Array 1 2483-414 **** Predicted by CRISPRDetect 2.4 *** >NZ_ORYQ01000367.1 Xanthomonas fragariae strain ICMP 20574 isolate ICMP 20574, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2482 28 100.0 32 ............................ AGACGGTACAACTGCATACGCTAGAGGTATAG 2422 28 100.0 33 ............................ GTCATCGTGACAACCGAATACCGTGGTGTCTTC 2361 28 100.0 32 ............................ TTACGGTCATGTCCTGGATATGGTGTCCAGGA 2301 28 100.0 32 ............................ TTTCAGATCCCTCGCCTGGGTGGCCTACTCGT 2241 28 100.0 32 ............................ GTCCATGCGGCCGGCAGCCAACAGGCTGCGAA 2181 28 100.0 32 ............................ TATGTCGCTGAGGGGTGATCCATACCTAACCC 2121 28 100.0 32 ............................ CTGGCTGCAACCGCTACTCCGTAATAACTAGG 2061 28 100.0 32 ............................ ACCAGGTCCCGGCCCTTCTGGGAGTTCACTGC 2001 28 100.0 32 ............................ AATGAGCAATAACTTTTGCGCTAGTGTTCATC 1941 28 100.0 32 ............................ ACATTATCTTTTCCGCGAATCAAAAGCTTAAT 1881 28 100.0 32 ............................ TTCCGGGGCAATCCCTTTACGCCTTCTTGGCC 1821 28 100.0 32 ............................ ACCAAACGAACTGGTCCAGGCTAGGATCCGTT 1761 28 100.0 32 ............................ TTCTGGGACCACACAACCTCGCCTGCGTGCAC 1701 28 100.0 32 ............................ GTTCAGGGCAGGCGAAAGGTCTCAGCGCTGCA 1641 28 100.0 32 ............................ GCATCGACCCAATGGCCGCCCTTGCCAGGCTC 1581 28 100.0 32 ............................ AAACATGCGGGGATCAGCACGGCCATCGGTTC 1521 28 100.0 32 ............................ CGTAGCCGGGAACTCAGCCAACTGTGCTTGCA 1461 28 100.0 32 ............................ GATTTCACTGATTGATCTGGACACTGTGCAGC 1401 28 100.0 32 ............................ TCGAAGTAGGCATAAAGCACGTTGGGCAGCCG 1341 28 100.0 32 ............................ CAGACAAGCCAGACGCCGACCCACTGATAGTC 1281 28 100.0 32 ............................ CGTCGTTTCGCGTCGTCCACCGCAGCCAAGGT 1221 28 100.0 32 ............................ ACCAACGACGGGTGTCGCGCGCACCTGGGTAG 1161 28 100.0 32 ............................ ACCTACGAGCCCCAGCCGTATGCAGAGGTTTC 1101 28 100.0 32 ............................ CATTAGGCTGCACAGTGTCCAGATCAATCAGT 1041 28 100.0 32 ............................ AGCCGCACCCTTGCAGACTGTACTCTCTGCAT 981 28 100.0 32 ............................ TCCACGTCCTCTTGAACAACATGTTCAGGGAG 921 28 100.0 32 ............................ TGCAGCAGGGGGAGGAACTTCCGTATCAAGAC 861 28 100.0 32 ............................ TGTAGGAGCAGACGGGGACAATACGCAAGCAG 801 28 100.0 32 ............................ TTTGCGCCACACCGAAACCGAATTCCGCGACA 741 28 100.0 32 ............................ TAAGCAGCGCGTTAAGAATACATTCGTGACCT 681 28 100.0 32 ............................ TAGATGCCCTGATTGCAGAAGTCAGGACCTCT 621 28 100.0 32 ............................ TCTATGGGGAAATCATTTTCGAAAAGTACATC 561 28 100.0 32 ............................ TCCCAGGGCAGTCGGTGTCGCACCTTGCTTCG 501 28 100.0 32 ............................ TTAAACCAAAACTCATGCCAGTCGTAGCGACT 441 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 35 28 100.0 32 GTTCACTGCCGCGTAGGCAGCTCAGAAA # Left flank : TTGCAGATGTTGATGGCGAGACCCTGGCTGCACGGGATGCTCGATCACCTGGCGGTATCGGCCATTCTCGCTGCCCCTGCCGACACCCAACATCGGCACGTCACCAGGGTGCAGGCCAAGAGCAGTCCCTCGCGCCTGCGCCGTCGTGCCATGCGCCGTCATGGGATCGATGCAGAGACAGCCGCCCAACGCATCCCGGATGCGGCAGCCGAACAGCTGCCACTGCCGTTCGTCGTACTGGGCAGCCGCAGCACGGGACAGGCGTCATTCCCGCTGTTCATCCGTCACGGCCCCCTGCTATCGGAGCCGACGAACGGCAGCTTCAACAGCTATGGCCTGAGCCAGGAAGCGACCGTGCCCTGGTTTTGACCCTTTTTCCCGGACAGAACAAAGGCTGCTTTAGAATCAACCACTTGGCAGGCACCTTGTTTCAAAGGGTGCCTGCCCTGTTTTGTCGGTATTTCTTTTATTTATCAATGGATTGATGAAGATCTGATCTT # Right flank : AAATTCAAGGATGGCCATACGGGTTGGATTGACGTTTGATACGCCCAGGGTTCCGTAGACCCTCAAGACCCTCGTTGCGCGTAGCGCCGTTCAAACTCTACAGGGGACAGGTCGCCAGTTGAACCGTGGCGGCGGTTGGGGTTGTAGAACATCTCGATGTAGTCGAATACCTCGGCGCGAGCGGCGTCCTTGGTGGAATAGGTCCGCCGCCTGATCCGCTCGCGTTTGAGCAGGCCGAAGAAGCTCTCCACGGGTGCGTTGTCGTGGCAGTTGCCACGCCGACTCATGCTGCACACCACGCCATGGGACGCCAGGAAACTGCGCCAGTCATCGCTGGTGTAGACAGACCCTTGGTCCGAATGAACCAAGCAACCAGCGTTGGGTTTGCGCCGCCACACCGCAGACAACAAGGCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //