Array 1 49556-52456 **** Predicted by CRISPRDetect 2.4 *** >NZ_VWOK01000006.1 Thermoanaerobacterium thermosaccharolyticum strain SP-H2 NODE_6_length_186324, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 49556 30 100.0 35 .............................. ATAAACTTTAAACCTTCACGAGTAATTTTAACTTT 49621 30 100.0 39 .............................. GTAAATTATCATCGTGTTGTTCTTCTTTTTTCTCGTCGT 49690 30 100.0 39 .............................. TTCGGCGTTCGTCATAAGATGCCAGCCGGGCCCCTTGGC 49759 30 100.0 36 .............................. TAATATCATCACCTCAATAACATTATACTATAGACT 49825 30 100.0 36 .............................. ATTTGTGCCTTTTTTAAGGCCTTTTTTTATTTCCAA 49891 30 100.0 36 .............................. TTATTGTTCAATGTCGTCAATAAACAGAGATTTGGA 49957 30 100.0 36 .............................. ATTGTTTTGACCATTGCTTGTATCATTTGTATTCCT 50023 30 100.0 37 .............................. ATTCTTAATTTAAGCGTTACGCTTGTTGCACTGCCGT 50090 30 100.0 36 .............................. CCGTAAATGGACCTTTTATACTTCTTGCCTCATCAA 50156 30 100.0 36 .............................. CTAGAAAGAAAAAAGGCTGCAACATACGCATTGTTA 50222 30 100.0 35 .............................. CGGACCATGTTCCACTTGCCATTACTTAACACCTC 50287 30 100.0 35 .............................. GCAAATCCAGAAGCAATTTGGATTAAAGAAGGTAA 50352 30 100.0 37 .............................. CTGTAAAACCCGCTATAGTTGGTGTAACGCTACGTGG 50419 30 100.0 36 .............................. CTTCAATATGCTTTGTTCCGCTGCTTGCTTTACTGT 50485 30 100.0 37 .............................. CGTTTAATCCTCAAAGTCAGACTTATGTAGCTAGAAA 50552 30 100.0 38 .............................. CGTAAACTGCTTAATGAACAAATACCAGAAGGAAAGAC 50620 30 100.0 36 .............................. TATCCTGTGGCGACAAATCTTTTGCTTGTTTGAACA 50686 30 100.0 36 .............................. TATCAAACCTGACATTGCCGTTTCGGTCTACAATAA 50752 30 100.0 36 .............................. CCCGATATTGACGAGCTGATGGCGTTTCTTGGCATT 50818 30 100.0 35 .............................. TTTCACCAATCTTTTTTGCCCATTCATACAATGTA 50883 30 100.0 37 .............................. CCGGCTATTTTAAGAAGCCGCTTATATGCTTCTTTGC 50950 30 100.0 38 .............................. TTATATTGTAGTGACCCATTATAGACACGAAAATGGAT 51018 30 100.0 36 .............................. AGTTTATAGGTGTTAAGGGAATTCCTCCAAATATGG 51084 30 100.0 37 .............................. ATGTCAGACCATTTTAATCCCAAGAGTTCACCCCGGC 51151 30 100.0 38 .............................. ATTAATTTTGCTACTTCTGCAACTGTATAAAGTATTTC 51219 30 96.7 37 .................G............ TACCTAAAGAACAAAGCAGAGATGGGCAAAGCAACAA 51286 30 100.0 37 .............................. TTAGTTCTCCAGTTATTTTGTTATAGTCCCAAATGAT 51353 30 100.0 39 .............................. ATGCAATACCTGTACCGCTGACAGGTCAACAACTCCATC 51422 30 100.0 37 .............................. ATATTCCTTATTACGTACCATGTGTCACGTGTCATAA 51489 30 96.7 35 .................G............ AAAAGCAAATATGGGATATTTTAGAATGGTTACGA 51554 30 96.7 36 .................G............ TGATATTCGTATTGGTTGCTATGGCGCATCTTGTAG 51620 30 96.7 36 .................G............ CTAATCTGTTTAAGCCTTTCAGCTTGTTCTTCCTCG 51686 30 96.7 39 .................G............ ATTTGATTGATTTTGTTTGTCAAATCGTCATATGATGCT 51755 30 96.7 35 .................G............ AGAGCTGATATTCTCTCTTCGATTGTTGGCTCTGG 51820 30 96.7 36 .................G............ TTAGAAGAGTATGAGGAAGAAATAAACCAAAAGAGA 51886 30 96.7 38 .................G............ AAATATGGAAAATCAGAATTTGGGTTGTGAACTAGTTC 51954 30 96.7 36 .................G............ CACTACCCCACGCCATTTGTTGCCATATCCATCTTC 52020 30 96.7 38 .................G............ TTGGCTTTTTGTATGCCATTGCAGTGGCATAAATTTCC 52088 30 96.7 36 .................G............ GTGTTTCATAGTTTACTGTTTCTTCTGGTGTGTATT 52154 30 96.7 39 .................G............ TAAGCTGCTAATGATCTTGTACTGATATGCAGCAATTCG 52223 30 100.0 40 .............................. GATTGAAAGACTAATTCCGATAATCTTTTCTTTATTTCCT 52293 30 100.0 36 .............................. CACGTACAACGTGTAGCTAGCGGGAAACTTGTTGTT 52359 30 96.7 38 .................G............ CCTTTATGTGCAGTTTCAAATCTTCCAGACTAACTTCG 52427 30 86.7 0 .C......T...................TT | ========== ====== ====== ====== ============================== ======================================== ================== 44 30 98.7 37 GTTTTTAGCCTACCTATAAGGGATTGAAAC # Left flank : TGTTATCGTTGCTTGTTACTGCTTGTGTTGATGTTGTTGTGTTATCAGATGTACTACTTGTCGTATCATCTGCAAAAGCCATAAATGGAATGACAACCAATGATAAAATCAACATCGCTGTAATTATTTTTTTAAACATAACATCCCTTCAAAAATATTTTTTTAAATTGTACCATAAAATTGTAAACAAACTGTGAACAATTTATAGCTAATTTGTGAACAAAATAAAAAAATACAAAATAGACATAAAAAGTTAAAATGCAAGGAGGAATTTGGAGAATTATGTAGAATATATTTATATAAAGCTGTTGTATTAAGTAATAATTTGTCGTCTACCTTAAATAGTGCAAAAAGAGCAGGACATCGACGACATTTTAGGGATTTCTTATTTAAGCTTTTATCAGGAGAGATTAGAGTTTGCAGCATTATCAAGTATGATAGCTTGACGTTGACCTGATTTTTTATAAAATAAGAGTGGCTTTATATAAGGAAGTGAATGA # Right flank : TAGTTAGGAAAAGTAAAATAAAAAATATGTCATTGCATATAATGAGGTGAGAAGTAGAATGAGTGAAATTATTTATTATGGTGCATATGGTTCAAATTTGCTGAGAGAAAGATTTCTTATATATATAATATAAAAGGCGGAGAATATAGAGGTAAAGAATATAGCGGATGTAGAGACAAAACAGAACCAATAGATATGGGTTGGATATATGCTCCTTACAGACTTTATTTTGCAAAATGTTCTCCACTATGGGAAAATAAAGGTGTAGCTTTCCTATCTGGTAAGAAAGAAAAAAATCACGAGTACTATTCAGTTATTAGACTATGGAAGATAACTGAAGAACAATTTTATGAAATCCAAAAACAAGAAGGGAAATGTTGGTATAACCTTATTTTAGAACTTGGTGAAAAAGATGGAGTTAAAATTAAAACAATAACTGGATGTTGGATCGATGAAATACAAGCTCCATCAGAAGAATATTTAAAAGTTATTGAGAAAGG # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGCCTACCTATAAGGGATTGAAAC # Alternate repeat : GTTTTTAGCCTACCTATGAGGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.70,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 2 56122-57954 **** Predicted by CRISPRDetect 2.4 *** >NZ_VWOK01000006.1 Thermoanaerobacterium thermosaccharolyticum strain SP-H2 NODE_6_length_186324, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 56122 30 100.0 36 .............................. TGATGTGAACAGTATGTATCCAGCTGTGATGCTTGA 56188 30 100.0 36 .............................. TTTTAAGATTCCTATTCGACAAGGAGGTTTTGAAGT 56254 30 100.0 37 .............................. CTACAAATGTTTTTATTGTATTGCTACTCAAACCTAA 56321 30 100.0 38 .............................. ATAGAAATGCGAAAGGGCGATATAAAGAGAATTAATAT 56389 30 100.0 37 .............................. CGTCTAATCTTTGTTACTTCGTGTCTTTTATCCATAA 56456 30 100.0 36 .............................. TTTCTTCAATAACTTTCTTTACTTTCTTATTCTCAA 56522 30 100.0 38 .............................. AAATCCCAAGCATATTCTCGTGGCGTTTCCGTTTCTGT 56590 30 100.0 37 .............................. ACCATATCAAATTTGGATCATCGAATTTCTTTTTAAT 56657 30 100.0 35 .............................. TCCAATGAATCCCCTATGCGCTTTATATTTGCATC 56722 30 100.0 37 .............................. ATTGTAGCTGTTATTGTTTTGCCAATATCACCACCGC 56789 30 100.0 35 .............................. TCAATAAGTTTTTGTGCTTCAATCCTAGCTTTTAT 56854 30 96.7 35 A............................. TCAATTACGCACTAAGCGGAACGAAAAATGCAGGC 56919 30 96.7 36 .............T................ TTTCTAAAGCTTGCAACTCATATAGATACTTCAAAC 56985 30 100.0 39 .............................. TATAAGTCAATAAACACTCATTATTCCTCCTCATTTTTG 57054 30 100.0 37 .............................. AATGAAAGGAAGATATGATATGAATATTGTTGAAAAA 57121 30 100.0 38 .............................. TTTTCTCTAATCCATCCGTGTTTTGGTGCTTTTCCCAA 57189 30 100.0 37 .............................. AAATGACCTATGATTTTTCTAAACGAAAAAATGCGGC 57256 30 100.0 39 .............................. CTTGAATGAAAAACCTTCTGGCAATGTCGTGCTTCCTTC 57325 30 100.0 37 .............................. CAATTATATGTTATGTTTAGTTACAAGTCAATTTTAA 57392 30 100.0 36 .............................. TAAATTTGAAGAATGCTGATTTTTTCTCGCTAGGTT 57458 30 100.0 37 .............................. ATGATAAATATTCTGATTTTGTACCTTATTTTGATAG 57525 30 100.0 38 .............................. TTATTTTAAGCCATTGTCGCTTTCTCGTCAGTTCTGGA 57593 30 100.0 36 .............................. ATTCAAACAGTTAATTGAACTTATAGAAAAACTTTA 57659 30 100.0 36 .............................. ATAGATCACACGGCCCCAGGGGATATAAATGTGACA 57725 30 100.0 38 .............................. AAACTAACAGGCATAGAAGAATATTTAAAAAAGATACA 57793 30 100.0 35 .............................. TGTCAGCAGGTAATTTCCATTCTAGAATCCATCTG 57858 30 96.7 37 .............................T GCAAAATAGACGTATTTGCCGATACGTCTATTTTGTT 57925 30 83.3 0 .....................G...T.TTT | ========== ====== ====== ====== ============================== ======================================= ================== 28 30 99.0 37 GTTTTTAGCCTACCTATGAGGAATTGAAAC # Left flank : CAGCATATAGAAAAAGACTGTCTTTATCATGAAATCAACAAATATAGCAAAAGCACAAAAATATTAGGCATTGGCAGAAAACCTAACATTGTGGAAAAAATACAGGAAAAAGTATTTGAAGTAGCACACAGCTTGTGTTGATGATGTGTTGTCAGATGTACTACTTATTGTATCATAAATTGTAAACAAGCTGTGAACAATTTATAGCCAATTCGTGAACAAAAATAAAAAATACAACATAGATAAGAAAAGTGAAATTGTATAAAGAGGAATTTGAAGAATTATGTAGAATATATTTATATAAAGTTGTTGTATTAAGTAATAATTTGTCGTCTACATTAGATAGTGCAAAAAGTGCTGGGCATCGACGACATTTTAGATATTTATCTTTTAAGCTTTTATTAGGAGAAAGGAGAGTTTGCGTCATTATCAAGGATGATAGCTTGACATTAACCTGATTTTTTGCAAAAAGAGAATGGCTTTGTAAAAGGAAGTGAAAG # Right flank : TGCATATAGTGAGGTGAGAAGAAAAATGAGTGAAATTATTTATTATGGTGCGTATGGGTCAAATTTGCTAAGAGAAAGGTTTCTTATATACATAAAAGGTGGAGAATATAGAGGCAAAGAATATAGAGGATGCAGAGATAAAACAGAACCAATAGATATGGGCTGGATATATGTTCCTTTACAGGCTTTATTTTGCAAGATGTTCTCCACGATGGGAAAATAAAGGTGTAGCTTTCTTATTTGACGAGAAAGAAGAAAATCCCGAGTACTATTCAGTCATTAGACTGTGGAAGATAACAGAAGAGCAGTTTTATGAAATCCAAAGACAAGAAGGCGGTTGGTATAACCTTATTTTAGAACTTGTTGAAAAAGATGGAATTGAAATTAAAACGATAACTGGACGCTGGAGAGATAAAAAACAAGCTCCATCAGAAGAATATTTAGAAGTCATTAAGAAAGGATTAAAAGAAACGACCAATTGGGATGATGAAAGAATAGAG # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGCCTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 92-8691 **** Predicted by CRISPRDetect 2.4 *** >NZ_VWOK01000021.1 Thermoanaerobacterium thermosaccharolyticum strain SP-H2 NODE_21_length_27547, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 92 30 100.0 37 .............................. TATAGCTGGTAGATAATAGTTAGGCTCGGCGCAAAGC 159 30 100.0 37 .............................. AAAGCTATTATTTCTAAAACACGAACAACACCAATAA 226 30 100.0 36 .............................. AGAAAGAGGTGCTATTCATTATCACGTTGTATTTTT 292 30 100.0 36 .............................. CGAGAATTAAAAATTAATTGTGCTTCATCTACAACT 358 30 100.0 37 .............................. TTCCTAACAAATGCTGGATGTACTTGGAAGCCCGATA 425 30 100.0 36 .............................. ACTAAAGGGTGAGGTTCATTATGAATTTTTTTAAAA 491 30 100.0 38 .............................. CAAGCAGTCTTGGAATTATTACCATACCTAACGCTGAT 559 30 100.0 36 .............................. CTTCTTGACCTTTGTTCAAGAAAATTGCACAAGTCA 625 30 100.0 36 .............................. TAATAATGCTTATGCTAGCGTTTCTTCTGCTTTAAA 691 30 100.0 39 .............................. TTAATGCCATATTCAATATCTAAAATAATAATTGCTAAT 760 30 100.0 37 .............................. ATATATCATGTGTTAGATTAATGACATCACTTTCCCT 827 30 100.0 37 .............................. CCTAATAACAAAGGAAATGTTATTATTTTATTTTGTG 894 30 100.0 35 .............................. ATATAAGCAAAAGTCTTAAAAGGTAACCACTTAAG 959 30 100.0 37 .............................. AAAAATAAAAGGAGGATCTTTAATATGGTAAAAGTAG 1026 30 100.0 37 .............................. TTTGAATATCCTAAAAATTTTACTAAAATAGTTAAAT 1093 30 100.0 37 .............................. AGGCTACTACTACGCAGACAACGACCCAGCAATAATG 1160 30 100.0 37 .............................. CTCCTCCTTCTTTTATTAAGCCGTATCGGCTACGGCG 1227 30 100.0 37 .............................. CGAAAAGGAGGCGTAAATATGGAGGCAAGAGAAACTC 1294 30 100.0 36 .............................. TCTTTTCAGCTTGGCTGCTTTGGTCATGAAGGCTAT 1360 30 100.0 39 .............................. AGCATTTTGACAAGTTCCTGTTTGGTGTTATCAACATGC 1429 30 100.0 37 .............................. ATATGTATGGTACAACAATACGAGAAGATGCAGACAT 1496 30 100.0 40 .............................. TTTTTGGATCTCTCATCTCAAAAGCATACCTAGCGTTTGA 1566 30 100.0 36 .............................. ATCAATTTCGTCTGATCGTACAAAACAAGCTCACGA 1632 30 100.0 35 .............................. TGGATATTATGGAGGTGAAATTTAAAATGAAAATA 1697 30 100.0 36 .............................. AGTATTGCGTTACTTTCTATTGATTCACCAGGAACT 1763 30 100.0 38 .............................. TACCACAAAATTCATCAGAATATATCTCAATTTTTTCT 1831 30 100.0 36 .............................. ATGAAAACAGTGTACATCAAGATTTTAGAGTGCTTT 1897 30 100.0 38 .............................. CTAACGATACAAATAGTGGTAATTCTTTGCATACTACA 1965 30 100.0 38 .............................. ACTACAAACAATAACTGTACTGCACATATTGTTAAAAA 2033 30 100.0 39 .............................. TGTAGTTTTTCACGCTTTTCAGTGCCATTTACGACACTG 2102 30 100.0 36 .............................. AAGGAACATACAATTTTAAAAAGATGACAGCCGAAG 2168 30 100.0 37 .............................. ATTGATGCTACTGTTGCTGGTTCTTCTGGTGTTTTTA 2235 30 100.0 38 .............................. GAAATATAAGGTGCAGTACGAACAAATTCCTTAGTTAC 2303 30 100.0 38 .............................. TAGAAACACCTCCAACAGAGTAGGCTAAAAGCCTACTC 2371 30 100.0 38 .............................. TTACTGCGGCAGTTATCACAGGCAGATTGATTATGTCG 2439 30 100.0 39 .............................. ACATAAGCAAATGTCTTAAAAGGTAACCATTTAAGCCAA 2508 30 100.0 35 .............................. CGTGAAGTAAAAGTAAATCCAGCATGAACAAGTAA 2573 30 100.0 38 .............................. GCATTTTCCACAGTACCGATTAGGTTTTTATTTTCATC 2641 30 100.0 36 .............................. ATACAGCCATAGGGCTAATAAACAAGCTGATAAATC 2707 30 100.0 38 .............................. TATTAGAGGTGTTAAAAATATGGATTATACACAAATAT 2775 30 100.0 38 .............................. AAACCTGTATGTGTATATGGTACACTTAAAATAGTTCC 2843 30 100.0 38 .............................. ATACTTTGTATAGGCATGGATATATTCACGTAGGAAAA 2911 30 100.0 37 .............................. TATGAAAATGAACTGGAAATAATAAACAATGCGCTAG 2978 30 100.0 35 .............................. CCTACCCTATATATTTAACAAACCTTAAAATCCAC 3043 30 100.0 39 .............................. TAACCAAATTTACGACTTTGACTAAAAAACTTTATCCAC 3112 30 100.0 37 .............................. TTTGTTAGCACTGGGTCAGCGACCCAGACCCGAGCTA 3179 30 100.0 35 .............................. ATATGAATTTTTTAAGTACATGAAAGAAGTTAATT 3244 30 100.0 37 .............................. AACAGACCGAACATGATTACTTTTGACGGAGAGATAT 3311 30 100.0 37 .............................. ACAGCAACCCTAACTGTATCTATATCCGTATTTGTTA 3378 30 100.0 35 .............................. AGTTTATCTGAATCTATTTTTTCATGTGTATCTGG 3443 30 100.0 38 .............................. CCTATTTTATATGGATAATTAGTTAATAAACCTTTTTT 3511 30 100.0 38 .............................. GGAAATTGGACAAGAGCAAGTGGATATGGGTATAACAG 3579 30 100.0 37 .............................. AATAACAAGTTTTACTATCGGGTTAGGAGGTCTTATG 3646 30 100.0 37 .............................. TGAATTTGGATCTCAATATTCCAATATTTGTATTAAG 3713 30 100.0 36 .............................. GCATTGAAAATTGCATTTTTCAGTTCGTTTGCTAAA 3779 30 100.0 40 .............................. GATGATAAGGTGCAACTTATTCCATTTGAGTCATAAACGG 3849 30 100.0 37 .............................. TAAATATATGAGAACATCTACCGGTTATAGGTGGTGG 3916 30 100.0 36 .............................. ATGCATTTAATGCCTCTATGTATGAAGATACAATTG 3982 30 100.0 37 .............................. TTGATTTTTTGATAAATACCTTCTAATTCTTTGATTT 4049 30 100.0 37 .............................. TATAGAGGTATAGAAAACTTATGGGGGAATATATGGC 4116 30 100.0 39 .............................. TAATCTCATATCTGTTTTCACTCTCTAATAATGACGTTA 4185 30 100.0 35 .............................. CTTAAAAGTCCAACAAACGTTGAAATTTCGGCATT 4250 30 100.0 37 .............................. CCTTTAAAAAATTTGCAAGTGTCGTCTAGCAGTACAC 4317 30 100.0 37 .............................. TTCCATGCAATAATAATCTTCCTGCTTTTTTCTCTTG 4384 30 100.0 39 .............................. AACGTCGTAATGTTTGAGGACTAATCCCCAATTCTCTAG 4453 30 100.0 38 .............................. TTTATAAGCAATATTTTCATCATATCACCAACTTTTGT 4521 30 100.0 36 .............................. ACCTTCACGGGAAGTTGTAAAGAATATTGCAAAAGC 4587 30 100.0 37 .............................. TAAAGAGCAAGATGGTACAGGAGACGTGTATTTTACG 4654 30 100.0 36 .............................. TTCGTTCTGTTTTTTTGTTTGGTTTTGTTATTTCTC 4720 30 100.0 38 .............................. ATACAAATCTTGATATATTGTTGAAAACTACTTCTTCG 4788 30 100.0 38 .............................. ATGGTTTTTTTCTTGTTGAACTTGCCTTTTTAATACCC 4856 30 100.0 35 .............................. ACATATAAAGGATGATAATTAAATTTCGCTATTAT 4921 30 100.0 35 .............................. ATGCTATTTTGTCATTGCTTCCTAATTCACCTTTC 4986 30 100.0 37 .............................. GTATTTCTGTGTATAAAAATATCTGTGTTCATGAATC 5053 30 100.0 36 .............................. ATTGATATATATAAATTATTATTTTCTATATATACA 5119 30 100.0 37 .............................. AATTCAGCAGGCGTGGTTTCGATAGCAATTCCTTTGA 5186 30 100.0 35 .............................. ACCTAAACACAGACAAGCTAAAAAACCCAAATTTG 5251 30 100.0 37 .............................. ACAACAACAAAAATATGCAGAAGTACTTAATCAAAAT 5318 30 100.0 36 .............................. TTTGTATCTAATTGTAATTCAATTAAACTTTTTGAT 5384 30 100.0 35 .............................. ATGAGGAAAAAAATATTAAAAAGCAATCACATAAA 5449 30 100.0 37 .............................. AAAGTATCAGAAATAACATAAGTAGTATCAACAGAAG 5516 30 100.0 41 .............................. ATTTCTATTTTTGATCTAAACTTTTTGGAAGCTTTTTTCTT 5587 30 100.0 38 .............................. TCTGTATATTCCATAAAAGGCTTCCACTCGTCTTTTGC 5655 30 100.0 37 .............................. TCTACTACCCGAAAGCCTTTTATAAATCTTAACACCC 5722 30 100.0 36 .............................. TAATTTTGCAATTCTTTTTTATAATCTTTTAATATA 5788 30 100.0 35 .............................. TTAAAATTTGACTTCTTTTGCGTTTCTATCTGCAT 5853 30 100.0 37 .............................. TTGACTTCTTCAGCTTTATTAATATCATTATAAATTC 5920 30 100.0 37 .............................. ACATATATTGATAACAGCTATAAAAGCCTGTATAACA 5987 30 100.0 37 .............................. AATCTCCAACAGTCTTGTCAAGTACCACTCTCAAAAG 6054 30 100.0 37 .............................. ATTTATAAAAAATATAGAAGATGATTATTTTGATATT 6121 30 100.0 39 .............................. AAATATTGCTTGTATCAGGCAGGTATGCAAGGGCATTTA 6190 30 100.0 37 .............................. ATTGCAAGAAAATACAGAACGGCAAGTTCTGAATTAA 6257 30 100.0 37 .............................. TTGTATGGAATAACGACAAAACACATGCAGTTATGAA 6324 30 100.0 38 .............................. CAATCCTGTCCGAACTGACCTGATGAGATTATCGTGCC 6392 30 100.0 36 .............................. AACTTTTCACGCCTGTTATCTAAGCTGCCTTCCGGC 6458 30 100.0 36 .............................. TCTACTGTTGCATTTTTTACTTCCTGACCTGCGTCC 6524 30 100.0 38 .............................. TGAGTATAATTAAAACCTCTAACTATACCCATGACAAA 6592 30 100.0 38 .............................. TTTGCTGTCTTTTGTCATAGTCTTTTTTCCTTACCTTT 6660 30 100.0 36 .............................. TTTTTTTAAATTATCACCTCTTTTCTTTTTCTTCCT 6726 30 100.0 35 .............................. TAACTAGTTACATGCTTATTATATTTTCCGATAAA 6791 30 100.0 38 .............................. TATTTTTCAAGCATTTCGTTAAGCCTATATGCTGCTTT 6859 30 100.0 37 .............................. ACCTTAAAGTTGTATTTTTTGCCTTTCTCATCGCTTA 6926 30 100.0 38 .............................. TTATGAAGCTTTTTGAGTCTGATTGTAGGCTTCGATAA 6994 30 100.0 37 .............................. CTTGATTGAAGTCAAATATAATTTGCGTTTTTGGTTT 7061 30 100.0 36 .............................. ATACTATTGTTCCAAATAAGTATGTTTTGTCTATAA 7127 30 100.0 37 .............................. ACACGTGGACGTGAAAGGAATACAAGCGTATGGAGTT 7194 30 100.0 37 .............................. TCTGTAATATCTTTTGTATTTTCTGCTATAACATAAG 7261 30 100.0 36 .............................. AGATAAGATCTTGTTGACAGTTTGTTGACACTGTTG 7327 30 100.0 36 .............................. AGCAGTTTCCTTGCTTTTGAAGGTTTGCACGACATA 7393 30 100.0 37 .............................. GGTACAGACGCCCGTGAAAACGAGCCCTATTAATCTG 7460 30 100.0 39 .............................. ATTCTTGCTGTTATGGATGGTGGAAGCCAACCATTTTTC 7529 30 100.0 35 .............................. CTATAAGTCCTGCTTCTGGTGATGTAAATTTACCT 7594 30 100.0 36 .............................. ACTTTGTGTTTGTGTCAAAACCTTTTAATGTCATTT 7660 30 100.0 35 .............................. TCAATATCCATTTCAATTTCTCCTTTCATGTTTTT 7725 30 100.0 36 .............................. GAACAAAAAAGCAAAAAAGAAGAAAAAACACAGAAC 7791 30 100.0 36 .............................. CAGTAATAGGCGTAAAAGAAAGCCTAAGAACGGTTG 7857 30 100.0 35 .............................. GCAAAAAAGGCTTGCTTACCAATTATCCGTGGCAA 7922 30 100.0 38 .............................. ATAAGTGTTAGACGTAATATTGAGATTGATGATTTAAA 7990 30 100.0 36 .............................. TATGTTTTTAAAATCGATAGTCAGCCAAAATTCTGT 8056 30 100.0 38 .............................. TTACCACAAGGTGCTTATGTATTTGATTTTTCAGATAA 8124 30 96.7 39 .................G............ TTGCGTAATGCAATAATTCTAGACTTAGGATCTAGTGTC 8193 30 96.7 37 .................G............ TATCATTCAAGGAATATGCAAATGGATCACAAATAAA 8260 30 96.7 37 .................G............ AGACAAAAGAGAGAATACTAGAATTTCAGGCATAGCC 8327 30 96.7 37 .................G............ GATAAAGAACTCAAAGAACGTGTTAAACTTTTGGCGG 8394 30 96.7 39 .................G............ TCATATATATTGTTTACTTCTTCTTTTATTTTTTCTTCA 8463 30 96.7 36 .................G............ TGCCAAGAGATGTAGAAAAAGAAGTAATAGAGATTG 8529 30 96.7 37 .................G............ TCTGTCAGCTCATCCCAACTCTTGTCTGTAAAATCGG 8596 30 96.7 36 .................G............ ACATATTCGTTTATTCTCTTTTTTACTATTGGATTA 8662 30 96.7 0 .................G............ | ========== ====== ====== ====== ============================== ========================================= ================== 129 30 99.8 37 GTTTTTAGCCTACCTATCAGGAATTGAAAC # Left flank : CTTACAAAAACAGGTAAAATCCAAGCAGAGTTGTTATTAGTAGCTTAAAAAATGTCACTTATGACACTCAAATCAAATTTTATGAGCCAAAG # Right flank : CTCCGACTTCATATCGCCAAATACCGTTATAAACTTTGTTTTTAGCCTACCTATGAGGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGGAATTGAAACCTTTAAGAAGCTTGAATTACAATCTCATAGAACTCAAAGTTTTTAGCCTACCTATGAGGAATTGAAACCTTTAAGAAGCTTGAATTACAATCTCATAGAACTCAAAGTTTTTAGCCTACCTATGAGGAATTGAAACTCAGGAAAATCTTCAACTGCTTGTTCAAAATCCCAATGTTTTTAGCCTACCTATGAGGAATTGAAACTCTCTTCAGCTAACACATCTTTTGAAAGTTTCTCTTGCGTTTTTAGCCTACCTATGAGGAATTGAAACATTTCTCAATTATTTTTGGAGCATCATTCAACATTTTGTTTTTAGCCTACCTATGAGGAATT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGCCTACCTATCAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.27,0.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 8896-11274 **** Predicted by CRISPRDetect 2.4 *** >NZ_VWOK01000021.1 Thermoanaerobacterium thermosaccharolyticum strain SP-H2 NODE_21_length_27547, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 8896 30 100.0 38 .............................. CTTTAAGAAGCTTGAATTACAATCTCATAGAACTCAAA 8964 30 100.0 37 .............................. TCAGGAAAATCTTCAACTGCTTGTTCAAAATCCCAAT 9031 30 100.0 38 .............................. TCTCTTCAGCTAACACATCTTTTGAAAGTTTCTCTTGC 9099 30 100.0 37 .............................. ATTTCTCAATTATTTTTGGAGCATCATTCAACATTTT 9166 30 100.0 39 .............................. ATAAAAGAAGAATAGAAGCTGACCGGAAAACCGGAGGCA 9235 30 100.0 38 .............................. TCGGCCATGTTTTGGGTAGGACAGTGAATGAGGAAATA 9303 30 100.0 36 .............................. GGAAATCTACAAGATGAAAAATTAATCCTTAATACA 9369 30 100.0 38 .............................. CTTGTCCTTGCCGTTGCAAACCAACGCTCCGGATATTG 9437 30 100.0 36 .............................. AGAATTAAAGGAGGCATGCTCGTATGATACAGATCA 9503 30 100.0 37 .............................. AAAGATCATTGATTAAATCGTGAACCCATGGATGCAT 9570 30 100.0 38 .............................. TATAATCCTTCAATCACCTCACCGCCTTTAAGATTTCA 9638 30 100.0 37 .............................. TGTTGACCTCTATGCGTATGCAGCTTGAAGCTGAATC 9705 30 100.0 36 .............................. TTTAATATAATCTATATATAAGCAGATTGTAGAGCC 9771 30 100.0 36 .............................. ATTATACGTGGGAAGACATAAAGAAGGGTGCGAGCA 9837 30 100.0 37 .............................. ATGAAATTGACGCCGTGACCATCCGGAACTGGCAGAA 9904 30 100.0 37 .............................. TCCAATTTTGATTGTCACGGTAACTACTGCAATCTAC 9971 30 100.0 37 .............................. AAAAATCACAAAGATGATGACGATGCTTTATATTTAG 10038 30 100.0 37 .............................. CAAGGTTGCCATCCTTGTAAGACCTGCTGTTATAGCA 10105 30 100.0 37 .............................. TAATTCTTATTGATATGATTTTTAACGAATTATCCAA 10172 30 100.0 37 .............................. TCTTCAATAACAGGTTTAAGCGAGGACAAATTTTATA 10239 30 100.0 36 .............................. ATTCTTGCACCAATCATACTATCGCCATGAACACGC 10305 30 100.0 36 .............................. TGTAATAAGTATAAATTTTATAAGTGGAAGGAGATA 10371 30 100.0 38 .............................. TTGCCTACCACAACAGTGGCATTATAATATTTCTGGCC 10439 30 100.0 37 .............................. GCCATTGAATATAAACAATCCTAACATAACATTGAGC C [10468] 10507 30 100.0 38 .............................. AAAAACGTAGACGGTTCTGACAAGAAAAGAAAAAGGGA 10575 30 100.0 39 .............................. AATGTTCAAATTCTTTGACGTCTCCGCCTTCTTCCCACG 10644 30 100.0 38 .............................. TTTCGGTACACATACCGTTAAAATGTGCAAGGAGGGAA 10712 30 100.0 37 .............................. CTGCTTCACCAAGCGTTACAATAGATATGATTGATTT 10779 30 93.3 36 CG............................ AAGCGTTAGACGATGTGAAAGAAGATGGTTGGGTGA 10845 30 100.0 37 .............................. ATCTTTGCTGTAGATCTCCTTCAATGTTTGTTGCATC 10912 30 100.0 40 .............................. CTAGCAAGTTCTATTATTTGTAATTCTTTTTTAGTAAGTT 10982 30 100.0 40 .............................. TAATATAATCGCCAGGGCATACTATGTGATAGCCTTCTAA 11052 30 96.7 36 .................C............ GAAATAGATAAAACCGTAACCTCTTTCTCTTGATTT 11118 30 96.7 37 .................C............ AAAATATAAAAAGGTATGCGCATACCTTGAAAATTTT 11185 30 93.3 29 .................C.......A.... GAAAAATTGAAAATTGAAAATGGAAGATT Deletion [11244] 11244 30 76.7 0 A............A...A.A.TC..A.... | A [11260] ========== ====== ====== ====== ============================== ======================================== ================== 36 30 98.8 37 GTTTTTAGCCTACCTATGAGGAATTGAAAC # Left flank : TTTTAGCCTACCTATGAGGAATTGAAACTCATATATATTGTTTACTTCTTCTTTTATTTTTTCTTCAGTTTTTAGCCTACCTATGAGGAATTGAAACTGCCAAGAGATGTAGAAAAAGAAGTAATAGAGATTGGTTTTTAGCCTACCTATGAGGAATTGAAACTCTGTCAGCTCATCCCAACTCTTGTCTGTAAAATCGGGTTTTTAGCCTACCTATGAGGAATTGAAACACATATTCGTTTATTCTCTTTTTTACTATTGGATTAGTTTTTAGCCTACCTATGAGGAATTGAAACTCCGACTTCATATCGCCAAATACCGTTATAAACTTTGTTTTTAGCCTACCTATGAGGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGGAATTGAAACCTTTAAGAAGCTTGAATTACAATCTCATAGAACTCAAA # Right flank : CATAATTAAAATAAAATAGAAATGCTGTGTTGAGATTTCAGCTGTTTATGAAATGATTAAAATATTTCAATTATTTTATTTTTTAGGCTGATAGATGGAGCTTTTCTGCTTTAAAATAAAAAGGAAAACTCCATATCAGATAAATATCCCAAGTAATATAGGATAAACAGGCTTCTAAGAATTACACATATTTATAATACTATGAAAGGAGGCACAGTGAATTTATCTTTTCAAAGAAGGAGGGATTGAATTTTACAAAATTATTAAATAATTAAGTAAAATGGTAGGAGGAGAGTAAAAAGATGAATATACAAAACAAATTTGCAAAAAGATTCATTGTGTTATTTCTGTCAGTCTTGTTGCTAATGACAAGCACAATATCTACATCATTTGCAGCAACAAACACATCATTTAAAGATATATCAGGACATTGGGCTGAAAAAGAAATTAATTCATGGATATCAAAAGGTTTAATTGCAGGGTACGAAGATGGTGCATTT # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGCCTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 31881-40954 **** Predicted by CRISPRDetect 2.4 *** >NZ_VWOK01000017.1 Thermoanaerobacterium thermosaccharolyticum strain SP-H2 NODE_17_length_41055, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 31881 30 100.0 38 .............................. TCTTTTTTATCAACTTTTTTGACCTTCTTTGACTTTGA 31949 30 100.0 38 .............................. AGGTCCATATCCTCCAAATCCTGTGTAAATATATCTGA 32017 30 100.0 37 .............................. CTGAACAGATATTAGCAACAGTGCCAATATCCCATTG 32084 30 100.0 37 .............................. TCCTCTGCGACGCTGTTGTACCCGATGCAAACAAATA 32151 30 100.0 38 .............................. AGTTGTATTTTTGGAACACGTAGAACTAGAGGAAATTA 32219 30 100.0 37 .............................. ACTACAGAAAACTTTTCTTGCACACCTGACAAAAGTT 32286 30 100.0 38 .............................. CTTTGCCAGTTGGATCTCGTACAAAATCACCTTTGACA 32354 30 100.0 38 .............................. TTGTTAAAACGTCTCTTTCTATATCAGGATTGTTGTAC 32422 30 100.0 36 .............................. AAGATTGATGAACTGCTTGAACGTGCAAGAAGGTGA 32488 30 100.0 37 .............................. TTCCTCCGTTGGACAATCTTCTGGGTCGGTAAATGCA 32555 30 100.0 37 .............................. GATAGAACAATACTTGGCACATATGGTGAAGTATACA 32622 30 100.0 37 .............................. AGAAGCAAAATCTCATCCATGATGGATGACGAAACTT 32689 30 100.0 38 .............................. TTTTTATTCAGGCATATCGGCTATGCCTGGACTGCGAC 32757 30 100.0 37 .............................. ATGTTTTCAGGTGTTGTTTCTGTTGCAGCATTCTTAA 32824 30 100.0 36 .............................. AGACAGCTTTTTGCTGATTTACAAGCAAAAGAAAAA 32890 30 100.0 36 .............................. CAAAATCGATACCAAGTTTTATGGGTCTAATGGCGG 32956 30 100.0 35 .............................. TCTACTGAATAAGCCAATAAGTATGTACCAAATAG 33021 30 100.0 38 .............................. AAAATAATTTGTATAACATTGTATGTACTTCATCTTTC 33089 30 100.0 37 .............................. TTCGTGCATATGCTGTAACATGCGCGGCAATAGCACA 33156 30 100.0 38 .............................. AGAGTATCTAATGCTGTATTTATCCATGAAGGCATATC 33224 30 100.0 38 .............................. CCAAAATTTGTAGAACCTATTTCAACAACGACAAAAAC 33292 30 100.0 37 .............................. TTTGGAAAAAATTTGACTTTGAGGAATTTTGCAATTC 33359 30 100.0 36 .............................. TTGCCTGTTCCTGCAATAAAAATACAGTCTAATTGT 33425 30 100.0 36 .............................. ACGCCGGAGTTACTATATGGTATTAAAAACAATTTA 33491 30 100.0 37 .............................. GATATAAAACGTGGCGCTGTTAATTCTCCCGTCATCG 33558 30 100.0 36 .............................. ACGAAAAACTTATGAAAGAATACGGAGGTGAAAAAT 33624 30 100.0 40 .............................. TCTGTTGCCTCTAAATGATTAAAGTTAGCAAACAGTTCTC 33694 30 100.0 36 .............................. ATTCGTCACATACCTGTTCTTCTCCCAGCTCATCAA 33760 30 100.0 35 .............................. GGCCTTAAATTTGGTGGCGACGGCGCAAGGGTACA 33825 30 100.0 37 .............................. TTATTACGAATGGACTGAAAAAGAACAATTACTCTTT 33892 30 100.0 37 .............................. ATCCTATAGCTGCTGCAAGTAACAAACCATGTCTCAA 33959 30 100.0 36 .............................. CAATATACAATATTTAAGATTAATGATAAAGGCAAA 34025 30 100.0 38 .............................. AAGACTTCGAGATTATCCATAATTTCACCTCCTCTCAA 34093 30 100.0 35 .............................. AATACTTTTAGTTATTGATGAAGCACAATTGATGT 34158 30 100.0 37 .............................. TTAAGCTTCCTATGCAATTGCTCATATTCAACAATTG 34225 30 100.0 37 .............................. GCTATATTAGCTATGTTCTATCTTTATAGGATTGTAT 34292 30 100.0 38 .............................. ACTTCCTCTAACCCACTTGTATATCCATTTAATTCATA 34360 30 100.0 37 .............................. GAAATAATAGCTTTTGATATGATGCTTTTCCTTGTAG 34427 30 100.0 38 .............................. TTGCAATATTTGAATAGTATTTGCTGTAATTCTGGATT 34495 30 100.0 35 .............................. GAACATCATTTCTATATCTCTTGTTTCTTCGAGCC 34560 30 100.0 38 .............................. GTAACTTTTAGCTGTACTGTTGCTCTATATGCAATTTC 34628 30 100.0 35 .............................. CTTGATCCAATAGTGGAGGTGTAATATATGAGTAC 34693 30 100.0 37 .............................. TAGGTGTTTTTGATGCCATCCAAGCTGTGAGCTGATT 34760 30 100.0 37 .............................. ACAGTGCAACAGTTTCTGCCCTAGTAATAGGTTGGTC 34827 30 100.0 35 .............................. CGCCAAAACTCATCAATGTTTGAGCTGCCTGTGTC 34892 30 100.0 36 .............................. TCAAGCCTGCCAATGGGTTGCGTGGTCCATTAACGA 34958 30 100.0 36 .............................. ACGCTGCTTTTAATGCTGCAGTTTTACCACCTCGGC 35024 30 100.0 37 .............................. CTGAAAGCACGAATGTGTCGTAGGTGGTGGCAAATAT 35091 30 100.0 38 .............................. AGAGTTGAGAATTGGAATGGTCATCAAATTCGTTTTGT 35159 30 100.0 36 .............................. AAAGCAATGCACAAACTGGGTAAGATCACAAAGTAC 35225 30 100.0 36 .............................. TCAGCGGGGCTTTTTATATCAGTGCGGCCAAGCAGG 35291 30 100.0 38 .............................. TAGCTATGTCGTATGTTATATCGCTGTCTACATCTTTC 35359 30 100.0 36 .............................. TTAGATTGGTGTATGAGTAATGCTACGACGATAAAA 35425 30 100.0 36 .............................. TCTAACAATTGCATTTGCTCGTTGTCACCTTCTATC 35491 30 100.0 37 .............................. AATCTCCAAATATAGCTGGTGGCATCTCTGCTGCCCA 35558 30 100.0 38 .............................. TTTCTTTCCCTGATGGCGTAATAACTTTTGGCGTCTTT 35626 30 100.0 38 .............................. GAAACACTTACAAAAGAAGATGCGCAAGTGAAAGACGA 35694 30 100.0 36 .............................. CTGTTAATAGCATAGTTGTTTAAGTTTCCATAAATA 35760 30 100.0 38 .............................. CTTTTAAGGCTGTAGACGACGATATTTCAAAGCTATCA 35828 30 100.0 37 .............................. AACTGTCTTTTAACCCTTCTTGAGTACCCGTAATTTC 35895 30 100.0 37 .............................. TTCGCCTGAACAATTCTTCCACAAGCTGGCGCGTTGT 35962 30 100.0 38 .............................. TGCTATGGACCGCTTTCGAAACGCGCTTCGGGCGGCCT 36030 30 100.0 38 .............................. AGATCTATTTCTGGCCATACTAACTTTTCGGCGATCTG 36098 30 100.0 37 .............................. ATGGTTCCTGTTTCGCTGCGTGTGTTGGTTACATCAC 36165 30 100.0 37 .............................. ACCCAAATTTGCATTTTTGTGCTGTCTAACGGATATA 36232 30 100.0 38 .............................. TCCCTGAACTGCTTGATTGCCGGACTTAAATTAGTGTA 36300 30 100.0 37 .............................. TTAAAAATGCTATGTTTGCAGCAGCAGATGAAACAAA 36367 30 100.0 36 .............................. ATGTGAATGACTTAACCATTGAACAGGTTGTTTCAA 36433 30 100.0 35 .............................. GTTCTAACAAAAACAAAATGTTCACCAATTTCAAC 36498 30 100.0 37 .............................. TTTTGCTTTACTCACTTTTATTTATTATTACCTGTAA 36565 30 100.0 35 .............................. ATTCAGCAAGACCTGTATAATTATTTAACCGGCAA 36630 30 100.0 37 .............................. CATTCTCGCCAGTCTGCCATATCCTGTCCGATAGCTT 36697 30 100.0 37 .............................. ACTTTTTTATTTTATTAATAAATTCTTTATATTCTTT 36764 30 100.0 36 .............................. ATTCCTTGTGAATATACTCTCAATTGCTCTGTTGTA 36830 30 100.0 37 .............................. CCTGTACTGGTTGACTTAGGTGTACCGATATTTGCAC 36897 30 100.0 38 .............................. CCTTCTCGCTTCTTTCTTTTATTGGAACTTCTCCGGCT 36965 30 100.0 36 .............................. TGATATAATATTGGTTGCACAGGATTTACGAATGAT 37031 30 100.0 35 .............................. TACAAATTTTACGATGTCAATAAAAAAGTTAGCTA 37096 30 100.0 38 .............................. TTTGCTGATCTCGATAGATGCCTCGATATTAAATCATC 37164 30 100.0 37 .............................. CCATAAATGGTTTGTCTTGATAATGGATTGTCAAACG 37231 30 100.0 37 .............................. TACTTTTCTGCGTTTCTTCTTTCCTCTGTGCTACAAT 37298 30 100.0 36 .............................. TTGGCGTGAAGCTGGCTGGCTTCCCCTCTATATCCC 37364 30 100.0 38 .............................. ACGTAATACGAACCTGGAAGCAAATCTGCAGTCCGTCC 37432 30 100.0 37 .............................. ATAAAATCTTCCATTATTTAACATCCTCCTTTTCGTT 37499 30 100.0 36 .............................. AGTTTCTCATTCAAAGTCATCAAAATTGCCATTTTT 37565 30 100.0 36 .............................. TTGCTGGGTAGTAGGTGTCTCTTGTACTGTTGTCTG 37631 30 100.0 37 .............................. TTAATATTTATTTTTGGTTTTGTGTTACCCGCCATAG 37698 30 100.0 39 .............................. GCGGCAGAAATAATGTACAAAATTGCAGTTCTTGAAGGT 37767 30 100.0 38 .............................. AGCAATATTTTGTACCTTCTTTATCTTGCATGAATTTG 37835 30 100.0 38 .............................. ACAATTTGTTTTGCTGGTCCCCAATTTGCCTTAACTGG 37903 30 100.0 37 .............................. AGTACATCCAGCGTTTATTAGGAATAATGTAACAAAG 37970 30 100.0 36 .............................. TTGGATTGTTATGACACTTTTCAAAGAGCAATTCTA 38036 30 100.0 38 .............................. TCGTCACGTCTTTCCATTTCAAGAAACATAGTTTCCTG 38104 30 100.0 37 .............................. ACAGGAAATAGTCCTAATGCTTTGAGTAGTATTGGGA 38171 30 100.0 37 .............................. GAGGAAGAAGTACCAGAAAAGTATTACCTATCAGCGG 38238 30 100.0 36 .............................. TTTTATATGTTTCTTCGTCTATCTCTGCACCAACAA 38304 30 100.0 36 .............................. TATATGAAGCAGATAACTTCACAGTAGCGTCTATAA 38370 30 100.0 36 .............................. AAGAAAAGAGAGTCCATGCTCAATTTTTCAGAATCA 38436 30 100.0 38 .............................. TAGTTTTTGTTTCGTGTTCTTCTGCCATTGAAAAGTTC 38504 30 100.0 37 .............................. ATGATTTAGGAAATTTTTCTATGACAATAGCAGGTCA 38571 30 96.7 38 ........T..................... AATTTATATGTTTTCCCAGATTTTATACCTGCATTAAT 38639 30 96.7 38 ........T..................... GTCACAAATCCAAGTGCAACAACCGGCGGGGTGGCAGA 38707 30 96.7 35 ........T..................... CTCGAAATAGATTGCTCTTCTGTATCCTGCAGTCC 38772 30 96.7 36 ........T..................... CAGACCTAAATAATTGGTCTGCACTTTGCTTTATAG 38838 30 96.7 38 ........T..................... AAAGGTTTTTCGATTGTTTTTGATTCTCTTGTTTCTTT 38906 30 96.7 38 ........T..................... ATTTATTATCCAAATCAGTATTTAATCTTGCATTCTGT 38974 30 96.7 38 ........T..................... TTTAGGGAATTAAGACAGAAAGGCATTTTAATGAAAGA 39042 30 96.7 36 ........T..................... TATCGATTTTAAAAGAAAAATCAAAAATAAGACAGC 39108 30 96.7 36 ........T..................... GGTAAAAGTGGATAAATAATAGATAAAGCTTTTGAA 39174 30 96.7 36 ........T..................... ATGATACTGTTAATTCTTTGCTTGGTCTTGATGCTA 39240 30 96.7 38 ........T..................... ATTTATTATCCAAATCAGTATTTAATCTTGCATTCTGT 39308 30 96.7 38 ........T..................... TTTAGGGAATTAAGACAGAAAGGCATTTTAATGAAAGA 39376 30 96.7 36 ........T..................... TATCGATTTTAAAAGAAAAATCAAAAATAAGACAGC 39442 30 96.7 36 ........T..................... CTGTGTTGCTTCTGGTGCCCAATCATCAATAACATA 39508 30 96.7 37 ........T..................... TCTCCATTCTCTAAACATTCATATTTATTAATACTTG 39575 30 96.7 38 ........T..................... AGTTTTTTTCTTCCTTTGTTGAAAAATTTATTTTGACG 39643 30 96.7 37 ........T..................... GCAAATAGTCTATATTATTTTGAACGGCTATTGCAAT 39710 30 96.7 36 ........T..................... CAGTAAAGCAGGAAAAGCGTGAAGAATGGCTTGATG 39776 30 96.7 36 ........T..................... AAATAGACCCCGGCTGCTTGTAGGCTGCTTGTCGGC 39842 30 96.7 37 ........T..................... TACTATCTTTTTATACCTGCTTTTTTCGTGTTTTTTC 39909 30 96.7 37 ........T..................... TCAGACAAGTATTAAAAAATTAGGCGAAACATTTGGA 39976 30 100.0 39 .............................. CAAAAATATTACAGATAATAATAATATATTGCATTATTT 40045 30 100.0 40 .............................. AACCTGGAATAAATCAAAATGATATTATTAATTATGCAAA 40115 30 100.0 40 .............................. CCAAATAGATCCTTAAGATCTCCTTTTTCTCTGTTTTCAA 40185 30 100.0 36 .............................. TATTGATTAAATTTATCACTACTAATATTAAATGTT 40251 30 100.0 36 .............................. AGAATTTGTGAACAAATTTTACAGTTATGCTGAAAT 40317 30 100.0 39 .............................. AATTCATTAACATTTTAAAGGTGGTGGTGGCGGAATGGT 40386 30 100.0 37 .............................. ACATATAAACATAAACAGACTTTAAAAAATCATACTC 40453 30 100.0 39 .............................. ATTCTAAGTCTTTTTTGTCAACCTCTTTTAATTTATTAT 40522 30 100.0 36 .............................. AAAGGAAGCTATGAGGAAGTTAAAAGAGAGCTTAAA 40588 30 100.0 38 .............................. TTTAAAAAATACTGTCTACGTTCCTTTAATCTGTTAAG 40656 30 100.0 38 .............................. TTGTTACGAATTCAGCGTAGTGAATTTTCTTTTTCTTA 40724 30 100.0 35 .............................. AATTTAGATAGCGATACTCTTGCTGGTAATGTTGC 40789 30 100.0 38 .............................. GCTTCTGCTTTAACTACTAAGTTTCCTTTTAGTTTGCC 40857 30 100.0 38 .............................. ATATGTATGGCACAACAATACGAGAAGAAGCAGACATA 40925 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 136 30 99.5 37 GTTTTTAGCCTACCTATCAGGAATTGAAAC # Left flank : ATAGTGATGATGGTACACCCAGCATAAGCAAATTTAAGCTTATTGATGACGGATATTACAAAGTTGATGCATATATAGAATATAATGATGAGGCAATTGAACTATGGCAAAGATATTTAGAACTTAAAAATGTAAAAAATCTTTTTAAAAGAAGAAACATATTTAATGAGTTTAAAGCTGATTTTTATAAATATGTAATTTCAATTCCAGAGAAAACTGAAAACATGCCGGCGGATGTAGAAGGTTTTAAATATGTAAACAGTGATTCAATAAATGAATATTATGATAAGGAGACGGGATTTATAACAAAAGGTGTTTTAAGCATCTGGTAATAAGATGTCGTCGATGTCCAATAGTGCAAAAAGTGCTGGAGATCGACGACATTTTTATTTTTTAGACACGTTGAATTATCTGTGTTTTATGATATAATAAGGTTGTAAACTTTACATAAATAGTATATTATATTTTAAGACTTTGTTGGATTTTAGGCATTTTAACGA # Right flank : TGAAATACTGCAAAGATTGTAAATTTGATTAAGGTGTCAAAAGTATTTTTTTCATCCAAGTTTAGATGAAATATGGTAAAATAGAAATATAAACAAAAGGA # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGCCTACCTATCAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [78.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,0.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //