Array 1 193696-195376 **** Predicted by CRISPRDetect 2.4 *** >NZ_NITI01000005.1 Cronobacter sakazakii strain MOD1_KW1 CsakKW1_contig_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 193696 29 100.0 32 ............................. GTTTATGGCGGCGTTCAGTACCTTTTCACCTC 193757 29 100.0 32 ............................. CGATCACATAATCGGCCTTGAATCGCTCAACC 193818 29 96.6 32 ............................C GCTGATATGCGTAAGGCTCGAAGAAGTCGAGC 193879 29 100.0 33 ............................. CGATACGCGCTGGCTTACAAAGCCTATCGCGGC 193941 29 100.0 32 ............................. CTTCCGCTCCTCTTGTGAGAGGCTTTCCAGCT 194002 29 100.0 32 ............................. AGCTTGGCCGCCAGGCTTACGAATCGCTGGTG 194063 29 100.0 33 ............................. CTAAATTAGCAGATATTAGCGCACTGCTTGTTG 194125 29 100.0 32 ............................. CTTCAGGTTTCCGACCTGCCAAATGCCATGCA 194186 29 100.0 33 ............................. TTGGTGTTGGTGCATATAGCAGTCAGGACACTT 194248 29 100.0 32 ............................. CAGCCTGAATATGACCCTCGGTGAGCAGGGAT 194309 29 100.0 33 ............................. TGGGGCGATCTCTCGCTCAAATTAACCACCGGC 194371 29 100.0 32 ............................. CCTTCTGCGCTCCCTCCGGAGATTTTTTCGAT 194432 29 100.0 32 ............................. CGCTGGTGGCGGTAAGCCAGGTGCGCGGACAC 194493 29 100.0 32 ............................. CCCCGCTCTTTTTTCTGGCAGGTAATTATATC 194554 29 100.0 32 ............................. CTGCCGGTTTCAACGGTAACATTGTCCACGAT 194615 29 100.0 32 ............................. CCGCCGTAACGGCTGATTATGGTCGAGTTCTG 194676 29 96.6 33 .C........................... AGAACACGTTCCCGATGGGCGGCGGCTACTTCC 194738 29 96.6 32 .C........................... GTGCTGGTTTATGTCAGACGGGATTTTGCTTA 194799 29 96.6 32 .C........................... TGGAGCCGGGGCCAGCGGACAGCGCTATTTAC 194860 29 96.6 32 .C........................... GCGTTTTACAACACCCCTCTCGGCGAGCTGTG 194921 29 100.0 32 ............................. CAGCATGAGGCTCACACCAGTATTTGGCATGG 194982 29 100.0 32 ............................. TCGGCACCGGTTGCGGCGTTTTTAGTCAGAGC 195043 29 100.0 32 ............................. AACGGTGAATTCTTAGAGGCTTAAGCACACTG 195104 29 100.0 32 ............................. CGGAGTTGAATGGCGGGCATCTTTATCAGGAT 195165 29 100.0 32 ............................. CCATATCCCTCGACAATTTGCGGTATGACTTC 195226 29 100.0 32 ............................. CCCGTGCAAACGAGCATCGACGGTGGCGTGGT G [195247] 195288 29 96.6 32 .C........................... AGCTCATGAAGCGCAACAGCTTCGGCTCTCTG 195349 28 75.9 0 GC.......-...C...C.TA........ | ========== ====== ====== ====== ============================= ================================= ================== 28 29 98.4 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ATGAAAGCTTTAAATGGATGATGGCGAACAACATCGCGTTTATTGTCGCCAATATCAATATCAACTACCGTCGGCCCGCCGTGCTTGGCGATCTGCTGACTGTCACGAGCCAGGTGAAGCAGCTTAACGGTAAAAGCGGGGTCTTAAGCCAGGTCATTACGCTTGAGCCGGAAGGCGAAGTGGTCGCCGATGCGCTGATCACCTTTGTCTGTATCGATCTGAAAACGCAGAAAGCCTTACCGATTGAGGGCGATCTGCGTGAAAAACTGGAAAAAATCACAGGGTAAATTCTGCAAAAGTGGCGCTTGTGCTGGCAATCATGGATTTATCACCGCACAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTGTAAAAATGTTGGTAGGATGTGGAAGGCGAAAAAATGCCATTCAGTACAAAGGGTTACTTTTAGT # Right flank : GCTCAGGCTCTTCGCGCCTGTCACTCGCCACCCTCATTCCCGCCACAATCTTCAGCAACGTTTATACTTCAAAGCCCTTGTTAAATTTTGAACACTGCGCAACGAAGGAGAGGCTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGCTGCATGCGCACCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGGCTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGATATGCGCCATCCGCGCCGCCGTTTACCACTCTTTTTCCGGGCGCTGAATAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATTAAAGCGCTCGGCTTTAAGCCGGAGGACGTCCGACACATTGTGCTGACGCATCTGGATTTCGATCATGCGGGTGGGCTGAGCGATTTCCCGCAGGCGCAGGTGCATCTGATGCAGCGTGAAATGACGGCTG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 221073-222442 **** Predicted by CRISPRDetect 2.4 *** >NZ_NITI01000005.1 Cronobacter sakazakii strain MOD1_KW1 CsakKW1_contig_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 221073 29 100.0 32 ............................. TGCCGTGGCATCTTTACTTGCTTCATTAACCG 221134 29 100.0 32 ............................. CCAGCTATTTTTTGCAGGTCAGGGGATAGATA 221195 29 96.6 32 ............................A CCCCGTCCGGTATATTCCTGGGCTGGCCGGAG 221256 29 100.0 32 ............................. GCGGTGCCGCATGAAAATCCACTTCTACAGCC 221317 29 100.0 32 ............................. CATCCATTGCTCGCGTCGCCCAACCATTAGGG 221378 29 100.0 32 ............................. TGATAACGCCTGTTTTTGCGACCAGGTCAGCT 221439 29 100.0 32 ............................. ATTGATGCCCGCTAACCCGGTGCGGGCGTACA 221500 29 100.0 32 ............................. CCAGTATCACCTTTCAATTTTACCCCTTCCAT 221561 29 100.0 32 ............................. CCCCTGACCTGCCAGTGCTTCCACTGTCGCCA 221622 29 96.6 32 ............................C ATCAATATCGACTATTTCCCTTTCAATCGCCA 221683 29 100.0 32 ............................. TGCCGCATTTGCGGTGCTGAAATGACAATTCA 221744 29 100.0 32 ............................. CATGGCTTGACCCTGATTTGAATACAAAAGAA 221805 29 100.0 32 ............................. CTTCAGATCGGCCAACGCGACACGTTTGATTA 221866 29 100.0 32 ............................. GATATATCAACTAGTTGAAATATATCGTTTTT 221927 29 93.1 32 ...........G................T ATCCCCCAGCATAACTCATCATCTCGCTGGCC 221988 29 96.6 32 ...........G................. GGGTTGTTAGTAATAAGGTGGTAACAGTGGTA 222049 29 96.6 32 ...........G................. CGCCAGGCAAACCACCACGCGCCGACCAGCTG 222110 29 93.1 32 ...........G.A............... GTGGTAACAGTGGTAACAGTGGTAACAACCAT 222171 29 93.1 32 ...........GG................ GATTCTGTCGGCGGGTGGCAGAACTCGCTGGA 222232 29 96.6 32 ...........G................. TATTCATCTTAACTCCTAAATTTTGTGAAAAA 222293 29 96.6 32 ...........G................. CGACACGATCCGCCGCCTGGGTTACGAAAGCG 222354 28 96.6 32 ...........-................. ATTCACGGTAACGTCACCGCCAGCACCGTTTT 222414 29 89.7 0 ...........G.........G......A | ========== ====== ====== ====== ============================= ================================ ================== 23 29 97.6 32 GTGTTCCCCGCACGAGCGGGGATAAACCG # Left flank : GATGTCCTCTCGGCTGGTGGTATTTCGCCTCCAGCGCCTCCTGCAGATGCTCAACCGCCCGCGATACCGCAAGCTGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGCATGCTGGTCGTCGTGACGGAAAACGTCCCGCCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTCGGCGACGTATCGCGTCGGGTGCGTGAGATGATCTGGCATCAGATAAATGAGTTAGCGGAGGAGGGCAATGTGGTGATGGCGTGGGCCACGAATAATGAATCCGGCTTCGATTTCCAGACGTTCGGCGTTAACCGTCGTATCCCGGTGGATTTGGACGGCCTGCGCCTTGTCTCTTTTTTACCGCTTGAAAATCAGTAAGTTAATCGTTCTTTAACAATGTGAGATTGTGAACCAAATGTTGGTGGGATGTTGTTGCCTGAAAAAGCGTAATAAATACAGTTATATAGTTTTAGA # Right flank : AGTACATCAATAACGTGGCTTAATGAATATGTGCAGGATATATTATTTTATATGTCATTATCTAATCATTAACTCTGAGCTGGGAAATAAAGATAACGGTAATAATAAAAAATGAAAGGTATGGTATCTGTTCTATTTTTGCTAGTTATATTGAAATTCTTTCTATTGCTAACTTTTATGTTTGTTAATTTAAATTAAATGTTAATTACAGCGTTTATTAAGTTAAACATGTAGAATTTATACTTTCTTCAATTAATAGGAATATATAAATGACATGGGATAAGTATGCAGCAATACGTCATGCACATGATCGGGCCTATAGCAATAGCCATCATAAGTGTGAGTTATTTGTCAAAGAAGCTATTATTGCTGGTGGGGTGGATATACATCCAACACCTTCTGCAAAAGATATGGGTAACGCATTGATTCACGCTGGTTTTTATGAAGTTTATGGTGAGCCCGTAGCGGGTGACGTTGCTGTTATTAATGCGATCCCCGGA # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.83, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCACGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.70,-12.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //