Array 1 218863-216904 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGEQE010000002.1 Salmonella sp. 32020501-2019-00041 NODE_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 218862 29 100.0 32 ............................. GCGGAATACCACTATATAAAGCCCCTCAACCC 218801 29 100.0 32 ............................. ATTTTTACAAAAACTGGCCCCCTGAATTCATC 218740 29 100.0 32 ............................. TTGATTTTAATGGCGGGCGAATTGTATTTAAC 218679 29 100.0 33 ............................. TTTCCTGTAACATTCCGATATATAATTCTCCGC 218617 29 100.0 32 ............................. GCCCAATTGCCGGCGACGGTTTCCATGTCAGC 218556 29 100.0 32 ............................. TGGCGAAACAGGCCAGAGAACGCGAATTGCAG 218495 29 100.0 32 ............................. CGTGTTCGATGTAGGTTTCTTCCTGAAGGCGA 218434 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAA 218373 29 100.0 32 ............................. TTGGCATGGCTGGCGACGTAGCGAACAAAATC 218312 29 100.0 32 ............................. CATAAATTACTCGATGCGTACCTGTGAAATCT 218251 29 100.0 32 ............................. ATACAGTAGCAAAATAAAAAGGCCGCGTGAGC 218190 29 100.0 32 ............................. CAATGCCGTTTTGCCCGAGTTTTCACCGCCGT 218129 29 100.0 32 ............................. CTCTATTGCCGGGGGTCGAGATGGCCGCCTGC 218068 29 100.0 32 ............................. GTGATCCGCGCCTATGACGCAATGGTAACGAC 218007 29 96.6 32 ............................T GTAGCGCAGGGACTGGCAACGGTGCCGGGCGT 217946 29 100.0 32 ............................. CAGGAGACGGCCAGCCGCACCGGTGGCGGTGC 217885 29 100.0 32 ............................. GGCGTTTTATTCGACCTGAAAAAATGGATCGT 217824 29 96.6 32 .............T............... ACATCTCGCGGACAATAGCGATTTCCACCGTC 217763 29 96.6 32 .............T............... CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 217702 29 93.1 29 .............T..............C CTTGTTAAATACAGGCGGCGGCGGGGTTG 217644 29 96.6 32 .............T............... AACGGCGACGGGATCGTTTTTTGTGGCGAAAA 217583 29 96.6 32 .............T............... CAGGATTGGATTAATGAAGACGGGTACGAAAT 217522 29 96.6 32 .............T............... AGATTGCAGAATTATATTTCACGCTGGCAGCA 217461 29 96.6 32 .............T............... CTGTTGTTATGCGTTGGATCGTAATAGTTAAC 217400 29 96.6 32 .............T............... CTTGGCAGGGCTGCGCCGCAATGGCAGCAACA 217339 29 96.6 32 .............T............... GTCTTATAAATTGGGCTGATAGTGCCGCTGAT 217278 29 100.0 32 ............................. TACCTGCCGGGACTGGAGTGCAGGTAACCCCA 217217 29 100.0 11 ............................. CGGCCAGCCAT Deletion [217178] 217177 29 72.4 32 T.AAA.AG...TG................ ACAGGGTATATGAGCTTATACGTCATGAACCA 217116 29 100.0 32 ............................. GGCGATGCGGGCGCATTGTACGCGATGCAGAC 217055 29 100.0 32 ............................. TCGTTGGTGGCGTTCGTCACCTGGCTGTCGGT 216994 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 216933 29 93.1 0 A...........T................ | A [216906] ========== ====== ====== ====== ============================= ================================= ================== 33 29 97.8 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACATCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGTAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 236761-235145 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGEQE010000002.1 Salmonella sp. 32020501-2019-00041 NODE_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 236760 29 100.0 33 ............................. TCGTACACCAGCGCTTTACCGGAGTGTCCGTGC 236698 29 100.0 32 ............................. ATCAAATATCAGATAACCCCCGTCGGCAAACC 236637 29 100.0 32 ............................. ATCACATTCCTGAAAAATGACTCCCTTAGCGA 236576 29 100.0 32 ............................. GAAGATATTGAAAGCGCCCAATCTTCCCAGCT 236515 29 100.0 32 ............................. TCCAGCATTGACGCGAACCCTGCGCCGCTGGC 236454 29 100.0 32 ............................. GCTGAAATATTGCTATTTCCGAAGGGGCTGAT 236393 29 100.0 32 ............................. TCCCGCCTGAACAAAATCGACCACGTTATTAA 236332 29 100.0 32 ............................. GCTCCCGCGGGCGCTCCTGTTGGCCAGCATCA 236271 29 100.0 32 ............................. CGTCCAATACGAGCTGAGTGCGCACGCCCTTA 236210 29 100.0 32 ............................. CAGATCGACCGCCTGGAGGTTGAGGTGGTTGG 236149 29 100.0 32 ............................. GCGTGGATTGATTCTGATCGCCGTGGGCGGGC 236088 29 100.0 32 ............................. GAAACAGAGATCGCGTCCGATAATGCCGACAT 236027 29 100.0 32 ............................. AGAATATTCAACTCCAGCGGGAAAAAGACGCA 235966 29 100.0 32 ............................. AACTTTCATCAAACTGGATCGAAGGGCCACTT 235905 29 100.0 32 ............................. CCGGTTTTAGCTCGCTGGAAACCTCGCTTTTG 235844 29 100.0 32 ............................. ACGCCGAGGGTGAATATTTAGACCGGGACGCA 235783 29 100.0 32 ............................. GGATCATCAATGTGGGAAGTTATCACAACGGA 235722 29 100.0 33 ............................. CGAAATTCAGCGTCTGGAATGCAAGGATTTTGT 235660 29 100.0 32 ............................. GCTATATCCCCGAATCGTGCGCTACGTGAAAA 235599 29 100.0 32 ............................. ACGAGGTCATTTTCAGCACTCGTCAGGCGCTG 235538 29 100.0 32 ............................. ATGCCCTGTTCGGCAAAATCCCGCCACGCTGG 235477 29 100.0 32 ............................. TAAAACCGGTGCTGGATTTTGATGAAGACGAA 235416 29 100.0 32 ............................. CCATTCAACATCGCACTTAAGAACTTGTGCCA 235355 29 100.0 32 ............................. CGATATTTATCCAGACTGTCGGACAGGGTGGT 235294 29 100.0 32 ............................. CCTCATCGGGAGCCAACGCCGCGAGAATACGC 235233 29 96.6 32 ............................C AGCACAATCATTATTAGATGAACTTTCATCAA 235172 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAACAGTTTATAAACAACAATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGTCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATATGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGATATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //