Array 1 101105-101268 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV816336.1 Corynebacterium sp. HMSC059E07 Scaffold257, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================ ================== 101105 36 97.2 28 ..................A................. AACCCTTCTGTCTGCCGTACAATTGCCC 101169 36 100.0 28 .................................... AGACGACCAATTGCTATCACCAGCAATA 101233 36 88.9 0 ................................NNNN | ========== ====== ====== ====== ==================================== ============================ ================== 3 36 95.4 28 GCTGGGGTTCAGTTCTCATTACCCCTGATAGACTTC # Left flank : TGGCTACGAACTTGATCTCGGAGCGGGAGTAGCGGTCCTGGCGCGCACCCGCGCGCTCGGCCAATCCCTGGTAGATGCGGCGCTTGCGCAGCAGTCCATCACGCAGTGCCAGCGCTTCCATCAGCGAGATCTCTTCGTCGAACGCGGTGGCCGTGTTCGTGGCATTGATGGCGATGACAAGCTCGTCGATGCGCTTGGTCACGCCCTCGAGCTCACGGAGGAGATCCGTCGGGTTCTCATCCGGTTCATCGCCTTCCTGAATGCGGACCGTCGCCGCAAGCCGGTCACTCAGCGAGTTGAGGCGCTCCTGCGCCTGAGCGCGCTCGGCCAAGGCTTCAGCAAGTAGCATGATTCCTCCTTAAGAAGTTAGAAGAATTAAGCTAGGGCTACGGCGCTTCGCTGTCAATAGATGATGAGATCAATTTCAGAGTCTTTGCGACAATTCGACTTTCCGCGTCCCTGGAAATCCTTCACTAAGCTATTGATAGCAGTGTAGTGAG # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGTTCAGTTCTCATTACCCCTGATAGACTTCCCACGGCCAGGACGGTCTCCCAAATGAAGCTGGGGTTCAGTTCTCATTACCCCTGATAGACTTCCGCCAGGCGAGTTGTACCAGGCCAACAAGCTGGGGTTCAGTTCTCATTACCCCTGATAGACTTCTCCCACAGGGCACCACCGTCACCGTTGAGCTGGGGTTCAGTTCTCATTACCCCTGATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGTTCAGTTCTCATTACCCCTGATAGACTTCTCAAGCCGATCCTTCACACGACACGACTGCTGGGGTTCAGTTCTCATTACCCC # Questionable array : NO Score: 5.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGGGGTTCAGTTCTCATTACCCCTGATAGACTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: F [matched GCTGGGGTTCAGTTCTCAAAAACCCTGATAGACTTC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.20,-2.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 2 101365-101582 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV816336.1 Corynebacterium sp. HMSC059E07 Scaffold257, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ====================================== ================== 101365 26 100.0 38 .......................... GACTTCCCACGGCCAGGACGGTCTCCCAAATGAAGCTG 101429 26 100.0 38 .......................... GACTTCCGCCAGGCGAGTTGTACCAGGCCAACAAGCTG 101493 26 100.0 38 .......................... GACTTCTCCCACAGGGCACCACCGTCACCGTTGAGCTG 101557 26 100.0 0 .......................... | ========== ====== ====== ====== ========================== ====================================== ================== 4 26 100.0 38 GGGTTCAGTTCTCATTACCCCTGATA # Left flank : ATGCGGACCGTCGCCGCAAGCCGGTCACTCAGCGAGTTGAGGCGCTCCTGCGCCTGAGCGCGCTCGGCCAAGGCTTCAGCAAGTAGCATGATTCCTCCTTAAGAAGTTAGAAGAATTAAGCTAGGGCTACGGCGCTTCGCTGTCAATAGATGATGAGATCAATTTCAGAGTCTTTGCGACAATTCGACTTTCCGCGTCCCTGGAAATCCTTCACTAAGCTATTGATAGCAGTGTAGTGAGGCTGGGGTTCAGTTCTCAATACCCCTGATAGACTTCAACCCTTCTGTCTGCCGTACAATTGCCCGCTGGGGTTCAGTTCTCATTACCCCTGATAGACTTCAGACGACCAATTGCTATCACCAGCAATAGCTGGGGTTCAGTTCTCATTACCCCTGATAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGTTCAGTTCTCATTACCCCTGATAGACTTCTCAAGCCGATCCTTCACACGACACGACTGCTGGGGTTCAGTTCTCATTACCCCTGATAGACTTCACGGCATCAAGTCCATGTTTGGCCAGGTGCTGGGGTTCAGTTCTCATTACCCCTGATAGACTTCACGACTGGATGGAGGGCCTCATCGAAGAGCTGGGGTTCAGTTCTCATTACCCCTGATAGACTTCCTGGCATTAACTCTCAGCAGATCCCACGGCTGGGGTTCAGTTCTCATTACCCCTGATAGACTTCGGAAGGAAAGCGCACGCTACCGCACCGAGCTGGGGTTCAGTTCTCATTACCCCTGATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGGTTCAGTTCTCATTACCCCTGATA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.85%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 3 101743-101970 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV816336.1 Corynebacterium sp. HMSC059E07 Scaffold257, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================ ================== 101743 36 100.0 28 .................................... ACGGCATCAAGTCCATGTTTGGCCAGGT 101807 36 100.0 28 .................................... ACGACTGGATGGAGGGCCTCATCGAAGA 101871 36 100.0 28 .................................... CTGGCATTAACTCTCAGCAGATCCCACG 101935 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================ ================== 4 36 100.0 28 GCTGGGGTTCAGTTCTCATTACCCCTGATAGACTTC # Left flank : AGTTCTCATTACCCCTGATAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGTTCAGTTCTCATTACCCCTGATAGACTTCCCACGGCCAGGACGGTCTCCCAAATGAAGCTGGGGTTCAGTTCTCATTACCCCTGATAGACTTCCGCCAGGCGAGTTGTACCAGGCCAACAAGCTGGGGTTCAGTTCTCATTACCCCTGATAGACTTCTCCCACAGGGCACCACCGTCACCGTTGAGCTGGGGTTCAGTTCTCATTACCCCTGATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGTTCAGTTCTCATTACCCCTGATAGACTTCTCAAGCCGATCCTTCACACGACACGACT # Right flank : CGGAAGGAAAGCGCACGCTACCGCACCGAGCTGGGGTTCAGTTCTCATTACCCCTGATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGTTCAGTTCTCATTACCCCTGATAGACTTCCCTACGGAATCGACCACCTCAAGCACTAGCTGGGGTTCAGTTCTCATTACCCCTGATAGACTTCCCGCTGTGAAACACCCAAAGGTGATTGGGCTGGGGTTCAGTTCTCATTACCCCTGATAGACTTCAGTGTGGCCCCAAAAGGGTCGTTTAACTGGAGTTTATCGGTGATCCTCCGCTAGAAAATCGTGAGCTGAGGTGGGGTATTCTCCATTTCGGAAGGCTCTGATTTGGAAAAGCGAATCGCTTTCGACCATTGAATATCAGTGACGGATATGATTCTCACATCTCCGCCTTCTGGTAGACCAG # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGGGGTTCAGTTCTCATTACCCCTGATAGACTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,12] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCTGGGGTTCAGTTCTCAAAAACCCTGATAGACTTC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.20,-2.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.74 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 4 102125-102288 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV816336.1 Corynebacterium sp. HMSC059E07 Scaffold257, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================ ================== 102125 36 88.9 28 NNNN................................ CCTACGGAATCGACCACCTCAAGCACTA 102189 36 100.0 28 .................................... CCGCTGTGAAACACCCAAAGGTGATTGG 102253 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================ ================== 3 36 96.3 28 GCTGGGGTTCAGTTCTCATTACCCCTGATAGACTTC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGTTCAGTTCTCATTACCCCTGATAGACTTCTCAAGCCGATCCTTCACACGACACGACTGCTGGGGTTCAGTTCTCATTACCCCTGATAGACTTCACGGCATCAAGTCCATGTTTGGCCAGGTGCTGGGGTTCAGTTCTCATTACCCCTGATAGACTTCACGACTGGATGGAGGGCCTCATCGAAGAGCTGGGGTTCAGTTCTCATTACCCCTGATAGACTTCCTGGCATTAACTCTCAGCAGATCCCACGGCTGGGGTTCAGTTCTCATTACCCCTGATAGACTTCGGAAGGAAAGCGCACGCTACCGCACCGAGCTGGGGTTCAGTTCTCATTACCCCTGATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : CAGTGTGGCCCCAAAAGGGTCGTTTAACTGGAGTTTATCGGTGATCCTCCGCTAGAAAATCGTGAGCTGAGGTGGGGTATTCTCCATTTCGGAAGGCTCTGATTTGGAAAAGCGAATCGCTTTCGACCATTGAATATCAGTGACGGATATGATTCTCACATCTCCGCCTTCTGGTAGACCAGACTTGATTTGCTTGACGGTTGTTGCGATACGGGAGGCGAGGGGGAAATACTGAACGTAAACGCTTAGTTGGGATCTACAAAAGCCAAGGTCTAAGAGGTGGTTTCGAAACCTGTTAGCCTCTCTGGTTTGAATTCTTGATTTAACGGGAAGATCGAACATGACCACGCACCACATTGGTTCACTATCTTTCGCCGGCATCGAGTTTTCCTTCCCAGACGGGAACGCTTAGGTGTTTTAGATTTCCCTCGATATATAGGCCATATTGTTGGCTGAACTCATTAAAAGCTGTGCTTAAGGATTTTCCACTGGAATTGAAG # Questionable array : NO Score: 5.48 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGGGGTTCAGTTCTCATTACCCCTGATAGACTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,12] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCTGGGGTTCAGTTCTCAAAAACCCTGATAGACTTC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.20,-2.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.42 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], //