Array 1 14142-11364 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMLR01000005.1 Salmonella enterica subsp. enterica serovar Oslo strain LAT9 SosM_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 14141 29 100.0 32 ............................. CAGCGCACTACCCGGCAATAAATCTCCGAATA 14080 29 100.0 32 ............................. GCGGTATTCACGGATGTATCAGCGAGCAGATC 14019 29 100.0 32 ............................. GCCCGCCAATTTGGCAGCGCGATGACGCAAAT 13958 29 100.0 32 ............................. CTGATATCGCCTCGTTAATTTCTTTTACAGCT 13897 29 100.0 32 ............................. AATTAAATGAAATACGACAGCGCACGTTAAAA 13836 29 96.6 32 ............................A TCCAGTCGGCGATGTTAAACAGTGACGCGACC 13775 29 100.0 32 ............................. GTTGCCGGGATATGGCGGAGAATTATATATCG 13714 29 100.0 32 ............................. CAGAAAGCGGTCATCACCTCCGTAATTGGTGT 13653 29 100.0 32 ............................. AAATCGACCGAAAATTCGGACAGTACAACGTC 13592 29 96.6 32 .................C........... TCCAGTGTTTATTTTAGACTCGCAACAATTAA 13531 29 100.0 32 ............................. GCGATTCCGTTGTCGGCCAGCTTCAGGCGGTT 13470 29 100.0 32 ............................. CTCCAGGCGGCCCCGACATATAGCGCTCATGC 13409 29 100.0 32 ............................. CAGGTCACTAAAATTTGTAGGGTTATCCACAG 13348 29 100.0 32 ............................. GCCTTAGAAGATGACGACCTGATTTCAATTGA 13287 29 100.0 32 ............................. TAAATTTTCAAAACCAGCTTGTGATGGTTATA 13226 29 100.0 32 ............................. GGGATTTTGGATCGCCCGGTGATAGAGAATTA 13165 29 100.0 32 ............................. CGGTTCCATTGACCCGCGCTGCGGGCTGTCCT 13104 29 100.0 32 ............................. CACGTTTCCTGCCTAATAAATGGATGATGTCG 13043 29 100.0 32 ............................. GACAGTGCCCTGCTGTTGGGCGGTGTCAGCAC 12982 29 100.0 32 ............................. CGTGGAACTTTATCCGCACAGATTTCCTGCGC 12921 29 100.0 32 ............................. GACGCAGGGGTTACTGATGAACTGAAAAAGCA 12860 29 100.0 32 ............................. CAGCGGGAGGAAATTAACAGCCTGAAATCAGG 12799 29 100.0 32 ............................. GGAAACGCATATGAGCACACAAACAACCGGCA 12738 29 100.0 32 ............................. TACCGTTAACCAGCTCAATAAAAACCAGGTGA 12677 29 100.0 33 ............................. GTTGCCAGCGCAATTCCGTGAACACCCACAATT 12615 29 100.0 32 ............................. AGCAACATCGACAAACAGGCGCTACGTGAAAC 12554 29 96.6 32 C............................ TTCGCGCCAGATTTTAGCGAGGTGATACAGGT 12493 29 100.0 32 ............................. GATCAATATCCGCCACCTCTTTACCATCAACA 12432 29 100.0 32 ............................. GACGATGTTACCGGTGCTGATGTGCTGGATAC 12371 29 100.0 32 ............................. TATCACGGATAGGATATAAACACGGTTAAAAC 12310 29 96.6 32 ............................C GGATGAAAGAAGGGCAGGAAAAAATCTACTAC 12249 29 100.0 32 ............................. CAAACGCCAACGCAACCACAACCCGCCATTAC 12188 29 100.0 32 ............................. TCGCTGTTAACCGCTCTCGCACTGCGTCAGGC 12127 29 100.0 32 ............................. CAATTGACGAGCCTTCCATATAGGACGCCCGC 12066 29 100.0 32 ............................. GCATATGGAGAATACATTTACTCAGTGAATAT 12005 29 100.0 32 ............................. AATATTTCTGGCGCCAGGTGCATTCCGTCGCA 11944 29 100.0 32 ............................. TTCTCTGGAATTATATTTTGTTCCGCACGTTC 11883 29 96.6 32 .................T........... TCATTCAGCGAACGCAGGAGAACCAGCCGCCG 11822 29 100.0 32 ............................. TTCGGGAATTTATTCAGCCAGACGACAGCCGA 11761 29 100.0 33 ............................. CCGTATCTGCTCTATCAGCTCGGCTCGGCGCGC 11699 29 100.0 32 ............................. CGTCAGAAAAACGGTTTATGCCGCCAGCCTGA 11638 29 100.0 33 ............................. ACCGCTTTGTCGAACTCTCCGAACTGCGCCAGC 11576 29 100.0 32 ............................. CAAACTGTGATTATGTGCTGACTCAATCTTTT 11515 29 100.0 32 ............................. CTGACGGTAAAACTACGGTACCGCCGTAGTAA 11454 29 100.0 32 ............................. GGGCGGCTGTCGTGGGTATTGAGAACACCGCT 11393 29 100.0 0 ............................. | A [11366] ========== ====== ====== ====== ============================= ================================= ================== 46 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGTTGCGGAAATGCCGTCATGGCTTGGGCGACCAACACGGAGTCGGGATTTGAGTTTCAGACATGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAAAAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCGATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 31525-30399 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMLR01000005.1 Salmonella enterica subsp. enterica serovar Oslo strain LAT9 SosM_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 31524 29 100.0 32 ............................. CGCCATCATCGCGCAGCACTGGCTGGTGGATA 31463 29 100.0 32 ............................. TACGTTGACGCTGGCAAACGGCTCGATTTCGT 31402 29 100.0 32 ............................. CTGTTAACTCAGCGATGGGGAGTGTCGGTGGC 31341 29 100.0 32 ............................. CCTGGCGGCACACTCTACCGCCCGTGGTGGCA 31280 29 100.0 32 ............................. GCGGAAGGATTCGTCCATCTCACCGCGATCAA 31219 29 100.0 32 ............................. CGTGTTTTCATTCCCCGCCTCGCCTATTTTAT 31158 29 100.0 32 ............................. CCCCGTTAAGGGGCTTTTTTATGCCCGCCGTC 31097 29 100.0 32 ............................. TGCTGGATACACGCGTTTCAATGGTCAGAGTT 31036 29 100.0 32 ............................. TCCGCGGTGATAGTATGCGGGGAACTATAGAC 30975 29 100.0 32 ............................. GGAAACGAAGATGACCTTTATTAGAGATATCC 30914 29 100.0 32 ............................. TGCTGAATCTTTGCGAGTGGGATGATGGCACT 30853 29 96.6 32 .....T....................... CCGCTACGATCTATTCGAATCATAGTGGTGCG 30792 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 30731 29 100.0 32 ............................. TCCTTTTATTCTAATGGGTTAGATAGGGTAGA 30670 29 100.0 32 ............................. AAAACTGCACCGCCGCTGCCACTGAGTTTGCT 30609 29 100.0 32 ............................. GCGCAGAATTTACAGGTGTCACTGTTGTCCGG 30548 29 100.0 32 ............................. GGCGTGGTGTATATCGGTCTTGATGCGTTGTC 30487 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 30426 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATTAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //