Array 1 1-1147 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JRPN01000119.1 Bradyrhizobium japonicum strain Is-34 contig_119, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                      	Spacer_Sequence                        	Insertion/Deletion
==========	======	======	======	=====================================	=======================================	==================
         1	    37	 100.0	    36	.....................................	TATGACTGTACATGCCGCTTCTATGTCGACCGTTGA   	
        74	    37	 100.0	    37	.....................................	CTAAAGTGTTTCGCATATTCACACCCCACGATAAGTT  	
       148	    37	 100.0	    37	.....................................	TGATAGTGTTTTGAACGAGTTCGTACATCAGGTTGTA  	
       222	    37	  97.3	    37	....................................T	GAGTAAGCGATGTACCAGCAACCTTCATCAGCAGGAT  	
       296	    37	 100.0	    37	.....................................	ATGTTTCAATGTGTGTTTTGTTCAATTGATCCAATAA  	
       370	    37	 100.0	    39	.....................................	TGCACCATATCCAGCCATAAGCAGCCTTAATGCTCTTAC	
       446	    37	 100.0	    36	.....................................	TCATCCTTGCAGACAGAGCAGTCATATGCCGAGGAG   	
       519	    37	 100.0	    39	.....................................	TCGGTTCGTACGTGTGTGGCGCAGGTCTGCTCATATGAA	
       595	    37	 100.0	    37	.....................................	TGCCGATCCTGTGTTGCAGCGCCCCGATGACGGTTCC  	
       669	    37	 100.0	    37	.....................................	GGTTGAACGTCGTCCTGGCTTAGGCACATTGTGATCT  	
       743	    37	 100.0	    37	.....................................	AAGTCGCTCGGACACGTATTTTATATTGGCGCCAGCT  	
       817	    37	 100.0	    37	.....................................	TATGTGCAGGCTTGTCCGACCCTTTTACTTCTACAGC  	
       891	    37	 100.0	    36	.....................................	AATTCTGGTTTTGACAAACCGTTTTTATATAGCACT   	
       964	    37	 100.0	    37	.....................................	TGCAACGAGCAGCTACATGAAAGCCGGTAGTAAAAAC  	
      1038	    37	 100.0	    36	.....................................	CCGGTGACGCCTCTGGGCTTCTCTTTCTGTAGTTTA   	
      1111	    37	 100.0	     0	.....................................	|                                      	
==========	======	======	======	=====================================	=======================================	==================
        16	    37	  99.8	    37	GTTACATTGAGGACCCGAGGAACGAGGGGACTGAAAG	                                       	       

# Left flank :   |
# Right flank :  GAACATCCAACTTTGAATTTGTAGTATCCAATCGTCCTTGTCCAACTCACAGACGTCGCACCCCGTGTGGGTGCGTGGATTGAAACAATTTGACCGTTTTCGTCTTGTTATCGTAATCTACAGTCGCACCCCGTGTGGGGTAAGCGTCAAATACTTCCCACCTATTAACCCCATATCGGCTATGAGATAATGTTCCCCAGAATGAAGAGGGGAGGATTTTCTTATGAGTAAGCGTAAAATAGTCCCTATCCTTGAACAAGGTGGGGACTATTTTACGCTTACTTTCAAGGAAAGGGATGGTTCAAATAATACTGCAGATAGGGACGCTTAACGCGTCGAGCAGGTAAAATAAAATTGGAAGACAAATCAAAAGCCACAGATGATAAAAATCTGCGGCTTTTCTCTGATTTTTAAGCATAACTTAGGAAGTGCACTGTCACCTATCCATTACAGGTTGCATGTATAAACCGCTGGAAGTATAATAAAACTAAAGAAAGGGT

# Questionable array : NO	 Score: 3.25
# 	Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTACATTGAGGACCCGAGGAACGAGGGGACTGAAAG
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     F [12,5] Score: 0.37/0.37
# 	Reference repeat match prediction:         NA 
# 	Secondary Structural analysis prediction:  F [-7.40,-2.90] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [1-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [0.74,0.41   Confidence: LOW] 

# Array family : NA
//