Array 1 5516-5684 **** Predicted by CRISPRDetect 2.4 *** >NZ_CNBE01000137.1 Mycobacterium tuberculosis strain Bir 53, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ==================================================== ================== 5516 23 91.3 48 TC..................... TCGGGGAGCCGATCAGCGACCACCGCACCCTGTCAGTCGTCAGACCCA 5587 23 100.0 52 ....................... GCAAAAACCGTGTTGCACTGCAACCCGGAATTCTTGCACGTCGTCAGACCCA 5662 23 100.0 0 ....................... | ========== ====== ====== ====== ======================= ==================================================== ================== 3 23 97.1 50 AAACCCCGAGAGGGGACGGAAAC # Left flank : CCTTTGTCACCGACGCCTACGCTCGCAGGATCCTGGGCTGGCGGGTCGCTTCCACGATGGCCACCTCCATGGTCCTCGACGCGATCGAGCAAGCCATCTGGACCCGCCAACAAGAAAGCGTACTCGACCTGAAAGACGTTATCCACCATACGGATAGGGGATCTCAGTACACATCGATCCGGTTCAGCGAGCGGCTCGCCGAGGCAGGCATCCAACCGTCGGTCGGAGCGGTCGGAAGCTCCTATGACAATGCACTAGCCGAGACGATCAACGGCCTATACAAGACCGAGCTGATCAAACCCGGCAAGCCCTGGCGGTCCATCGAGGATGTCGAGTTGGCCACCGCGCGCTGGGTCGACTGGTTCAACCATCGCCGCCTCTACCAGTACTGCGGCGACGTCCCGCCGGTCGAACTCGAGGCTGCCTACTACGCTCAACGCCAGAGACCAGCCGCCGGCTGAGGTCTCAGATCAGAGAGTCTCCGGACTCACCGGGGCGGT # Right flank : CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAACCCTTCGACGCCGGATTCGTGATCTCTTCCCGCGGATAGGTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAACGCACGCAAGCGCTAACTGGCTTGGCGCTGATCCTGGTGGTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAACGCACACCTCAGTAGCACGTCATACGCCGACCAATCATCAGGTC # Questionable array : NO Score: 4.80 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:-0.39, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AAACCCCGAGAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,0] Score: 0.37/0.37 # Reference repeat match prediction: F [matched AATCCCCGAAAGGGGACGGAAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [33.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 6031-6753 **** Predicted by CRISPRDetect 2.4 *** >NZ_CNBE01000137.1 Mycobacterium tuberculosis strain Bir 53, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================================= ======================================== ================== 6031 39 100.0 35 ....................................... CGCAAGCGCTAACTGGCTTGGCGCTGATCCTGGTG 6105 39 100.0 37 ....................................... CACCTCAGTAGCACGTCATACGCCGACCAATCATCAG 6181 39 100.0 39 ....................................... TAGAGGGTCGCCGGCTCTGGATCACGCTCCCCTAGTCGT 6259 39 100.0 37 ....................................... CCAGCTCAGCATCGCTGATGCGGTCCAGCTCGTCCGT 6335 39 100.0 40 ....................................... CCACATCGATTTCCTTGACCTCGCCAGGAGAGAAGATCAC 6414 39 92.3 37 .........................A..........T.G TCGACGATCGCGTCGATGTCGATGTCCCAATCGTCGA 6490 39 100.0 36 ....................................... CGGCAACAATCGCGCCGGCCCGCGCGGATGACTCCG 6565 39 100.0 33 ....................................... CGCAAGCGCCGTGCTTCCAGTGATCGCCTTCTA 6637 39 100.0 39 ....................................... TAGAGGGTCGCCGGCTCTGGATCACGCTCCCCTAGTCGT 6715 39 100.0 0 ....................................... | ========== ====== ====== ====== ======================================= ======================================== ================== 10 39 99.2 37 GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAACGCA # Left flank : ACGGAAACTCGGGGAGCCGATCAGCGACCACCGCACCCTGTCAGTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAACGCAAAAACCGTGTTGCACTGCAACCCGGAATTCTTGCACGTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAACCCTTCGACGCCGGATTCGTGATCTCTTCCCGCGGATAG # Right flank : AAAAACCGTGTTGCACTGCAACCCGGAATTCTTGCACGTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAACGCAAAAACCGTGTTGCACTGCAACCCGGAATTCTTGCACGTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAACGCACGGGGAGCCGATCAGCGACCACCGCACCCTGTCAGTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAACGCACGCACGCAGAATCGCACCGGGTGCGGGAGGTGCAGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAACGCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [13,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.20,-9.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 3 7293-7030 **** Predicted by CRISPRDetect 2.4 *** >NZ_CNBE01000137.1 Mycobacterium tuberculosis strain Bir 53, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================================= ===================================== ================== 7292 39 100.0 37 ....................................... TGCTGCACCTCCCGCACCCGGTGCGATTCTGCGTGCG 7216 39 100.0 34 ....................................... TGACAGGGTGCGGTGGTCGCTGATCGGCTCCCCG 7143 39 100.0 36 ....................................... GTGCAAGAATTCCGGGTTGCAGTGCAACACGGTTTT 7068 39 100.0 0 ....................................... | ========== ====== ====== ====== ======================================= ===================================== ================== 4 39 100.0 36 TGCGTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC # Left flank : GCGTGGCTGTGGTGTGGCGGGCGAT # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGACGTGCAAGAATTCCGGGTTGCAGTGCAACACGGTTTTTGCGTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGACACGACTAGGGGAGCGTGATCCAGAGCCGGCGACCCTCTATGCGTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGACTAGAAGGCGATCACTGGAAGCACGGCGCTTGCGTGCGTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGACCGGAGTCATCCGCGCGGGCCGGCGCGATTGTTGCC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGCGTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [13,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.20,-9.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-13.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA // Array 1 691-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_CNBE01000150.1 Mycobacterium tuberculosis strain Bir 53, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================ ================== 690 29 100.0 45 ............................. CTTCAGCACCACCATCATCCGGCGCCTCAGCTCAGCATGTCGTCA 616 29 100.0 45 ............................. CCTTCGACGCCGGATTCGTGATCTCTTCCCGCGGATAGGTCGTCA 542 29 100.0 44 ............................. TGCCCCGGCGTTTAGCGATCACAACACCAACTAATGGTCGTCAG 469 29 100.0 44 ............................. TTAAAACCGTGTTGCACTGCAACCCGGAATTCTTGCACGTCGTC 396 29 86.2 44 AGGA......................... TTTTTGCCTCATGCTTGGGCGACAGCTTTTGACCAAGTCGTCAG 323 29 100.0 48 ............................. CCGACGATGGCCAGTAAATCGGCGTGGGTAACCGATCCGGGTCGTCAG 246 29 100.0 43 ............................. CCTCATGGTGGGACATGGACGAGCGCGACTATCGGGGTCGTCG 174 29 100.0 45 ............................. TAGTACGCCATCTGTGCCTCATACAGGTCCAGTGCCCTGTCGTCA 100 29 100.0 42 ............................. CTGACGGCACGGAGCTTTCCGGCTTCTATCAGGTAGTCGTCA 29 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================================ ================== 10 29 98.6 45 GACCCAAAACCCCGAGAGGGGACGGAAAC # Left flank : ACCCCGAGAGGGGACGGAAACTCGGGGAGCCGATCAGCGACCACCGCACCCTGTCAGTCGTC # Right flank : C # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GACCCAAAACCCCGAGAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.74 Confidence: LOW] # Array family : NA // Array 1 10501-11568 **** Predicted by CRISPRDetect 2.4 *** >NZ_CNBE01000016.1 Mycobacterium tuberculosis strain Bir 53, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================================= ====================================== ================== 10501 39 100.0 36 ....................................... AAAACCGTGTTGCACTGCAACCCGGAATTCTTGCAC 10576 39 100.0 36 ....................................... CGGCAACAATCGCGCCGGCCCGCGCGGATGACTCCG 10651 39 100.0 37 ....................................... TATCGCCCGCCACACCACAGCCACGCTACTGCTCCAT 10727 39 97.4 22 ...C................................... GGAATAACGCGCAGTGAATTTC Deletion [10788] 10788 39 94.9 36 .CG.................................... GAGGAGAGCGAGTACTCGGGGCTGCCGTCTGCGCTG A [10792] 10864 39 100.0 36 ....................................... AAAACCGTGTTGCACTGCAACCCGGAATTCTTGCAC 10939 39 100.0 33 ....................................... CCGGAATCCCATGTGCTGACAGCGGATTCGCAT 11011 39 100.0 36 ....................................... GCAGCACCACCATCATCCGGCGCCTCAGCTCAGCAT 11086 39 97.4 34 ......................................G TGAAACCGCCCCCAGCCTCGCCGGGGCCGCCTAG 11159 39 100.0 36 ....................................... CTCGACGCCGGATTCGTGATCTCTTCCCGCGGATAG 11234 39 97.4 35 ......................................G GTTCGCGTCAGACAGGTTCGCGTCGATCAAGTCCG 11308 39 100.0 32 ....................................... GGCCTCATGCTTGGGCGACAGCTTTTGACCAA 11379 39 100.0 38 ....................................... CCCGCCGATGACAGCTATGTCCGAGTGACATCCTCCCA 11456 39 89.7 35 ..................A.................TTG AACCGCCCTTCGCGCGGTGTTTCGGCCGTGCCCGA 11530 39 100.0 0 ....................................... | ========== ====== ====== ====== ======================================= ====================================== ================== 15 39 98.5 34 GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAACGCA # Left flank : TTCAGTACGCCCTCGACTTGCAACTGCAAAGCCTCGTGCGTGTTATCGAAGCCGGGCACCCGTCGCGGCTCGTCGATATCGATATCACCTCCGAGCCATCCGGAGCCTAAATGCCCACTCGCAGCCGTGAGGAGTACTTCAATCTCCCGCTCAAAGTGGACGAGTCCAGCGGCACTATAGGCAAGATGTTCGTCCTCGTAATATACGACATCAGCGACAACCGGCGGCGGGCTTCACTTGCGAAGATCCTGGCCGGGTTTGGCTATCGCGTCCAAGAGTCCGCATTCGAAGCGATGCTGACGAAGGGCCAGCTCGCGAAACTAGTTGCACGTATCGACCGCTTCGCCATCGACTGCGACAACATCCGGATCTATAAGATAAGAGGTGTTGCGGCAGTTACGTTCTACGGAAGGGGACGGCTTGTCAGCGCAGAGGAGTTTGTGTTCTTTTGACATCATCAGCAGGCATTGTTACCACACGCTGGACGAATTGTCCATAGA # Right flank : ACGACGACTGGGTCGCCACCGCGTCTGTTGACCGGCATTCAGGATGAGCATGATGGCGGCGTTGACGGTGAGGACGTTTGGTCATGAAATGACCCCGCCGGGAGATGTCCGGCGGGGTCGGTGGTGTTCGGGGGGTCGGTGTGGTGTTCAGTCTGCCGTGACTTCGGCGATGGCGGTGCGGGTGGTGGATTCGTCGACGATGGCCTTGTCGGCGGCGAAGGCGGCGACGAGGGCTTGCAGGGCGAGGTTGTTGACCGCGCGGGGGTAGCCCCGGCTGGTCTGGTGGATCAACCCGATGGCGTCGTCGGAGAACAGGGCATCGTCGCGTCCGGCTAGCTTGAGGTGGTGGCGTAGGTAGCTGCCGGTGTTGGTGTCGGTCATGGGCGGCATGGCATATCGGAGTCCGATGCGCTGGTCAAGCGCGGCGAGCACGCCGAGTTTCATCCGCCGCCGCAGGGTGGGTTGGCCGATGAGCAGGCAGGCGAACGGGCTTGACGAGT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAACGCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [13,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.20,-9.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [5-5] Score: 0/0.41 # AT richness analysis in flanks prediction: F [55.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA //