Array 1 24406-24201 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJLM01000166.1 Chlorogloeopsis fritschii PCC 9212 contig00191, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =============================================== ================== 24405 37 97.3 47 ..A.................................. CTGCGGAAAATACCTTTAGGAGTGCGCGATTTACTGAAATGAGAAAG 24321 37 100.0 47 ..................................... TTGCGGAAAACACCAAAATGAGAAAGCGATCGGGCATTTTGAGAACT 24237 37 94.6 0 ......A..A........................... | ========== ====== ====== ====== ===================================== =============================================== ================== 3 37 97.3 48 CATTTAGGCTTTTTGAGTAAGCAATATGCCTTTTTGC # Left flank : ATATCGAGTCGCAACTCCCAACAGCATATGCTCTGCCATATCTGCCAACTCGCGCTCTGTTTGGAGCATTTCACGGTATAACTTATCCAAGTTGGAAAGGGCAGTATTGTAGGTATTTTCTTGAGTTCGCATCTTCTCAATAAGAGTTGAGAAGGTAGATAAGGTAAGTCCATTGCCTACATTTAAATTCGGATCAATTGAGTTCATGCTAGCCGCACGACGCACTGCTCTTTCTAAAATTTTAGAGCTTCTTTTTTGACGAGCCATAATCTACACCTTCTTCTCAATTACGGGTAATAATATTTACTTTAATAATTTCCCGTATTGATTGCCTTGAGAGTATTTCGGCAAATCTGCAATAGCTTTTGCTACAAAGCGATCGCGATCGTGAGTGCAAGAATTACTGATATGAGTTAGCAAATAAGTAAATTAAGAATGTAATTTGCCGTTTGCTTGCGGAAAACACTAAAATGAGTGCGCGATCTACCGAAATGAGAAGG # Right flank : TTATTGAATCGACTTGATCTATTTTTTCGATACTGTTGGATTTAAATACAACCCCTATCTATTCGTCAATTAACCATCCGCGCTGTATACCATGTTCAATCCCGCCAGTCCAATCCATTATTAAATGGTTTCGCACCTTTTTAAAGAGGTGTTGCACAACAATCGGGTTAATTGGATTTTTGACATAGGTTAATTCGTATCTAAACTCTCGGTCAGTATTTTTCTGCTGACGTAGTACATAAATTTGGTCAACCTTATATTTTCGTAAATTTACATCACTGGTTAGCTTAACCCACTCCATGACCACAAGATACAAACTATTAGGATTTCTTGCCTTTAAATCTTCTGCTGCGCGTGAAGAACCTTCAAGCATAGTTTTGTCAAGGTACGTCTTACACTCGATTGCAACAACTGGTATGTCAAAAATGTGTGTCTCGGTGTTACCTGTAACTGTCACCTCAGAATATGTACTTGGCTCTTCTTTTAGAAGAGGAAGTATC # Questionable array : NO Score: 2.53 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CATTTAGGCTTTTTGAGTAAGCAATATGCCTTTTTGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.40,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 227-40 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJLM01000148.1 Chlorogloeopsis fritschii PCC 9212 contig00155, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 226 36 100.0 42 .................................... CTCCGTTGTTTGCACTGTTTCAACTGAAACGCTACCAGCAAA 148 36 100.0 37 .................................... TTGGCACGGCTATATTCCCCAGCAAGCACTTAACAAT 75 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================== ================== 3 36 100.0 40 GTTTCCATCCCCGTTAGGGGAAAAGGTTAGGGAAAG # Left flank : TTTGATAAGCCGAGAGGAGTCTTTTTGATACTAGT # Right flank : GAGGGGAGTGCACCATCTTTGGTGCTAGAGGGGTAATAAT # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCCCCGTTAGGGGAAAAGGTTAGGGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [33.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.74 Confidence: HIGH] # Array family : NA // Array 1 22764-21637 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJLM01000018.1 Chlorogloeopsis fritschii PCC 9212 contig00019, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 22763 37 94.6 34 ....T....T........................... GAGAATGGTTCGCCTCTATCCACCACTCTTGGGT 22692 37 100.0 35 ..................................... CCATCAATGGCGGTGCTTCCACTGGAGATACAAAA 22620 37 100.0 42 ..................................... TCAATTGGCTGGCAGTGCCGATAGCAGCTATCCAATTCAGTT 22541 37 100.0 36 ..................................... CTCAAAAATGAGGTGATGAATTTCGCTGCTTCACTT 22468 37 100.0 37 ..................................... TGAAGCGAAAGGCTTGATTAAATTTCACCCAGTACCC 22394 37 100.0 34 ..................................... GTTCGTTTCTTACTGTTGCAGTGCTTTTAGTTTT 22323 37 100.0 35 ..................................... ATCGCTACCAAGGCTGACGGTAAAGCTGATAAAGC 22251 37 100.0 39 ..................................... TTTTTACCTTCAACGAAGCGCTTGGCGCTTACATCTTGC 22175 37 100.0 35 ..................................... GTTCCCCAAAGCGCCCGATGCTCAATTAAATCCGC 22103 37 100.0 36 ..................................... TATGGTACCAACGCTGACTTAATATTTATAGATCGG 22030 37 100.0 30 ..................................... TTCTTCAAAAGCTTGCCAGCCTATCATTGT 21963 37 100.0 35 ..................................... GTTCGCCTTCATCAAGGCTCGCAACTGCGCTCGTA 21891 37 100.0 35 ..................................... GGTATTGCAGCTACTACTATGGCAGTTGGAACTAT 21819 37 100.0 35 ..................................... ATAAAACGATGTCCGATAACTGGTACGTTTGGGAT 21747 37 100.0 37 ..................................... CTTACAGGCTATTATGCGATATACCTGGATGCCAAAG 21673 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 16 37 99.7 36 GTTTCAATCCCTAATAGGGATTAATTGAAATTTCAAC # Left flank : TTGGATTGCCAATAAATTGCAAACTATCCAAACCACGCAAGTCTACAATCCAATATTCTGGAATGTTAAGAAAAGCGTATTCTTCCACCTTTCTTGCGTAATCATCTTGCCAATTTGTACTCACAACTTCAGCAACAAGCTTGATTGTACTGCCGTTACATATAATAGGTTCTTTTTGCCAGAGTGGTTCTTTACTAAGTTCTGCTTGATCTAAAACAATGACATCAGGGCGCAACGCTGTGGCTTCCGCAGCCGGCGGTTTGAGCAGGCAAGTTTTTGGAATTAGCCAATTGAAATTAGAACTAAAAATTTCGACATAGATTCTACCTGCAATACTACCAGCTACAGCTTCATGAGGGCCTGTAGGTTCCATGTCTCTGAGTTCTCCGTCAATTAGTTCATAACGTGTATTGTCACCATATTGGGCAATAAATTCTTGGAAAGTTAGTATTTTGGGTGGAGTGTAAGTCATGTGTATTTGAGTGTAGGAAATAGAATGT # Right flank : AGCGGTAGCCCGAAAGTCAATCAATATTAGGTTTTCAAGGTTCATTTGCGCGGATGGAGAAATCATAGCATAAGAATTTTGGATTGAGTAGGGTGTAAATGGCTGAAACCTAGTCTAGGCAAGGAGCGCGGATGGCTGGTCAGTAAATATTCCTCTAAAACTTTGTGCAGTAAGAAATTCAGCTATTTTTCCCTGAACTGATTTTTCAACACCTACCCATCCGCGCATTCAGCAAAGAAAATACTATCATCGCGGGGTTGTTCACCACCGATACGTTCAACCTTACCAAAACAGCAGGCGCACATAAAGTAAAAGCGAATACTATCAGTATCAGGTTTAATTAACTTGTTGAGGCGCGATCGCAATTTTGCATATTGAGTATCGGTAAGCTGGCACTCAAAGACGCTATACTGCACCCACTGCCCATACGACTTGAGAACTTTGTGGATTTTTGTACGGCGCTTGTCTTCTGAAATATCATAAGACACAACAACATTCAT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAATCCCTAATAGGGATTAATTGAAATTTCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 1 57174-54070 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJLM01000040.1 Chlorogloeopsis fritschii PCC 9212 contig00042, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 57173 36 100.0 39 .................................... TTGTAGAACTCCACAAAGCCAGGCAGAATAAGCAGCAAA 57098 36 100.0 36 .................................... CTCAAAGCCATACTCTGAGTGGGTAGAGACACAATT 57026 36 100.0 35 .................................... GGCCTTTAAGCACTTCTACCTCTTCGCCGAAAATA 56955 36 100.0 42 .................................... GGTAGGAGCGGATGTGGCGCGTCTGCCGTGTGCTCGTCTTGA 56877 36 100.0 35 .................................... GAGCACCGCATAGCCGCCTGCCTCAAGCCCGGCGA 56806 36 100.0 43 .................................... CCGACGCGGCCAAGGCCGGCGCCGCCGCCAAGGCCTGCAAGAT 56727 36 100.0 36 .................................... TTCAGAGTTAATGATTTTTCTGTCTAATGTGATGAA 56655 36 100.0 34 .................................... GTTGAACAATTTCATGAGCTTTGCGATCGCTTCT 56585 36 100.0 37 .................................... CTCTAAGAGCAAAGGCAACTTCTTCAATAAATTGAAA 56512 36 100.0 36 .................................... ACTTAAAATATGCAGTAAACAATGAATCAAATCAGG 56440 36 100.0 39 .................................... ATACTGAGCATTGACAGTAGAAGGTAATTCAGTTGAATT 56365 36 100.0 36 .................................... TCATAAGGCTTTGTTGTCTGCATATTTTTTATTACT 56293 36 100.0 38 .................................... AGAAAATAATTTTTCTACTTCCCAATAACTTAAAGTAT 56219 36 100.0 37 .................................... ACCCAGAATACGACCATTACTGGCTTGTGTGTAACGG 56146 36 100.0 36 .................................... CTTGATACGTGCGCGGGGAGTTGTTAAGACTTTGCG 56074 36 100.0 40 .................................... GTTGGAGGATAGACAATGAATAAGCCAGGGCTAAGGGGTC 55998 36 100.0 39 .................................... CTCCCAGACAGGAGGCATGAACAGTGGGGTTTTCTTGCC 55923 36 100.0 34 .................................... AATGGGGAACCCATACTATGGGAACTAGAGCAGA 55853 36 100.0 39 .................................... TCTCTTAGAGCCTATCCGAAAACCCAATGTATGAGGAGG 55778 36 100.0 31 .................................... TTATTACTAGCTGCGTCCACCTCAAAAACAT 55711 36 100.0 36 .................................... CCAAAACAGTATTCATCTTCTGCACCACAGAACCAC 55639 36 100.0 36 .................................... GGAGAAGATGACCGCCTTGAGGATCTAGTGGAGTGT 55567 36 100.0 36 .................................... GTTTTTAGTGCCGCGCCCGCGTAAGATTGATCCGGA 55495 36 100.0 38 .................................... GTTGGTCAAAAGACTTTAGTTTAGTTCCTGTTTTTACA 55421 36 100.0 38 .................................... ATCAATTAATTCCTCTTCGTCTACCGCATCACGAGGAG 55347 36 100.0 36 .................................... TAGGATCCGCTGAGATTGAGAGGATGGTTGATGTTG 55275 36 100.0 36 .................................... GTGTTGTATGACTTCCAAATCGTACAACATCTAATA 55203 36 100.0 37 .................................... CTTAGAGAAATCTTTCTCCAGAATCTGAAACTTAATC 55130 36 100.0 41 .................................... AACAAGTGGGCATCTTGTTCATTACCTGGAGTTTTCATCAA 55053 36 100.0 39 .................................... GTGATAAATTCAGAGGAGCTTTTAGGATCAACCCACCTC 54978 36 100.0 35 .................................... TCAGCAGCTTCAGGAGAATAGCCAGAAAGACCTAA 54907 36 100.0 37 .................................... TCTATACCAGCTAAATAATAAGCTGACTCTAGAAACT 54834 36 100.0 39 .................................... TCGTGTTCGCTTGCAGATGCTTGTGCGTGTCTGAAAATT 54759 36 100.0 36 .................................... TTAACTATTTCATTGAAAGTTTTTAATTCTTCTTTG 54687 36 100.0 41 .................................... TTACTGGTGCAGACAACCCCTCAATTGCGTTTTGTGCTGTA 54610 36 100.0 37 .................................... TTCAATGAATGAGATTAATTACATGGATGAGTATGAG 54537 36 100.0 36 .................................... TTTGGATTAGCTTGAGCAGGTGCAATAGTAACCAAG 54465 36 100.0 40 .................................... ACATCTTTTGCTTACGGATCTTTTTGTCCGTTTTTCTGGT 54389 36 100.0 34 .................................... TTAGTTTCTATCTCTCTTATAAACTGTTCTCTTT 54319 36 97.2 35 ...................................T TCAATTGGGCGATCGCCAAATTTGAATAGCCATTT 54248 36 97.2 35 ...................................T ATTCAGACAAGTTACCGATAAATGTAATGCTGGTT 54177 36 97.2 36 ......................T............. TTGAATGATATGAATCAAGACCTTCTCTTAAATCTT 54105 36 97.2 0 ...................................G | ========== ====== ====== ====== ==================================== =========================================== ================== 43 36 99.7 37 GTCTCTACTCGCTAGAGAAAATAATTGATTGGAAAC # Left flank : CACAGGTTTATCAGCCTTATCTGATTCGCTAATTTTATGCTTTTGTATGTGGTAGCTTATGATATTCCTTGCGATAAGCGGCGTAAAAAAGTCTCAGATTTGTTGGAAGGCTACGGAATTCGAGTACAGTACAGTGTTTTTGAATGTGTGTTGACAACTTCACAATATAATGAGTTACATCAGCGATTGCGGAAGAAAGTAAAGTTATCGGAGGATAAAATACGTTTTTATCCTTTGTCGGCTCACACTTTAAATCAAATTCAAGTTTGGGGTGGGCCTCCAGTGACAGAAATGCCTGGTTCAACTATTATTTAGCTGTTGCTGCGGCCGATCGCAAAAATGGCTGAAATAACGCAAATTCGTAGAATCGGCCGTTGGCTTGTCCCGTAAGGGTTTCATTCGTTTTTTGTTCTGATTTATTGGCAGTTATGGGTAGAAAAATCGGATCGGTCGCAAAGCGTCTCTGGACTCCTTACCGGGTAAGGGTTTAAGATAAAGGG # Right flank : CTACCTGGCGAAGAAGCAGCGATCGCCGTGTACGAGTCAACGCAACTTCGCACTCGCGAAGGCTTTTTACTAGCGCAACTATGCATAATTACCCAAAAAAGTCAATAAATAAGAAAATATTTATCCAAACTTGAGCTACTTCGCTCAAAGCCTTACCACTAAAGGATATCCTCGACTTAAATAATTATTTCAGAATATATACTGTTATTAGACAAATATGAATATCAATTTATACAATAGCCAATGTATGGACTACAAGGAATTTCACCTGTGTCGGAAGCATACTGGCAAGCTAAAATCTGGGGTTTACTCCACGATCCTGTGCTGAAAGCTTTACATAATAATACTGGCCGAGGTAGCAATAGTTTCTGGCAACAACTAGAAGTAATGCAGAACTGGGTGAACAATGGCTGGAACCCAGAACAGTCTCAGGGTAAAATCTTGGAACATATTAAGCTGGCAGACTATATCTCTTCAGCAAGCGATCGCGGTGCCATTGG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCTACTCGCTAGAGAAAATAATTGATTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 28845-29099 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJLM01000047.1 Chlorogloeopsis fritschii PCC 9212 contig00050, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 28845 36 100.0 35 .................................... TTTAATTCAGATAGCTATGAAACAAAACTAAAACG 28916 36 100.0 38 .................................... GTAAACTCCGCTTTCATTAGGAGTACTGTTATTTGACC 28990 36 100.0 38 .................................... TAAAAAAGTGCATCTACTTAAAACAGTCTCATTATACT 29064 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ====================================== ================== 4 36 100.0 37 GTTTCCATCCCCGTTAGGGGAAAAGGTTAGGGAAAG # Left flank : TTCCAGAACCCATTGCTGAAAAAAACTATAGTGGTAAATTTCAAGTTCGTATTCCTCCAGAGCTTCATCGTAAGCTAGCCATGGAAGCAGCAGAGGAAAAAGTTAGCTTAAATCGTTATGTAAGCCAAAAACTAGCTTGTTAATTTTTCTGTGATAAGTAGGTAGACATCATTAAATATAAAACTTGAATGTAGGTTGGGTTGACGCTGCTGTTACCCAACATTGATAAAGTTTGATGGGTAACGCTCACGCTCTACCCATCCTACAAATAATTATGACGATCTACTTAAAACACTGTCAGACTACACTTTTCTACGGTCTGCCAGTGTTTTATTTTGTGTACTCTGGTAACTCTTTGGTCAAGTGCTTTTACGAAGTGCAGGGTACTTCATTGTTTGAGTTACCTGCGCTAACGGAAAATTTTGATGAGTATGAAAAGTTCTTGTTAGCTGCAATGAATCCGACATCACGCGGCATCGGGTAAAGAGGGTGGGAGACTT # Right flank : GTGCGGGATCTTCTTCTTTCATCGGCGTTAAAAA # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCCCCGTTAGGGGAAAAGGTTAGGGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.30,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [48.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.01,0 Confidence: HIGH] # Array family : NA // Array 1 24366-22503 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJLM01000039.1 Chlorogloeopsis fritschii PCC 9212 contig00041, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 24365 37 100.0 36 ..................................... AAAAAACAGATTCTGCACCTGATCTTGTAACCTGAT 24292 37 100.0 34 ..................................... TTTAGAGTCAAATTGACGAATTCCAGCACTTCGA 24221 37 100.0 36 ..................................... ACGTACCCCGCTCTAAAGAGACGCGGTTTCCAAGCT 24148 37 100.0 37 ..................................... AAAAAATGCCGCCGATTCCTCCTGAAACTATCGAAAA 24074 37 100.0 34 ..................................... ATCACCGAAGGGGCGAAAAAAGCCGGTGCTGGGC 24003 37 100.0 37 ..................................... CATCGGCAAACCCTCCTTCCATTGCTTCCTTCGCAGA 23929 37 100.0 34 ..................................... CTAAAAACAGAGTGAAAGCGAGAAATCGCTTGAG 23858 37 100.0 37 ..................................... TTTACAGGGACGCTTGCAATACAGCAATTCATAATTA 23784 37 100.0 38 ..................................... TTACCAAACCGAACATTTAAGCCCTTGGAATTCATTGT 23709 37 100.0 36 ..................................... GGGGCGGAAGCTGTGGACGGAAGCAGGGCTAGAACA 23636 37 100.0 37 ..................................... GTGGGATTAACCCCGATATTTCTCGTGTACGCTCGTG 23562 37 100.0 39 ..................................... AAGCTTAACTAGTTTATTTAATAAAGAACTAACAGCATT 23486 37 100.0 37 ..................................... GTAATGACTGGCACCATTGGCTTGATAGGGATAATCA 23412 37 100.0 36 ..................................... AGAGATTTATCAAGGTTTGAATCAGGAGCAGCGTAA 23339 37 100.0 35 ..................................... TCCATTCTTTAGGCATTATATGAACTCCATAAAGT 23267 37 100.0 34 ..................................... TAGCCACTAGCAACAGCCCGCATTTCTTTAACTT 23196 37 100.0 35 ..................................... ACGTCTACAACCAATTCCGCATTTGGATTTCTAAC 23124 37 100.0 34 ..................................... TTCTTCTCTCCAGTATCCTTGATATACAGCTTCC 23053 37 100.0 37 ..................................... ATACTTTGACACAATTTTTGTCAATAACGACATATTG 22979 37 100.0 42 ..................................... AGAAACCCTTATCAGCACCTGGAAAGACTTGCTGATACAGGA 22900 37 100.0 33 ..................................... ATCCCAAAGCTTTAGATATAGTTCACCGCAATG 22830 37 100.0 34 ..................................... TTTCTCCATCAGAGAAACAGTGCCAGTACTTTTG 22759 37 100.0 38 ..................................... CGGCTCAACCGATTTACTTGAATCGATGCTTGAGGAAG 22684 37 100.0 38 ..................................... TGGCATTTATGGCAGTTTTAGAAGGAATGCAAGCAAAA 22609 37 100.0 33 ..................................... CAGCAATCCTCCTGAATTTGCATATTCTTCCCT 22539 37 97.3 0 .........T........................... | ========== ====== ====== ====== ===================================== ========================================== ================== 26 37 99.9 36 GTTGAAATTCTTCTTACTCCCTATTAGGGATTGAAAC # Left flank : GAGTCGCTGTTATACAAATATCACGTTAAGAGGGCAATTTGTCGCCTTAACTACTTTTGAGGAGGGACGTTTGAAGAGGACAAGGCGCACCTGGTGCAAGGGGACAAGGGGAGGACACTTGCGTGCGGAGGTTCCCCGGAGCTTTCGGAGTCTCCGGCTCCGCTCCGTTGAGCAAAGTGTCCGTCGACAAGGAGACAAGGAGAGTAATAAACCAACTACTGTACGGGTAACAAATGACCAATGACTATTTACTTTTCTTTACTCTTTACTGAATGCGCGGATGGGTAGGTGTTGGAAAACCAGTTTAGGAAAAAATGGCTGGATTCCTTGTCATGTAAGGAGAAAAGAGCGATCGCACTTCTCAACCATCCGCGCTCTTTACTCAGACTGGGTTTGAGCGATTTTTACCCTACTCAATCCAAATTTTTCATGCTATGATTCCCTCATCCGCGCAAATAAACCTTGAAAATCTAATATTGATTGACTTTTGGGCTGCCGCG # Right flank : TAAATCGGATGTGTCATGATTAGTTAGACCTTTATGGTTGAGGAGGGTTCGCACTACTTTGGACGGTGGGCGATCGCTCTTTTTGATAAAAAGCGTTGTGCCGTAAACACAACACTTGATCAAAGTTTTGATTTTTGTTGAATTTATATTGTTATTGCTGCTGATTTATTCGCTTTTGCAATTCAGCATCAAACTCCTCATCTGTACTGCAAAGCACGCCAGGACGAGAGCGAATTATACTTAAGTAGTGCTGGAATGCATTCTCATCATTAGGATTGCGCCGCACATATTCGCGCAATTCTTTTTCCGTCATTGATTCGTAATTTTGTCTAGTCATTCGATTATCACCTTCCCGTTTGGAAGCATTTCTATTTGTATTGTCTCTCCCACTAACATCACTATTCGGTTGGTGCGGCTATCAAACCGTACCAAGTTAATTGGTAGAAGTAGATTACTTACTCTCACGCTTCTTTGATAGAAGGATTTCAGTTGCTCCGGCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATTCTTCTTACTCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 2 38495-40939 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJLM01000039.1 Chlorogloeopsis fritschii PCC 9212 contig00041, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 38495 37 100.0 36 ..................................... AATTTCATACTGAAGATAAAGCTCTTACAGCAGTTC 38568 37 100.0 35 ..................................... GGATATTTGAATGACATCACCAGGGGAGACAAAAG 38640 37 100.0 36 ..................................... TTTCTTTGTTGCACTACGGGCTAGCAGGCTGCCATC 38713 37 100.0 41 ..................................... CCTTTGGGAATGCCCGTAAGCTCCGAGGCTTGCGGTGTCGT 38791 37 100.0 34 ..................................... ATCACCCCGCTCAACCCTGGCACGTGGGAGAGCG 38862 37 100.0 36 ..................................... AGATTTTAGGCATTTTAGGTGAGGAGGAGCAATAAA 38935 37 100.0 36 ..................................... CCAAGATGGATTGTAAATAGGAGTGGTGACTGGGGA 39008 37 100.0 34 ..................................... TCAAAAGAGAAATTTGACCAGCGCTGAGTAATGA 39079 37 100.0 38 ..................................... TTGAAGGCTCATCTTCCAGCAGAAGAAAAACACCCCTA 39154 37 100.0 35 ..................................... TGTCAACCTCCAAATCTGACCAGCTTTATAAAGAG 39226 37 100.0 35 ..................................... ATATTTAAAATTACACACCAAATCAATGAAATAGA 39298 37 100.0 44 ..................................... AGAAAATGGTGCGCCTACAAATTTACTCTTGGATTGTGGTGGAT 39379 37 100.0 34 ..................................... GGGGATCTCAACATCACACTAGTGCGTCCTTTAC 39450 37 100.0 35 ..................................... GGGAAGCCCTGGTAATAGAATTTTTAAGCCAGCGC 39522 37 100.0 38 ..................................... TGTTGCCCGTGCTGGAAGCGGCATTTTAGAAGCGGTAG 39597 37 100.0 39 ..................................... CAGTGAGAGATTTATGAGTTTTGAGTTGGATGATGGCGA 39673 37 100.0 33 ..................................... GGGTAAATTTAACATCCAATTCCAAACCATAAG 39743 37 100.0 42 ..................................... GCTATATGGCTGTACCAAATGGGAGAGGAAAAACAGAATCAG 39822 37 100.0 36 ..................................... GCTTCATTAATAATTCTTTGCTCATCTACTGGTTTC 39895 37 100.0 33 ..................................... CCGCAAGAATGGCACTTATGGGTACGAGTGGAC 39965 37 100.0 34 ..................................... TTAACAGCAAAATCTTTCCTCTGTCTACTTACCT 40036 37 100.0 37 ..................................... CCTGCTCGCTGCGCGTCATTATTGCATGGTCTGGGTG 40110 37 100.0 32 ..................................... AGGGGCGATCGCTCTATCTCTTGCCGGAGTTG 40179 37 100.0 38 ..................................... CTATAGGGAATACTAGCAAGACTTCATCTGTGTAGCTT 40254 37 100.0 34 ..................................... GGGAAGAGTGGGAAGAGATCTATCCTGAGAAATG 40325 37 100.0 34 ..................................... CTTAAACAAGCTGAGATATTTTTTGCTAGGGGTT 40396 37 100.0 35 ..................................... AACTCTCTCAAAATAGCGCGATCGCTCTTGCAGAG 40468 37 100.0 34 ..................................... TGTTGGAGTTTTAATTTTGCCTGGGCGATCGCCG 40539 37 100.0 34 ..................................... GAAGGAGCGATCGCTCCTAAACATTCAAAATCAC 40610 37 100.0 35 ..................................... ATCGGGGGTGATCGTAGGGTGATCGTGGGGTGAAG 40682 37 100.0 37 ..................................... GAGATACGGACGTTTCTATTGGCGAGAATAGTAGGAA 40756 37 100.0 35 ..................................... AAAACTCATCAACCAAGCGACAGTACCCTCCGGCA 40828 37 100.0 38 ..................................... ATCAATGTTTTTGACTTCTATTACTTGTGACTCTGTAA 40903 37 94.6 0 ................................A...A | ========== ====== ====== ====== ===================================== ============================================ ================== 34 37 99.8 36 GTTGAAATTCTAATTACTCCCTATTAGGGATTGAAAC # Left flank : GGCGGCACTTTTGTTAGGATTGCAACCAGTAATGGCTATATCTTCTGGTGCTGCTTGCTCCTCGGCAACTACTGCACCATCCCATGTCCTCACAGCACTAGGACATTCAGAAAAGTTAGCTTATGCGTCAATACGGTTTGGGATTGGAAGATTTAATACTGCTGAGGAAATTGATCGCGTTGCCCAACATACCATTGCTACAATTGGGAGTTTACGGAAGCAGGCAATGATGGTTTAACATTGTCAGGCGATCGCACCATTTTCTTTTTTAAATGCGCGGATGGGTAGGTGTTGGAAAATCAGTTCACAAAAAAAGGGCTAGATTTCTTTGACTGCAAGGAGAAAAGAGCGATCGCACTTCTGAGCCATCCGCGCTCCTTGTCCAGACTGGGTTTGGGCTATTTTCACTCTACTCAATCCAAATTTTTCATGCTATGATTGCCTCATCCGCGCAAACGAACCTTGAAAACTTAATACTGATTGGCTTTTGGGTTGCCGCT # Right flank : ACTAATCACATCCAAGCAAAGAATTTTACAAATTAATTTAGGCGATCGCTTGAGGACAAATATTGAGGATATCAGCTAGCTAAAAAATTACTTAAGTTTGTGCCAACTTTTCAATTAATAACAGCAAATGTTTCTCCAATTTGTCTAAAGCTTCCTGTGCTGAAGTTTTGTCAATATCGTGGATCAACCAATATTCCACAGCATCTAACCATTTAGGAAAACGCTCTAGAATCAGAGGTTGATGTTCCAATTCATCTAGGGCAATTATCAAATCCACAGTTTGAAAATCTTCTTCTAGAGCCTGCAAGGGCAAACGCTCGCCTTCTGGTAAAGTTACTCCCCGCTCTTTTAAAGCTTCAATTGTGTATTGAGAAATTGCCCCTATATTGTTTACACCCCTCTCCAGTGCTAAAGCGCGTGAAACAGCTTGCCATTTTAACCCCTGCTTGAGAGCCAAACAATTAAACAGATGTTCGGCGAAGCGACTGCGGTAATAATTA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATTCTAATTACTCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA //