Array 1 192409-194294 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDKG01000015.1 Pseudomonas aeruginosa strain Pae_CF67.02d CF67.02d_contig_15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 192409 28 96.4 32 .............C.............. TCCCTTAGCGCCTGAGCCTCGGCTTCGAGCTT 192469 28 96.4 32 .............C.............. ACGATGATCTATCAGACCTATCGTGGCTACGC 192529 28 96.4 32 .............C.............. AGGTTGACCAGCATGGCCGGCATCGACAGCGT 192589 28 96.4 33 .............C.............. ATGCAGCCAGGGCTTACTCCGCTGCTGCTGGAC 192650 28 96.4 32 .............C.............. TTGAGCTTGTCGTTGTACTCGTCGAGGCTCAT 192710 28 100.0 32 ............................ ACGTCGGAACGCAACTACCTGACCGCGTTGGT 192770 28 100.0 32 ............................ CGCAACGTTCGTGATCTGCCGTTCGCCGCCCA 192830 28 100.0 32 ............................ TCGGCGAGGCGATCGATCATGCGAATCAGCAA 192890 28 100.0 32 ............................ AGAAAGCCAAGATCTACCGCTGGAGAAAGGCG 192950 28 100.0 32 ............................ GAAGAACATCGCTGCGGCGATCTGGGCCTCGC 193010 28 100.0 32 ............................ AGGGGTTCGTCCCTGGCCGAGGTGGCCCGCTC 193070 28 100.0 32 ............................ AGGAAACCAGAGCAGGAGGATGGACTATGACC 193130 28 100.0 32 ............................ GAGAACGATTCCGTCTTGTTGGAGCTTTCTGT 193190 28 100.0 32 ............................ CGACGAGCAACTGCGCTTGCGCGTGCGTAACC 193250 28 100.0 32 ............................ GGAAGGCTGGCGCTCGAACGGATGTGTACAGG 193310 28 100.0 32 ............................ TCCGGATCACCAGGGCGACAGATGGCCACCTC 193370 28 100.0 33 ............................ CTCTGGCGGTAACCTTCCATGATCTGCGCAGCC 193431 28 100.0 32 ............................ TGCATGCACATCGGCGAACTGCTGACGTGCTT 193491 28 100.0 32 ............................ TGGCGCCGCCCGATTTCACGTAGCTGCTCGAT 193551 28 100.0 32 ............................ TGATATCCAGCTGCTCCAGGAACCGCTGGCGG 193611 28 100.0 32 ............................ TGATTTCGAAGGCCGCGGGCGACTGATCCGGA 193671 28 100.0 32 ............................ TGTCCGGTCCCGGAAAAGACCAACGCGGGAGT 193731 28 100.0 32 ............................ TCTACGAGCAGACCGAGTTGAAAGGACAGGAG 193791 28 100.0 28 ............................ GAGTGTGAGGCCGGGCAAACGGATTTGT 193847 28 100.0 32 ............................ TTGACGGCCAATGCCGGCTTCGACTTAGCTCG 193907 28 100.0 32 ............................ TCTGTCACCTCCTGGGAGGCGGCCTCGGCCTG 193967 28 100.0 32 ............................ AGCCACTCGCGGGCCAGCTCGGGCGATAGCAC 194027 28 100.0 32 ............................ GTGTCGCCCAGCACCGTTCAGCGCTACTTCAT 194087 28 100.0 32 ............................ AGCAATGGAAAGCAGCGATGTGACCCGACCCG 194147 28 100.0 32 ............................ TGCAGGTCATAGGCGTATTCGAAGGACAGGCT 194207 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 194267 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 32 28 98.5 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACACACTTGTTCGACAACGCGAAAGTGCGCTTGAGATCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCACTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTTGCATCGCCCATCACAAGACCTTTCGCGCTCGAACGGCGAGGCTCACCGCCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATAAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 204518-203169 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDKG01000015.1 Pseudomonas aeruginosa strain Pae_CF67.02d CF67.02d_contig_15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 204517 28 100.0 32 ............................ CAAAGCTCTGGTGTGGTTTGCTCGCACTCAAC 204457 28 100.0 32 ............................ GTCTCGCGCACATGCGGAAACCAGCCGGCACG 204397 28 100.0 32 ............................ GATTCGGGGAACTCAAGCCGCTTGCTTTGCAT 204337 28 100.0 32 ............................ TGCTGGCGCTGATCAGTTGGAAAGGGCTTGCT 204277 28 100.0 32 ............................ TTCGAGGCCGACATGCTCGACCGCAGCAAGGT 204217 28 100.0 32 ............................ AATGGCAGCAGCGCGAAAAGCTCGCGGAGTTC 204157 28 100.0 32 ............................ TCGCCGATCAGCAAGATGGAGGCTTGGCTGGA 204097 28 100.0 32 ............................ CAGACCGGCATCGAGGCGCGTCGCGGCCATCG 204037 28 100.0 32 ............................ TGGAAGAACGCACTTGGACGGTCAGCATTGGC 203977 28 100.0 32 ............................ ACTCTGCGCCAGAGGTCAGCACCAGAAGATCA 203917 28 100.0 32 ............................ TATAACGATATTGATGCCGGATTTAGGCCAAG 203857 28 100.0 32 ............................ AGGTAGACGTCCTCGCCCACACCGATGTCGCG 203797 28 100.0 32 ............................ GTCCAGGCACGTTTGCTCGCGCTTTGATCTCA 203737 28 100.0 32 ............................ GAAAAGAGTTGACTGCACAGTGGGCATCACCT 203677 28 100.0 32 ............................ AATTGCAGGTGACCGACAGGCTTGCGGTACCA 203617 28 100.0 32 ............................ TTCTGCGCAAGTTGTTCCTCGGACATCCCCGG 203557 28 100.0 32 ............................ AGCTCGGTCGCCCCGGGGCGGCCGGCGTAGTA 203497 28 100.0 32 ............................ AGGTCGGGGATGGATCGAACCACCCGCGCGAC 203437 28 100.0 32 ............................ GTGCCCGGGGCCGACTCCGAACCCGACGAGCA 203377 28 100.0 32 ............................ TTGTCGCTGATATCGAAGGTGTCCCACTTCCG 203317 28 100.0 32 ............................ AGTAGCCGTCGGCGTTGTGACAAAGCCATTCC 203257 28 100.0 33 ............................ GCACGGTAGGTGCCGGCGCCCACGCCGGAGGCT 203196 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 23 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTGGCATCGCCCATCACAGGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCTACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //