCGGTGCCGGGGGTGAGGTTCACGAAAGCGCCGAACGACGTGGTCTTGACGACCTTGCCGTTGTAGGTTTCGCCGGCCTCGGGCACGTGCGGGTTGGCAATCTGGTCGATGATGGCCTTGGCCTTCTCAGCAGCCTCGCCACCCTCGGAGGAGATGAAGACGGTACCGTCATCCTCGATGGCAATTTCAGCGCCGGTGTCTTCCTGAATCTGGTTGATCATCTTGCCCTTCGGGCCGATGACTTCGCCAATCTTCTCAACCGGG # Questionable array : NO Score: 4.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.45, 5:0, 6:0.25, 7:-0.43, 8:0.6, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGGAGCGACGGCGACGCGGACGGTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,0] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGAACGACGGCGACGCGGACGATC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //