Array 1 77710-76303 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVCL01000015.1 Cronobacter sakazakii strain MOD1_788569 788569A_contig_15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 77709 28 100.0 32 ............................ TTAAGCAGTCATCTCGCAAGGCTCGCGGAAGA 77649 28 100.0 32 ............................ ACGTGGCTTCAGAACAGCCAGGACAGGCCGAA 77589 28 100.0 32 ............................ ATGCCGGGAAGCGTGCCATTCGCGCGTTGTGG 77529 28 100.0 32 ............................ TCCAATCGCGGCCAGACCAACGGCGGCACCGG 77469 28 100.0 32 ............................ TGCTGCCATCCATGGAGCAGTGGGCGCGCGAC 77409 28 100.0 32 ............................ TGGCACGTAAAACGCGCTGTGCGAATTACAGC 77349 28 100.0 32 ............................ AGCGCGCGCGCATCATCATTCGCCCTATTACG 77289 28 100.0 32 ............................ GCGCCAGTTTTGTTCGCACTGCCTGCGCTGTC 77229 28 100.0 32 ............................ AATACGCTGTCAGGGAGGCCGATAAGGGCAAT 77169 28 100.0 32 ............................ GACGTGGCCGCCTCCGCTGCGGTTGAATACGA 77109 28 100.0 32 ............................ AGAGAACGCCGAGACGTCAAGGCCGCTGTTTT 77049 28 100.0 32 ............................ AACGTGCGCACTCGACGTCGCCCTCCGTTCCC 76989 28 100.0 32 ............................ GCGGAGACAACGTTTTTTACAGCGTGCTGGAG 76929 28 100.0 32 ............................ CGAATCTACCCGAAATGACGCTGAATACGCCC 76869 28 100.0 32 ............................ GAACTCGCCGCACGCGCTGGTTTATCAACTGC 76809 28 100.0 32 ............................ GTTCGGGTACGGGTCGTCAGCGACCCAGTACG 76749 28 100.0 32 ............................ GTCACGCAGATAGATCACCGTTCTGGAACCAA 76689 28 100.0 32 ............................ TGGTAACCGCGAGCGCTAATTTGCCGTTCGTT 76629 28 100.0 32 ............................ ATCGAACACTTTGAGACGGGCCGCGCCATCTT 76569 28 96.4 32 ...................T........ GCAAATGCCACCATCAATACCACGAAGTTTAT 76509 28 100.0 32 ............................ TGGACTGGTACCGTTATCGCGAACCACCTCTA 76449 28 100.0 32 ............................ GCTGCCAGCCGTCTCGCGATTCTCTCAACAAC 76389 28 100.0 32 ............................ TCCACGCTGCCAGCCCGCAACCGATACACAGG 76329 27 89.3 0 .....................CG-.... | ========== ====== ====== ====== ============================ ================================ ================== 24 28 99.4 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGAAAAACAAAAACCGCCGTCAGGTCGGCCATGTCTTCCGCTTCTGATTCACTGAGCGCAAAACTGTTAGTGGAAAAGGCCAACAGACAGCCCAGAAACATTAGCCTGACTACTTTTCTCATCACGTCTACCACTCGCCAACCAATACCCAACGATAGCACATTTCGTTCAGGCGCGACGAGGAGATTTCTTGCCTTTAACGCGCGGATAACTGCCTGTTTCAGGCGATGTTGTACGAACATCATCGACCAGAAAGCAGCAGAAAAATCTCTCTATACGATACGGCAATCGCGCACGTTAACGCACCGAAGAGCAAACCACTGAACGAATGAAACGATAAAAGTGATGGGCGTTGCGCCTGGGCGTCTAAACCCTTTTTTATGCTCCGCTTGTAAGGCGTTGATTTTTAATGCGTGCAGTTGTGGTGATAAAAAAGGGTTTCAGGCGTTAAAAAGCAAAAATTTGTTTTCAATTCAGGCATTCCGGTAAGATTCGCTCTT # Right flank : ATCACAGCGAATTCCCTTGCCGTCACACTTGACCTTCCCGCAAGGGGAGGGTTTAAGCTCAACGGGTGCACGTTGACGATAAGGACGGGAAGATGCAACGCCGAGAGTTTATCAAGTACACCGCCGCGCTGGGGGCGCTCAGCGCGCTGCCGACATGGAGCCGGGCCGCGTTTGCCGCAGAGCAACCCGCGCTGCCCATCCCCGCGCTGCTGACGCCGGACGCCCGCAGCAGCATTCAGCTTACGGTTCAGGCGGGTAAAACCGCGTTTGCCGGTAAAAATGTCACGACCTGGGGATATAACGGCTCGCTGCTGGGCCCGGCGATTAAGCTGCGCCAGGGCACGCCGGTCAATATCAATATCCGCAATAACCTCGCCGAAGAGACCACGGTGCACTGGCACGGTCTGGAAGTGCCGGGCGCGGTGGACGGCGGGCCGCAGGGCATTATCGCGCCGGGGCAGACGCGCAGCGTAAGCTTCACGCCTGAGCAGCGCGCCGCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 244185-245189 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVCL01000006.1 Cronobacter sakazakii strain MOD1_788569 788569A_contig_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 244185 29 100.0 32 ............................. ATAACTGGGGGACGCAATGAGCACCGCCAAAA 244246 29 100.0 32 ............................. CGCTCTCACCGTTTGCGTTTAACGACCAGACT 244307 29 100.0 32 ............................. CGCACCAGCTGGTTGAGTCCTTCCGGGCTGAA 244368 29 100.0 32 ............................. GCATCGCGCCAGGGAGAACGCGTAATTTAAAA 244429 29 100.0 32 ............................. GCGTTAAAAGCATCAATGTGCCTGAAACTGGC 244490 29 100.0 32 ............................. CGACACAGCGATAACAGAGCCGACAACAACGG 244551 29 100.0 32 ............................. TGTAACCGCAGTATTAACTCAACTGGCGCGCA 244612 29 100.0 32 ............................. ATCATGTATTCGGCGTTAATGCTGGTTCCTTC 244673 29 100.0 32 ............................. GGTATCCAGCCGAGCGTGCAGCAGACGGCGGA 244734 29 100.0 32 ............................. CCACAATTCCCAGCAGGCTCGGAACGAAGGGT 244795 29 96.6 32 ..................A.......... TACCGCCGTAACGCCGTGGCGCGTGCGGCAAT 244856 29 100.0 32 ............................. TACAGCCAGACTCATAACATGCTCGTCATCGC 244917 29 100.0 32 ............................. TTTTTCTGCTATATCGCGCTGCTGATCGTTAG 244978 29 100.0 32 ............................. ATTCAACACAATCCGCCCCATCCGGGGCAAAT 245039 29 100.0 32 ............................. ATTATTGGGAGACTCCTGCACTTATTACTGCA 245100 29 96.6 32 .....T....................... CGCCTCAAAATTGGCGTGGGCCTTTTGCTGGT 245161 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.6 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ATGAAAGCTTTAAATGGATGATGGCAAACAACATCGCGTTTATCGTCGCCAATATCAATATCAACTACCGTCGGCCCGCCGTGCTTGGCGATCTGCTGACTGTGACTAGCCAGGTGAAGCAGCTTAACGGTAAAAGTGGGGTCTTAAGCCAGGTCATTACGCTTGAGCCGGAAGGCGAAGTGGTCGCCGATGCGCTGATCACCTTTGTCTGTATCGATCTGAAAACGCAGAAAGCCTTACCGATTGAGGGCGAGCTGCGTGAAAAACTGGAAAAAATCACAGGGTAAATTCTGCAATAGTGGCGCTTGTGCTGGCAATCATGGATTTATCACCGCACAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCAAAATCAATAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTGTAAAAATGTTGGTAGGATGTGGAAGGCGAAAAAATGCCATTCAGTACAGAGGGTTACCGTTAGT # Right flank : GAACGCTGAACTGGCGAACACGCTGCAAAATCTCCGTTCCCCGCCATCCGTAATAAACCGCCCAGGCTCTTCGCGCCTGTCACTCGCCGCCCCCTTTCCCGCCACAATCTTCAGCAACGTTTATACTTCAAAGCCCTTGTTAAATTTTGAACACTGCGCAACGAAGGAGAGGCTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGCTGCATGCGCACCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGGCTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGATATGCGCCATCCGCGCCGCCGTTTACCACTCTTTTTCCGGGCGCTGAATAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATTAAAGCGCTCGGCTTTAAGCCGGAGGACATCCGACACATTGTGCTGACGCATCTGGATTTCGATCATGCGGG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 271642-272585 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVCL01000006.1 Cronobacter sakazakii strain MOD1_788569 788569A_contig_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 271642 29 100.0 32 ............................. TGATCAACATCTCCGGCGTGGCGTTAATAATC 271703 29 100.0 32 ............................. TGCAGGCCACTGGATCACAGCCTTGAAACGGG 271764 29 100.0 32 ............................. CTCGCGCTGGGCGAGGCTGTGCAGGTCGTGGG 271825 29 100.0 32 ............................. GCCGACGGGTCGCGCCCTTTGTTTTTCTTCCC 271886 29 100.0 32 ............................. CAGGCGCTGGACTATGACGCGAAGCGGAGGGC 271947 29 100.0 32 ............................. TTTTTCGGCAGCCAGCACGCGGCCATGACCAG 272008 29 96.6 32 ............................C TCTTAAACTGGCTCACAAATCAAAAAATGAGC 272069 29 100.0 32 ............................. ATATCGGCGGGGTGCCAGTCGATAAACTTCTG 272130 29 100.0 32 ............................. CACGAGGACGAATACGTCTGTTACGTGTACGT 272191 29 100.0 32 ............................. ATATCGGCGGGGTGCCAGTCGATAAACTTCTG 272252 29 100.0 32 ............................. CAGAGGGAATTGTTGCCGTACGCGCAGAACGC 272313 29 100.0 32 ............................. CCGCCGAACTGTACGACCCGTCGAAATATACC 272374 29 100.0 32 ............................. TATGGTTTGTTTTTAACCCCTTCTTCCTGACG 272435 29 100.0 32 ............................. CCGTCACCCTTAGCTCCAAAATCTTTGACGCT 272496 29 100.0 32 ............................. AACATAGAGAACGCGGCACAGAAGAGTTTCCG 272557 29 96.6 0 ........G.................... | ========== ====== ====== ====== ============================= ================================ ================== 16 29 99.6 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACCGTGCTCGCCGCCGGTGAAATCGAACCGCCGCAACCCGCGGCGGACATGCTGCCGCCCGCGATACCGCAAGCCGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGCATGATGGTCGTCGTGACGGAAAACGTCCCGCCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTCGGCGACGTATCGCGTCGGGTGCGTGAGATGATCTGGCATCAGATAAATGAGTTAGCGGAGGAGGGCAATGTGGTGATGGCCTGGGCCACCAATAATGAATCCGGTTTCGATTTCCAGACGTTCGGCGTTAACCGTCGTATTCCGGTGGATTTAGACGGCCTGCGCCTTGTCTCGTTTTTACCGATTGAAAATCAGTAGGTTATTCGCTCTTTAACAATGCGAGATTGTGAACCAAACGTTGGTAGGATGTTGTTGCACGAAAAAGTGTAATAGATACAAGTATATAGTTTTAGA # Right flank : GTTGTTGAGTAGAATCGCCTGCCTTGGTGGGTGCGCTTCGCTTACCCAGCCTACATATAAACTGGCGGGCCTGCCCTTAACCGCCCCACAAAACTTTTCCCGCACCTGCTCTCGATTGCGCAATAAACCGGCATACGGCGCGCGTTGGGTTGCAATCGCCGGGGGCAACAGACATAATGCGCCCTGCGCGTTTAACGACGCTCTCAATGGGGGCCCTGTTGGTTCTCCCGCAACGCTACTCTGTTTACCAGGTCAGGTCCGGAAGGAAGCAGCCAAGGCAGATGACGTGTGTGCCGGGATGTAGCTGGCAGGGCCCCCACCCATTTCTGCCCTAAGTCCTTTTTTCAGCTTTATCCTGGTGATGAAACATCATAAGAGGTGTATCAACTCATCCTGGATACGAGCGGCCTTTGGCTGCTAATATCAGGTGCGGTTATTTACTATAACGTTTATGTTTTCATTTATGAGCACTCAGAAATGGATAATTCACTCAGGCGATT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //