Array 1 201879-202762 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADKOO010000014.1 Cronobacter malonaticus strain MOD1_GK1354 cmalGK1354_contig_10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 201879 29 100.0 32 ............................. ATTACCAGGGGGGATATTGGGAGTATCTTCAG 201940 29 100.0 32 ............................. CCGATACCGGCGATTAATCGGGGGACGGTGTA 202001 29 100.0 32 ............................. CAGATATCATGCTGGCAGATTTCAGCGGGAAA 202062 29 100.0 32 ............................. TGTCGCTAACATAGTTTCTCCTGAGCGTGACA 202123 29 100.0 32 ............................. GCTGCGCAAATACGAGGCAATCGTATTAATTA 202184 29 100.0 32 ............................. CTCGAGGCGGATTTTGTGCCGCTACAGCTCAC 202245 29 100.0 32 ............................. GTAAAGGACCCGAGCGCCCGGAAATTGAGTTA 202306 29 100.0 32 ............................. ATGGCGCTCTCTACAATCTGGAGGCGATAAAC 202367 29 100.0 32 ............................. TGGATATCACCCGGCAATGGCCGGGGAACAGC 202428 29 100.0 32 ............................. CGCCCCTCTCGGGGCGCGCTCCTGTTAGTCTT 202489 29 100.0 32 ............................. CTTCGGCAACCGGATCGGCTTTGCCTCCATAT 202550 29 100.0 32 ............................. ATGGTCGCGCAAAGCGCCATGCGGCCTACACC 202611 29 100.0 32 ............................. CGGATTGCATCAGATAACCGACTCCATGAATC 202672 29 100.0 32 ............................. CGGATTGCATCAGATAACCGACTCCATGAATC 202733 29 93.1 0 ...........TT................ | G [202750] ========== ====== ====== ====== ============================= ================================ ================== 15 29 99.5 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACGAAAGCTTCAAATGGATGATGGCGAACAACATCGCGTTTATCGTCGCCAACATCAATATCAACTACCGGCGGCCCGCCGTGCTTGGCGATCTGCTGACTGTCACCAGCCATGTCAAACAGCTTAACGGTAAAAGCGGAGTGTTAAGCCAGGTCATTACGCTGGAGCCGGAAGGCGAGGTGGTCGCCGATGCGCTTATCACTTTTGTGTGTATCGATCTGAAAACACAAAAAGCCTTACCGATTGAAGGCGAACTGCGCGAAAAGCTGGAAAAAATCACAGGGTAAATTCTGCAAAAGTGGCGCTTGTGCCGACAATCATGGACTTATCACCGCTCAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACACCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTAAGAAAATGTTGGTAGGATGTGGGTGGCGAAAAAATCGCAATAAGTACAAGTGCTTAACGTTAGT # Right flank : GCCCAGGTTCTTCACGCCTGTCAATCGCCTCCCCTTTTCCCGCCACATTCTTCAGCAACGTTTATACTTCAAAGCCCTTGTTAAATTTTGAACACTGCGCAACGAAGGAGAGGTTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGCTGCAGGCGCATCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGGCTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGATATGCGCCACCCTGGCCGCCGTTTACCGCTCTTTTTCCGGGCGCTGAACAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATCAAGGCGCTCGGCTTTAAGCCGGAGGATGTACGGCACATTGTGCTGACGCATCTGGATTTCGATCACGCGGGCGGGCTGAGCGATTTCCCGCAGGCGCAGGTGCATCTGATGCAGCGGGAAATGACCGCCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 229535-231274 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADKOO010000014.1 Cronobacter malonaticus strain MOD1_GK1354 cmalGK1354_contig_10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 229535 29 100.0 32 ............................. TTCGGGCCAATTCTAAAAGGCGTTCCCTTTGT 229596 29 100.0 32 ............................. CCTGCCGCGCAGCACCGACAGCGCCGGTACAC 229657 29 100.0 32 ............................. CATTACCGTATTGACGGCGACGCATTAATCGC 229718 29 100.0 32 ............................. GACTCGCCCACCCATTTGGCCACCGCAACCAG 229779 29 100.0 32 ............................. TTGGCAAGATGTCGCTGAGTGAATCCTCGGTC 229840 29 100.0 32 ............................. CCCGAGACCGAGGCGCGGCTAAAAACGCTCGT 229901 29 100.0 32 ............................. GCTTTCGACGGACTTCCAAGAACCGAGCGAAG 229962 29 100.0 32 ............................. TGGTGACGGTTGACGCCTACGGAATCGAGAGT 230023 29 100.0 32 ............................. CACGAGGACGAATACGTCTGCTACGTGTACGT 230084 29 96.6 32 ..A.......................... GCCGATATCTCTGATTGTTACTCGTCGCTGAA 230145 29 100.0 32 ............................. TCCGTCCTGTGTGTGGGCGTTGACACTGGCGG 230206 29 100.0 32 ............................. AATCTCCTTAAGCGCGGCCATGTACATCAGGT 230267 29 100.0 32 ............................. GGCGGGCCTTGAATTGTGGGAGAAAAAAATCA 230328 29 100.0 32 ............................. TCCAGGACATGAAAGCTGACGCGCAGAAAAAA 230389 29 100.0 32 ............................. CTGATAGCTACGGCGAGGGGGAAACGTGTTAC 230450 29 93.1 32 ..........T.T................ CACCGCATCGACACGCCGACTGCGCAAAAAGA 230511 29 93.1 32 ............T.....A.......... GACGAATTATGGAACGTAAGTTTCTCGACTGG 230572 29 96.6 32 ............T................ AGGATATCGCTGATGCAGCGGCATATGAAGAA 230633 29 96.6 32 .G........................... CGCCGTGGATAAGAGCAGAGAGCAGTTTTTAG 230694 29 100.0 32 ............................. GGTAACTATACCTACGGCGACTTAAGGCATGT 230755 29 100.0 33 ............................. CCACCCTTTCATCCATAACCACCCCATCAACGC 230817 29 100.0 33 ............................. CCACCCTTTCATCCATAACCACCCCATCAACGC 230879 29 100.0 32 ............................. CCGCTGACGAATACGCCGTTATTTATGTAACC C [230884] 230941 29 100.0 32 ............................. GGTCATTGCCGTTCGCGCAGGTGAGGCCGTCT 231002 29 100.0 32 ............................. TGTCCCCGTTATCCAGAGCGGACTGCAGTCCG 231063 29 96.6 32 ............T................ ACTACACCCGAATCTACCCGAAATGACGCCGA 231124 29 100.0 32 ............................. GGGAAATAACCCTTATTGTCTGTTCGCCCTCT 231185 29 89.7 32 ...........AT....C........... TACTCTACGTAGTGCGAGAACGGCTCGCCTGC 231246 29 89.7 0 ............T............G..A | ========== ====== ====== ====== ============================= ================================= ================== 29 29 98.3 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACCGTGCTCGCCGCCGGTGAAATCGAACCGCCGCAGCCCGCAACCGACATGCTGCCGCCCGCGATACCGCAAGCCGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGTATGCTGGTCGTCGTGACGGAAAGCGTCCCACCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTGGGCGACGTATCGCGCCGCGTGCGTGAGATGATCTGGCATCAGATAAATGAGTTAGCGGAGGAGGGCAACGTGGTGATGGCGTGGGCTACGAATAATGAATCCGGCTTCGATTTCCAGACGTACGGCGTTAATCGGCGGATTCCGGTAGATTTAGACGGCCTGCGCCTTGTCTCGTTTTTACCGCTTGAAAATCAGTAGGTTAAACGCTCTTTAACAATGCGAGATTGTAAACCAAACGTTGGTAGGATGTTGTTGGCCGAAAAAGTGTAATAAATACAGTTATATAGTTTTAGA # Right flank : ATGGTTGAGTAGAATCGCCAGGCCAGGTGGGTGCGCTTTGCTTACCCACCCTACATATAAACTGGCGGGCCTGCCCTTAACCGACCCACAAAAACTTCCCGTGCGTGCTCTCGATTGCGCAATAAACCGGCATACGGCGCGCGTTGGGTTGCAATCGCCATGGGCAACAGACATAATGCGCCCTGCGCGTTTAACGACGCTCTCAATGGGGGCCCTGTTGGTTCTCCCGCAACGCTACTCTGTTTACCAGGTCAGGTCCGGAAGGAAGCAGCCAAGGCAGATGACGTGTGTGCCGGGATGTAGCTGGCAGGGCCCCCACCCATTTCTGCCTCTCCCCGCCGCGATAACCTGCTTCGACTGTGCTTCTTTTAAGCATCCGCTCCTGTGTTTTCCCGTTCTTCCCACAGCTATTTATTTCCGCGTTGCCAGCCGCTTTATTTTATTCTGTCGTTTAAATTTAATTATACTGTCATTTATTTGTCATCTTATTGTCATAATAG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //