Array 1 246777-244567 **** Predicted by CRISPRDetect 2.4 *** >NZ_WNDA01000005.1 Parabacteroides merdae strain BIOML-A16 scaffold5_size337317, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 246776 32 100.0 33 ................................ ACGAACATGAGCATAAGCTTCAGCCCATTTTTT 246711 32 100.0 34 ................................ TCAAAACTACGGAACATGATAAAGTTGCGGAGAG 246645 32 100.0 34 ................................ AGGCATATTCAAAGCATCATAGCGAACATTAACG 246579 32 100.0 34 ................................ TCGCCATCTATTGCGCTCAATGGAGAGGGTAATA 246513 32 100.0 35 ................................ ATTTTTGTTTGGATCGGGAACATCATCGGCATAAA 246446 32 100.0 34 ................................ TAGAGATCTCCTGTATGCCTTTTATTGCCAAAGC 246380 32 100.0 34 ................................ CAAGCCTTGCAATCTTTATTACAACCCTTGGAAC 246314 32 100.0 34 ................................ TATGAAAGAATATACCGTTATATGTTTTATAACA 246248 32 100.0 33 ................................ AGGAAGGTGGTGCGTTAAAGCCGTCCGGTCTTG 246183 32 100.0 34 ................................ TTGACATCACCAATTTTATTAAAAACGTTTGCCA 246117 32 100.0 35 ................................ CCTTTAATACGACATACACACCACTACCTTGAAGA 246050 32 100.0 35 ................................ ACGGCGACGAGCCTGCATAATACGGCGTTTAGCAG 245983 32 100.0 34 ................................ TGCCAATTAGAATCAACACGAGAAACGGGTATGC 245917 32 100.0 34 ................................ TTAACAATCGCCGTTTTGATCTCGAGTGTGAAGA 245851 32 100.0 34 ................................ CTCTGGTCAGAGCCCTATGGATCGCGTTTATATG 245785 32 100.0 34 ................................ AATGAATATATTTATACTTTAACAGAACGTTTGG 245719 32 100.0 34 ................................ CCCCTGAACTTAAAGTTGATGCGGATAGAAATAC 245653 32 100.0 34 ................................ CTTTAATTGATGTAGAAACGAAGATGGCTTTAAA 245587 32 100.0 33 ................................ AGAAACAATGCTACTGTAGATAAAGTAAGAATT 245522 32 100.0 34 ................................ TAATGGGGGAACCGTTTTACAAACAGCCAATATA 245456 32 100.0 33 ................................ AAGAGAAGGATTGCCTAAAATCTCATCTCTACG 245391 32 100.0 34 ................................ ACGACTGATTTAGGCCGCATTACTCCGGTATTTA 245325 32 100.0 33 ................................ ACGGATGTAGATACGATCAAAATCCAAGGCCTT 245260 32 100.0 35 ................................ TGATAAAACAGGAATAAAACACAAAAAACCGTTCC 245193 32 100.0 34 ................................ AGGATTGTATGTAAGTGTAATAAAAAGAGGTGCG 245127 32 100.0 33 ................................ CTGTTTGTCTCTTACTCCTTATTCCCAATTCAT 245062 32 100.0 35 ................................ ACGAATATAAATACGATCAAAGCCCAAGGCCTTTT 244995 32 100.0 33 ................................ TTTGAATTTACCCCCTTTAGAGGATATGGAAGC 244930 32 100.0 33 ................................ AAGGTGCTGCCTATGCTAAAACTCTCGCTGAGA 244865 32 100.0 35 ................................ GACTGTCTGAGTAATAGGATTAACAATAATGTCAC 244798 32 100.0 36 ................................ TTATATTGTACATCTATTGCCATCAAATGAATCATT 244730 32 100.0 34 ................................ AATGGACGAGCCGTTGAAAGAGCTGTCATACTTG 244664 32 100.0 34 ................................ AGTTGACAACCGGTACGCGTGTCCTTCGGAGTCT 244598 32 84.4 0 .......................C....GCCA | ========== ====== ====== ====== ================================ ==================================== ================== 34 32 99.5 34 GTCGTACCTTATATAGGTACGTGGATTGAAAC # Left flank : TTTAGATAATTATCCGGTCTTTTTAATGAAGTAAGTTCATGTATGTTCTAGTTACATATGACGTAGAAACGATGACTTCCGACGGACAGCGCAGGTTACGTCAGGTAGCACGTCAATGCCTGAATTATGGCCAACGCGTCCAAAATTCCGTTTTTGAATGCTCTGTCTCGCCTGCTCAATTTACCGAGTTAAGATTAAAACTATCGGATATCATCGATCATAAAAAAGATAGTATTCGTTTCTATTTCTTGGGAAATAATTATTCTAAAAGAGTTGAATACATAGGTGTCGTCACATCCTATAATGTAGAAGATGAACTTATAATATAACTGTTTGCGAACATTAAGCATTAACAAAAAGCTGGAGTTTTCGCAATCATTGATTATTAGCCTATTAAACACTCCTATTAGTTTTATTTCATCAATAAAAAATCCAAAAAGTTTATTATCGCATAAATGCATTGATAACAGACTGTAAATGTTTGCATTATTTGTAATGCA # Right flank : GAAGTTGATACACGTGTCATAGCCGTCGCACCCGTAAAGGATGCGACGGTAATGTTATTGTTGTAATTCAGACACATTTCAATCCAAACGCACTATTATAACCAACTCAATCTGTAACACCTATCACATCAACAGTAGTTCCTCTACCCAAGCACCGTCCAAAACCAATCCGGCCCGTTCATCATAACACCTTCCATCTTCCAATATAAAAATCCCAGCATACACTCCCACTGTTCCCTGTTTACATAACTGTTCGAAATCCCATTTTCTAATGGATACGCTATACTGCTGTAGCTTACGTAACAACCAAAATTCCGGGCCAATCCGCTTCAGTTCCTCCAGTAAGGTTGCACCATCACCATAGCCGACCAAGATGGATACCGAGTCTTTATCGTCTATCAACCGGAACTTCTCTGCAGCAGTTGCAAACATAAAGTGCATTTCTGCAAAACCTTTATATAACAGACCTTTTATATTAGCCTTATCAAAGGTGTTACAAT # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTACCTTATATAGGTACGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.38%AT] # Reference repeat match prediction: R [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.40,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 254269-252457 **** Predicted by CRISPRDetect 2.4 *** >NZ_WNDA01000005.1 Parabacteroides merdae strain BIOML-A16 scaffold5_size337317, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================= ================== 254268 32 100.0 34 ................................ GCAATGCCTCCAGGAGACGGGAGCCAATCAGAAG 254202 32 100.0 34 ................................ TAATCGGGGTACAACAACTCGAGAAATAGGTAAT 254136 32 100.0 34 ................................ CAAATAGAGCGACCAGCCTTAATACCAAAAAAAC 254070 32 100.0 35 ................................ TCCGAAGGTGGTGCTTTATCTGAATCCGGTTTGGG 254003 32 100.0 33 ................................ AACCTCAAACATTTAAGTAATGGCAAACGTTTT 253938 32 100.0 35 ................................ ACGACGCCGAGCTTGCATAATACGACGTTTAGCAG 253871 32 100.0 32 ................................ CGTCACCCGGCAATGTTGCGAAAAAAGTACTA 253807 32 100.0 35 ................................ CGTAAATACGGGAGTAATACGACCAAGGTCAGTAG 253740 32 100.0 34 ................................ ATCAGAAGGAAGTCGCTTAACGACAACTCGATGA 253674 32 100.0 33 ................................ AGGATTGAAAGAATCAAGACGCTCGCGATAAGT 253609 32 100.0 33 ................................ TTAAGGCCCAGGTGTCTGAAACTTGGTCTCGTA 253544 32 100.0 34 ................................ CAAACGACACAGTTACCATTAGACTCATAACCAG 253478 32 100.0 36 ................................ GATGATTGCTCATTCTTATCCCCTCATGCCATCAGT 253410 32 100.0 34 ................................ CTTATAGCTAAATCCACGGAATTGATTAAGCTCA 253344 32 100.0 34 ................................ CTTAATGGTAAAAAGACATATAATCGTTGGATAA 253278 32 100.0 33 ................................ GCTATCTCGCGTGTGGCGAGTATGGCTCTAAAA 253213 32 100.0 33 ................................ ATCTTAGTTTGGATCGGAAACATCATCGGCATG 253148 32 100.0 34 ................................ TTGAAAAAACATTTCGCAAACAACTGAAAAAGAT 253082 32 100.0 34 ................................ ATGAAGTTGCAAATGTTACCTTAGCATTATAGAA 253016 32 100.0 32 ................................ TGTTATGTCGCGTTTAAAGGATGCTGGTTTAA 252952 32 100.0 32 ................................ TAAAATAGCTAAAAACAACATTTGGGATATGA 252888 32 100.0 35 ................................ CCCGACCAAGCATGGACAGTCACCGGCAAAACCAA 252821 32 100.0 32 ................................ TTGTGCAGCAATGGCGCGCTTTTGGCGTCTAC 252757 32 100.0 34 ................................ ATTGCCCTCAAAAGGAATACAATAATCCCATAAT 252691 32 100.0 35 ................................ GAAATCAACCTTATAAGCATTACCGTCCTCGTCAA 252624 32 100.0 33 ................................ TTACCAGAGTGCAGGAGTTTTTTCGCAATGCCA 252559 32 100.0 39 ................................ GTCCGTTTTAGAATACAACAGTAATAATGCAACTAATAA 252488 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ======================================= ================== 28 32 100.0 34 GTCGCATCTTTTACAGATGCGTGGATTGAAAC # Left flank : TACTTCCAGGAGATCCCGTCTCCCCAGAGCCTGTGAAGTCATCCCACTCGTTCCCATCCGCAAGAAACCGAACAACCAGTAAATAATATTGAACAGCATCCCCCCTACCGCAATCGCCCCGATATAGGAAGCGGCCCCCAAATGTCCGACAATCGCCACATCGACCAATCCCAACAAAGGAACCGTTATATTGGATACAATAGAAGGAAGCGCTAACTGAAGTATCTTTTTATTCATTATTTATCGTATCTATAAAAACTATTCCTAACTTTGTCAGCAAAGTTACAGATTACTTTAGAAATAACATGATTACACTTATGTTTCAATAACAAAAACGCGAACCCTAAGTAATTGTAAAAAACGTTGGATGTTCGCATCCTCTATAAATCATACACTTATAGATTTATTTAGAGAATATGAACATTTATTGCTTTTCTACTTTATCATTCGCAAAATTACAATTTAAAAGTGTCATCAATAAAGCTTTTCACAAACATGGA # Right flank : CACTCTTCAAAGGCGCGTTTGAACGTGTCTTTAATGTCGCATCCTTTACGGGGACAACTATTTATAATATTTTTTGCAAGAAGATTACAGGATTAAAATATTTGTTTGTTAGAAAATAAAATATATCTTTGTTGAACAGAGTTATAAAGATACCTTATTACTCAAAGCATAAACACCTTATATTACGTTAACCTAAACATATGATATATACAAATAAAGAATACTGTCTTGAGGTTAAAGGAAGCATGGCCTGCTTTACCCGTCCGGAGATGAAAGTCGAAAGAGTTAGCTACGACATAATAACGCCATCTGCTGCCCGAGCTATTTTCGAATCTATATTTTGGAAACCAGCCATACAATGGAATATTACTCGAATAGAAGTATTAAATCCAATCAGATGGTTTTCCATGAAAAGAAATGAGATTGGAAGTTTAATGAGCCCCCGTTCATCCGGATTATTCATCGAAGATAATCGGCAACAAAAATCCAGTTTGTTACTA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCTTTTACAGATGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched TTCGCATCTTATATGGATGCGTGGATTGAAAT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-1.50,-1.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //