Array 1 64983-64098 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCZB01000002.1 Lactobacillus sp. UMNPBX8 NODE_2_length_158834_cov_28.4296, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 64982 29 96.6 32 ............................C AAACGTTTGATTGTTCGGATTTTTTGGGAAAT 64921 29 100.0 33 ............................. TACAGATGACTATGATTTGCTCAAAGCCGGTGG 64859 29 100.0 32 ............................. CAGCAAGATCACCAGAAATATGTCTAAGTTCA 64798 29 100.0 32 ............................. ACGATGGGGACATTATCATTTATAAATTAACA 64737 29 100.0 32 ............................. ACAGCGATGAAAAAGCCGAGAACGTGATTCTG 64676 29 100.0 32 ............................. TAATGTTTATTGGACATTACATTAATAATTGT 64615 29 100.0 33 ............................. AACTACTATTTTGCGTTTGATAACCCGAAGTTA 64553 29 96.6 33 ..T.......................... ATAACCACAAGTCGTGCATCTGCAGTAGGGATG 64491 29 100.0 32 ............................. GGTTACGTGCTTAACGATGGCACTGTAATTAC 64430 29 96.6 32 ............................C CCTTGAACTTGTTTCCATTGTTCAAAAGTATA 64369 29 100.0 32 ............................. GATCTAAGCATTTTTCTAATTTCTTAACAATA 64308 29 96.6 32 ............................C CATCACAAAACATAGTGAAGCAGTTACACCCA 64247 29 96.6 32 .............A............... GTTTCCACATACCTTGCATTCAGCTGATTTAA 64186 29 96.6 32 .............A............... ATCTCTAGTAGCTCCTACAAAAACATCAATAT 64125 28 82.8 0 .............A.........-..TGC | ========== ====== ====== ====== ============================= ================================= ================== 15 29 97.5 32 GTATTCTCCACGTGTGTGGAGGTGATCCT # Left flank : TTCGTGAACAAATTCTGCGACTGACTTCACAAGAAGTACCACATGCTACTGCTGTCGCAGTTGATCATATGAATACTCATCAAAATGGCAAGCTCTTGATTGAAGCGACTATCTATGTTGAGAAAGACGGTCAAAAAGGCATTATTATTGGTAAGGGCGGTAAGATGCTCAAGCAGATTGGGATTAATTCACGTCAAGAGATTGAAAGATTGCTTGGTGAAAAGGTCAACTTGCGTCTTTGGGTTAAGGTCCAACATAACTGGCGTTCTGACCCTAACTTTTTAAAGCGGATAGGCTATGACAAAAAAGAACTTTAGTTGAATTACTGTTGTATAAGCGTTGTCGAAAGATGACGTCTTTTTTGTATGTTTAGGGAGACAAGAAAATTCTATTCGTTGGATGACTAATGAGACAGAAATAGATACAATAGTAATTGACAAAGTGATGAAATTTTGGGATCTATTGTTTTGTGATTGTTGTTATATTGGGATTTGTTTACT # Right flank : TATATTGGGATTCCTGAAGAAATCATGAATGTAATTATACGAGACCACAAGGAAAAATTTTAAAATCTCAGGCTTCTAAAAAGCAAAAAGAAATTTTTAATAGTTGGCAGGAAAAATGAAAGAAAATATGTAAAGACAACTAAAATAATCAACAGAGCTGCTCTTGGAATATTTATTGTTGCAGTAGTAATTTTTTATTATAGGGTTAGTGAAGTAAAATGACAGTTAGTGAAGCACAAAAAAAGACGACTAAAAAGTGGGATACCAAAAACAAAACTCGAAAACAGTATTTAAATCGGTTACTAAAAATTTTATTTTGAAAGAAGCCACCACAGAGGACCTTGAACAAATTAAAAAGTATTTTGGGCAAAGAAAACACGGAAAAGATTGATTGTGGTAGAAAACGCTGCATGAATAATTGTAATTTTTAGTAAAAAGTTTTGGAGGCACTTTTTAATGATTGATTTAAATAGTTCAGATATTATGGACGCACAAGAAGC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTGTGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 89370-87691 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCZB01000002.1 Lactobacillus sp. UMNPBX8 NODE_2_length_158834_cov_28.4296, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 89369 29 96.6 32 ............................C ATACGGGATTCCTCTTTTCCATTTATCTTTAG 89308 29 96.6 32 ............................G TAAAACCACGTGCGCCAGATAAGCCAGCTATT 89247 29 96.6 32 ............................C TAGACGTTTCTTGCATAGATCTAAAAAATCGT 89186 29 100.0 32 ............................. TAACAGGTGGTGCGTCTTATTTTTGGAAAGAA 89125 29 100.0 32 ............................. AAAATAGACGTTAACCTAGTCCCAAACATTTG 89064 29 100.0 32 ............................. AAGACAGTTATCACAAAAGCATCTTCTTATTA 89003 29 100.0 32 ............................. ATTTTGGGATTTAGCTTTACATTTTCCATATA 88942 29 100.0 32 ............................. CTTCGCCAGCATAAACGTTTAATCCTAGTCCG 88881 29 96.6 32 ............................C ATAGCGCCTTACTCGACCAGTATTGGTCAAAG 88820 29 100.0 33 ............................. CACTCATTTTTTGTTGTTGATAAATCATGAGTA 88758 29 96.6 32 ............................C TTTCTGAGTTCCACAGTGTCGTAATTATCATA 88697 29 100.0 32 ............................. GTCCTAAGCCGTTTGCTCTGGTGTCTTCTGCA 88636 29 96.6 32 ............................C ATCTGGGTCGATTCAATCGGCTTAGTAGCAGG 88575 29 100.0 32 ............................. GTTGGTGCTGTTCGTGCTGGTAAAACTTACAT 88514 29 100.0 32 ............................. ATCCGTCATGACAAGCTTATGGAAGAAATAGT 88453 29 96.6 32 ............................C ACGCCAAAGCAACAAGAGCAACCAACGCAACA 88392 29 100.0 32 ............................. TTGGGTGCTATTAATGTAAACCCAGAAAATAG 88331 29 96.6 32 ............................C ATAACGCCTTACTCGACCAGTATTGGTCAAAG 88270 29 96.6 32 ............................C CACTTTGACCTTTAGAAAGCCCTGCGGCTAAC 88209 29 96.6 32 ............................C ATACATTGCGTTGGCTCTATGAATGTCTCCAA 88148 29 96.6 32 ............................C CACAACCAGTCCAACCAGAAACTAAAAAATTT 88087 29 100.0 32 ............................. CAGCACTTAGTAGTATTATCTGACTTTGCAAG 88026 29 100.0 32 ............................. GTCCCAGCACTTAATTTTAATCAAACACTTAC 87965 29 100.0 32 ............................. ATTTATTTATGGGATTAATTTAAAGAATTGTT 87904 29 100.0 33 ............................. ATCTTTCTTTTGTTTTTTAGTTACGTGTGTGTA 87842 29 93.1 32 ...........AC................ TGTTGCCAAGCAAACGTCAGCAGATTTTCAAT 87781 29 89.7 32 ...........AC...............C AATCTAGTTTATGATACAATAAACACAGATAT 87720 29 82.8 0 ...........AC....T......T.A.. | A [87699] ========== ====== ====== ====== ============================= ================================= ================== 28 29 97.4 32 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : TGATAAACCAACGCTTGAAGTTAATAATGCAGTACCTAACAAAGAAATTATTAATTTACGAAATTTCATTATAAAAACAAACCAGATAAGATCTGATTTTGTCTCCTCTCTTAATTCACCTAAGCTATTGTAGCTCAGCAGTTTTACGAGAAAGTTACAATTAAATTTCGATTAATAACAAAAAGTTAGTATGAGTATATGTGAATATGCTTTTGATTAGGCTAGTTAAAAGCGGATGATAAAGCAGTGTCATGGCTAAAGTGTTTGGGTGAAATTCTTAATTGTGAGTAAGAAAGATTGGCAGACAAATAATATTTTTGTTTATTTGTTTAGGAGGAATCATAGCAGAATGATATTATGATTCCTCTTTTTATTTGAATATTATGTCCAGCAGATATTGTCTATTTAATAAAAATCGATATACTTGGTAGTAGGATCAAAGTGATGAAAAAATGGTGTTTGCGTATTTTCATTTGGCGCTATAAAGGGATTTGTTTACT # Right flank : GTCCTTGAGCGCACAGATAAATAGCCTGTAAACGCCGGTATGCCAGTATTTTTGATAGATGAAAAGTGTACTAATTCCTCTTTTGGTGATTGGAATTAGTACACTTTTTGCTTGTTGAGCTAGAGGGTCGAGTGGATAACGTGCTGGATTTTTAGGTTGTATAGATAAGTGTCCGTTTTGGGGAGTTGAGTTGGTTAAGTTGATGAGAGAAGCAGTAATGGTTGATATGACGATAAGATAATGGATGTTAATTATTAAAGATATTTATAATCAAAGATTTAATCAATTTTTGTAAAATGCTTTTATGCTAGATTTATATCGCAATAATCAAATGGAAGGATTAGAAATATGGTTGACTATATTGCAAAAATTAAACCAATAAATGCGGATAAAATTGAAACACAGGCGCATGGAATAGCAACATTCAGTGAAAATGGTAATAGCCTTCATATTCATGTGGAAATGTTTGATACGCCTGCCAATATTAAACATTGGGAACA # Questionable array : NO Score: 5.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.77, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 92491-92097 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCZB01000002.1 Lactobacillus sp. UMNPBX8 NODE_2_length_158834_cov_28.4296, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 92490 28 89.3 33 ............TA.........C.... CAGTTTAGGTACCATTTTTTGACGATCAAAATC 92429 28 100.0 34 ............................ TGACAAGGTTGACCAAGCCGTTAAGACCATGCAA 92367 28 100.0 33 ............................ TTAAAATAATTAAGGAGGGAACTCCAAATATCG 92306 28 100.0 33 ............................ CAATTTCTTCCTTCGACATGTCCTTAAGAGCAT 92245 28 89.3 33 ...........ACA.............. TGACAGCTCTGCTGTAGTGATCGAATCAGACAA 92184 28 89.3 32 ...........ACA.............. TCCGACGGGGTACCCCGCGGCTGTCCATCATC 92124 28 71.4 0 ...........ACA........CT.AAT | ========== ====== ====== ====== ============================ ================================== ================== 7 28 91.3 33 GTATTCTCCACGAGTGTGGAGGTGATCC # Left flank : CGGTTTACACCCAACACCAGAAGATGCAAGTAATGATTGTTACTCAGCACCCACAGCATATTATCGATGGAATTCAGAATCGAATGCATCGTGGAATCACTATTTTGCACGATGCTGAAGGTGCATATAGTCATATTGAAAAGACAGTTTTGATTACCATTATTGATCGATATGATATGTATGATATTCGCCAAATCGTGCAAGGAGCAGATCCGTATGCTTTCATGAGTGTTAGTGAAGTTGAAAAAGTATATGGCCGCTTCAAGGAGCAAGAAATCGTTTAATGGATAGCCCTTAAACCTTGATATATAAGGATTTATAAATGAAATTTGAATCCTAGGGGCACTTTGGGAGCAAAACTATTCAAAAAGAAGCAGAAATGCTTCTTTTTTATTTGGAGTGGCTTTTTGTAATTATGGCTTTATTATTGGTCTTTGTTAAAAGTGATTAAAAATGATATTATTTCGATTGAGCGATGCTGATATATTGTGGATCATTTA # Right flank : AGCTGCTCTGAAAAATATGTTCTATAGAGTGACTGTTTTTGTATATTATTTAAAAATATTGTTGATGGTGCACGGAGATTGCGTTCACTTATATAGTGAAAAGATGCTAAGAAATCTAAAATAGAATCGAGATGAATTGGTAATCTGGTAATCGTAAGAAGGACTTAGCTACTAATCGTTGTATTCAATTTTGATAACAAATTAGTTAAAGAGCAAAAAATATGAAGAATTATAAATTTAATAAGTTTATGTAAAAACAGTGTCATTAAGTTAGGCTATTGATTTTGGTGAAAAAACAATTAAAGCATCATTTGGCTTTAGACGGCCAGATTGATGCCTTTTTGGCATATTTTTCTAAATATCATTCGCGTTACACGTAAAAGCGTGTGTTGTATATAGTGAAAGGAGGCTAAGAGAATCGGAGCTAAGAGGTGACAAATATGCCGAAAGCCCAATTGCAAAGTGCAAAATAAAAAACCACAAATCAAAGTTTACTTCAA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:0.56, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGAGTGTGGAGGTGATCC # Alternate repeat : GTATTCTCCACACATGTGGAGGTGATCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 4 123454-122141 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCZB01000002.1 Lactobacillus sp. UMNPBX8 NODE_2_length_158834_cov_28.4296, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 123453 29 100.0 32 ............................. AAAAATACCTAATTCGCTGGCAATTTGCGTGA 123392 29 96.6 32 ............................C AAAAAGACTGGTCGAATTGAGCCGTCTAAAAA 123331 29 96.6 32 ............................C AATAGCTATCTTTTTATCAGAGTTAAGATCTA 123270 29 100.0 33 ............................. CACCTTTCATTTGTTCTGCAGTTACTTGAATTG 123208 29 100.0 33 ............................. AATCAATCTTTTATCATCGGATAAATCTGCTAA 123146 29 100.0 33 ............................. ACGTTGGTATGGTCGCTACATGGAAGACAGCTA 123084 29 96.6 32 ............................C GGTCGAATTCGTGGCATGACTGATGAACTTGA 123023 29 100.0 32 ............................. AGTGACTTGCCATTTGATTAAAAGAAAGAGTG 122962 29 100.0 32 ............................. TAGGTGCCGCACTACTTATGGTTGGTGGTGCT 122901 29 100.0 32 ............................. AATTCATTTTGTGCCTGCTTTCTATCGGCAAA 122840 29 100.0 32 ............................. AATCTGTTGAAGAATAGCAATGCTTTATTTGA 122779 29 100.0 32 ............................. AATATTTTACAAAGATGGGGTTCTGATTGGTG 122718 29 96.6 32 ............................C TAGTACTGCTTTTATAAATAGAAAACTGAATG 122657 29 100.0 32 ............................. AAAAATGTGATTCTTGCTACAGGATCAGCGTG 122596 29 100.0 33 ............................. CACGATTAACAAGGCTATGGGCGATGGTGGGGT 122534 29 100.0 32 ............................. AGTCGTTTGATCAGTAACACCGTCACTGTTGA 122473 29 100.0 32 ............................. ATTGAAGAAACACAAATTGCAGATAAAGCAGA 122412 29 100.0 32 ............................. GCGCCTAAGTTTTGACCACGAAATACGTTGTT 122351 29 96.6 32 ............................C TCATGAGTTTCACCATATCGATTAATTAAGCG 122290 29 100.0 32 ............................. GTTGGTGCATTAATGGAAGATGCATATTTAGA 122229 29 96.6 32 ............................C AAGGCTGTCAATATCACCGTTCCAACGTGGCT 122168 28 86.2 0 ..............C.......C-...T. | ========== ====== ====== ====== ============================= ================================= ================== 22 29 98.4 32 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : AAAGCACTATTGAGTGATAAGAAGTTTGATCAAGCTGTTTTTTATCTGATGGATAATTTGAATTTATTAAAACAATCATTAAGCGCTGATATGGATTATAGTCAATTATTTGAAAAACTGCGAAAGTTAAATAAAAAATTAAAGGTATTTCTAAGCCTTTTCATTATATGCCTAAAAAAACACGTACTATCAATCAGGGAAGGAGAGCAATTAATGCCATAATTAGCAATATTATTGGTGCTGATTGTAAAAAATTACAAAATTTGCAAGATGAACAAATCTTTCAGATGTATCTTGAAGCTAAGCTGCTAAATCAAAATTGGATGAAGCTTAACGATGATCGGGGAGTTAGTCAACGAATCAGAAAAAGAGAATCTTATTTTATTCAATTAACTTTGAATATCTAATTACATAAATTTTGAAAAGTGAGTCTTCTTAAAAGTGATTGAAAATGTTATGATTTGAATTAAGGATCATTGATATAGCGGGATTTGTTTAGT # Right flank : ACTCTTGTATCAAGGGATTTCTCTAAAAATAAAAAAATAGATAATCGATTAACTTAATCATTCTAAAAATCGTGCTTGATCTAACTTCCAAACATCGTTATACTAAAGAAAGTGTTGCATCGAGAATCCTTATTCACGATGCCCGATCAACAGAAATTTTAGCAAACCTCTTAAAGGCGACTCGCTTTTAGGAGGTTTTGTTTTTTTATTGCCAAACAAAAAAGATGACAAAAATGCTGTAATCATTCACAATAGGGAACAACAAATTGTTGAATTAGAGGATTTAATTATGAAAACAGTAAAGAATATTATTATCGGCTTTGGTAAAGGCGGCAAAACGCTAGCTAAATTTTTAGCGAAAAAGGGCGAAGAAGTCCTAGTCATTGAAAAATCTAATCAAATGTATGGTGGTACTTGCATTAATATTGCTTGTCTGCCATCTAAACGCTTAATTATCGAAGCGGGTAATGGCGTGGATTTCGTAGATGCAGTTAATGGTA # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //