Array 1 429944-432093 **** Predicted by CRISPRDetect 2.4 *** >NZ_QADS01000002.1 Listeria monocytogenes strain LM-F-132 LM-F-132_scaffolds_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 429944 36 100.0 30 .................................... TAAAACAATGGTGCGCTTTTCAACTGGTTT 430010 36 100.0 30 .................................... TCGTGATTTCTTCCTCATGCGCGCTTTTGA 430076 36 100.0 30 .................................... TTATCAGCAATTGAAACTATTAAAAATGAC 430142 36 100.0 30 .................................... CCTAGACCTAGATGCTACTAGAGTGGACGA 430208 36 100.0 30 .................................... TAATGCATCTTTATATTGATTTACCTCACC 430274 36 100.0 31 .................................... TGGAAATGAACGATTGTCGGCATTCACGAAT 430341 36 100.0 30 .................................... AGATATGGGCGAACTACCCGACGACAACAA 430407 36 100.0 30 .................................... GAAGAAGTCACTAGTTGGGTCAAGCAAGGC 430473 36 100.0 30 .................................... TAGTGCCAGTAAATTCAGTTCCTCCAAAGG 430539 36 100.0 30 .................................... TGTAAATGCGTTTAAATCGATGGGAAGCGC 430605 36 100.0 30 .................................... ACACGTGTGGAAGAAGAGGGCTCTGACGCT 430671 36 100.0 30 .................................... GTATGAAACGGTTAAATGGATCTCTATAGC 430737 36 100.0 30 .................................... ACCAAGTCTAAGTGTAGACTGGCGTGCGCA 430803 36 100.0 30 .................................... TTTAATGATTTTCTTTTGCGCGCCGTTGGT 430869 36 100.0 30 .................................... GAATTTTTTTGTAAGATCGACAACTTTTTC 430935 36 100.0 30 .................................... TTGATAATGATAAGGCTGTACGGATTATTC 431001 36 100.0 30 .................................... TAACAGTGTATTTCTATTGCTCGGTGTGTT 431067 36 100.0 30 .................................... TGGAGATAACGAAGAGTAAAGCGAGGCAGC 431133 36 100.0 30 .................................... GCGTTGAACCAGAAGGTGGGAAAGAAACAC 431199 36 100.0 30 .................................... TGGTAATTTAGTATCTATTACGGCTGGGAA 431265 36 100.0 30 .................................... AGTTCATGCAGATGTTCCAACAGACTATGA 431331 36 100.0 30 .................................... AACAGCTCGGTTCACAGCCCAAACAGGCGA 431397 36 100.0 31 .................................... TAGCATCCCTTTGTTGAAAACATAGTCTGAA 431464 36 100.0 30 .................................... TTAAATTTCCCTTCTAACACTATCTATCAA 431530 36 100.0 30 .................................... ACGTGATGGTCCTTGGAAAAGGAGATTACT 431596 36 100.0 30 .................................... TAGTTATTTGCTTAGAAATGTCATCCATCA 431662 36 100.0 30 .................................... CTAGAAGCTTTGACATTAATATTACGCTTA 431728 36 100.0 30 .................................... AAATAATTTTTTTGATCATGTTGCAACAGC 431794 36 100.0 30 .................................... TGCAATATTGTCTGGATCTTTTTTCTTGTT 431860 36 100.0 30 .................................... AGTTAGATAGATAAACAAACTAAACAAAGG 431926 36 100.0 30 .................................... TAGTTTTTCTTCGTCCTCTAAACGCAAGCT 431992 36 100.0 30 .................................... TGTCTGAATGTAGTTGATATCTTTAACTTG 432058 36 72.2 0 .........A..CA.....C.....A.C.A..C.TA | ========== ====== ====== ====== ==================================== =============================== ================== 33 36 99.2 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAGCTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACCGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : AGAGACAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAAACTATCTACATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAAGGACGGAGAAAAGTTTCCTCATCTCTATATATACTAGAGTGGCTTAGACTTCTTAAATCCGAATTTTGAAATGAATGTTGACCAAGATAAAGATATAAATAAATTGTTTCCCTATTCAATTCGTTTCAACTCAACTTGCAAATTTCAAGTTGCTACAAGCAAAGGGGATATACCGTTGAAAGTGGAGGAGCAAAATAATTGTTACGAGACCAAAAGTTTAAAAATTTTATATGATTATATTCTAAATGCGAGTAAAAATGGTGACACGCTTGAACTATATACTGTTTGGACAGCGAGAAAGATTTACCGTTAACGCACAAACCAGAACTGCTTTAACTATCGGAAATCTAGTTTTAAGTGACAGAGAGCTATTAATAATTAAAAGTGAGACA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 281518-282258 **** Predicted by CRISPRDetect 2.4 *** >NZ_QADS01000001.1 Listeria monocytogenes strain LM-F-132 LM-F-132_scaffolds_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 281518 29 100.0 36 ............................. TCTTTAGTTGTTACTTGTTGGTTAATGAGATCTACC 281583 29 100.0 36 ............................. TGCTCTCTTTTGTGTAAAGCACATCAAGCATGTAGC 281648 29 100.0 35 ............................. GCGATTTTTGTCAAAGGGACAGCGATGGGTTACAA 281712 29 100.0 37 ............................. TTACCACCAAAGTCCCTACACTCAATACCACCAAAGC 281778 29 100.0 35 ............................. CGCTCTGACCTGTTCCTTGTGCAACACTCGTTACA 281842 29 100.0 34 ............................. TTTTCTACTCCTGCTTCTAAAATGTCGTTTATAA 281905 29 100.0 35 ............................. CTAAAACATCCTTCACTGTATCAACTCCTTTCTAT 281969 29 96.6 36 A............................ AAAATAGGAGGAAATAAATTATGACTATCAAATTAA 282034 29 100.0 35 ............................. TTTGTTGAATCAACGGATATAGATTTTACAATTTC 282098 29 96.6 37 ................A............ TTGGTTCCTTTGGAAAACAACAATAACGTGTAGTATT 282164 29 75.9 36 ......T.C.A.C...CA...T....... GCAGAAGCAGCAAAATAACCAAAAGTAATGACTTTC G [282187] 282230 29 79.3 0 ......A..T....AGA......A..... | ========== ====== ====== ====== ============================= ===================================== ================== 12 29 95.7 36 GTTTTAGTTACTTATTGTGAAATGTAAAT # Left flank : CGTCCGTGCCACTACTTCAGCTGATATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCCGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTTGTTATCTGTCGACCTCGAGTAGCGTGAAAAATACCGGGGATCGACAGAAAGTTGTAAGTGGTTGGGGTGGAAGAAGTTTGGCGGTATTTGCTTGGGGGAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGTGG # Right flank : TGAAAACCTGTTATACATAGGATTATCTATTTCCGTTATAATTATTCCTTGCAAATAAATTCCAAAAAACAAACCCCTCATTAATTGGGTTTGTTTTTTTGTGAATAATTATAGTCAAACGAGCAATCTGTTAACAATTTAGCAATAAACGCAATAAAAAGCCGTTTTTTCACTATGGATTGTACTATAAAACATAATCTACCTATGCTAAAATTTAAGGGAAGGTAAGCTGAATAATACATATAAGGAGGACTCTACTATTGAAAAAGATTCTAGTGCCCATATTATTGTTAGCAACAATCTTAGCAAGCTGTTCCTCGCCGAATGAAAAAATAACCAAAGACACTAAAATATCCAAGACTATTACAATAAGAGCAGATTACAAAGTTCCAAAAGATATTAAAGAACTTGAGGATGATAGTGCTAATATTGTTAAAGTAAAATTTCTTCAAAATAAAACGATAGGCAAGGATGGTAGTACTATCAGCGAGATAGAAATT # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //