Array 1 7330-8358 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMVN01000013.1 Methanosphaera cuniculi strain 1R-7 contig_21, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =========================================== ================== 7330 29 100.0 38 ............................. TAATTATCGCGATAATATTGCTTATCTATTTTTTTATT 7397 29 100.0 38 ............................. AAAAAAGAAGAGGATGTAAAAGGAGGTAATTAAGTTTG 7464 29 100.0 37 ............................. AAACAAATAAGAGAAGATTTAAAAAGAGACCATGAGC 7530 29 100.0 39 ............................. TGAATATGCTTGAATATAGACTGCAGGAAGTAACGTATG 7598 29 100.0 36 ............................. TTGGTTCTCCTGATTTCCACAAAAAAACACTACTGC 7663 29 100.0 38 ............................. ATTGTAACTCACACTACATCCACAATTTACAGTGTTTG 7730 29 100.0 37 ............................. AAAATTTAACAGCTCATGATGTGAACGTGTCTGATTT 7796 29 100.0 37 ............................. TCCAATTACAATGCCAAATGGAAAAACAATTTATCCT 7862 29 96.6 36 .............G............... TTCAACAGTACATTCAAGCCTTTCAAGTCTCACCTT 7927 29 100.0 38 ............................. GGAGTTGAAATTATCCATGAAAAACAACTAAGGAAATG 7994 29 100.0 38 ............................. CATTTAGTGCTACAGTATTTTTGGTTACTTCCGGTTTT 8061 28 96.6 37 ....-........................ TGGTGATGATCTTATGCCTCGTAAATATGAAAAAGAA 8126 29 100.0 43 ............................. TTTTCATCCCAGCATGTCCATTTTGGTTCAAAAACACTTACTG 8198 29 100.0 37 ............................. CCTGAAACATCAAAAACGTATGGAAAAATGTATCTAA 8264 29 100.0 38 ............................. TGTGTAAAACTAGACCCAATAAGAATAATACAAGAACG 8331 28 82.8 0 T...........T........-..T...A | ========== ====== ====== ====== ============================= =========================================== ================== 16 29 98.5 38 GTTTAAAATATACATTATTGTATGGAAAC # Left flank : AGTATTAGATAATTTATTTAAAATATACATCATTGTATAAAAAAAACTTGTTGTTCACTAATTCTAATACAAAAAATATACATCACATATAAGATATATTAAAAATAAAAACTAAATAAATACAACTCTTCAATTTTGAATTAGAATTATAATAAAAATATGCACATATTAGTATCACTATTACAGAATGTCATACAGACAAATACTAATATTTAAATATATACTAATTATTATATTTAAAAATGAAATAATAGTTCTTAAAAAAAAATTAATTAATAAAATAGAGTATAAAATTTTAGAGAACTACCATAAATCCAAAAAAATATTCCTAATAAAAAACATATAAATACTAAATAAAATAAACATATTAACTAGAGATAAATTATCTAACTTGGTCTACCTCTTAGAGAAAAAAACACTATTCAAGGTAGACTAAAAACAACTTATTTTTGAGACATATAACACTTTCAAAAAAACAAAAATACGGCAAAATAGCCGGG # Right flank : AAAGAAAAGATGAGGAGATAAAATTGAAAGTTAATGAAATTACAGGTGTTATGGTTCAGTATTATAAGGTTTGTATAAGAGAATTATGGTTTTATTTAAATCAAGTGAATATGAATTATGATAATGATGATATTAATATTGGAAAATTACTTCATGAAAATTCATATAAGCGTGAAAGAAAAGAAATTAAAATTGATAATATTGTAATTGATTTTGTGAAATTTGAAGATAAATTAACAATCTTTGAAGTTAAAAAATCAAGTAAACTTACCATTGGAGCTTTATACCAGTTATATTATTATTTATATATTCTGAAAAAATCAGGACTTGAAGCAGATGGTATGCTAGTATATCCTAAAGAAAAAAAACGTGAAAAAATAGTTTTAACTAATGAAGTTATGGAAGAACTTGACATAATTATTCAAGATATTATAGAAATTTCAAAATATACAATACCACCTAAGTGTCAAATTAAACCTTATTGCAAAAGATGTTCTTTT # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAAATATACATTATTGTATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.10,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 10240-10537 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMVN01000013.1 Methanosphaera cuniculi strain 1R-7 contig_21, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 10240 30 100.0 35 .............................. ATATTTATTATTATTATCTGTATAATACACATCTT 10305 30 96.7 35 .....T........................ CACAAAAAACACACGGAGACTTAATAAAAATGGAA 10370 30 93.3 38 A...............C............. GAAGTATTCCGGACTCTTCAAGATCACAATTACCGATA 10438 30 100.0 36 .............................. TTTCTATTTTTTGAAGAAGTGATATAGCTCCAGATT ATAA [10460] 10508 30 90.0 0 ........................C...TA | ========== ====== ====== ====== ============================== ====================================== ================== 5 30 96.0 36 TGTTTCCATACAATAATGTATATTTTAAAC # Left flank : ATATATAAAAAAACTAAAAACTACAATAAAACATCCACAATTAAAGAAAAAAGTATTATACCGGTATCTCATAAGACTAGAAGGATATAAAATAATAAAACACCTACTAAAAGACAAAGAATATGAATCCTTCAAAACATGGTGGTAAAATAATGTATATCCTAATAATATATGATATAAAATCAGAACGAATAAACAAAGTTTACAAATTCCTAAAAACTTATCTAACATGGATACAAAATTCAGTTTTCGAAGGAGAAATTACCAAAACAGAATACAAACTCATAAAAGACAAATTAACACAACTCATAGACCAAAATGAAGACTCAATAATCATATATAACATACCTCAAAAATACCTAAATAAAAAAATAATAGGAATAGAAAAAAACACAATAGACTTTATAATCTAAAAAAATATTCTTCTCCCTTCCACTCCACTTTCAATAAAAACTTTTTTTTCTTAAAAAAAATATACAATTGTGAAATAGTCATATATC # Right flank : AAGTTTATATCATATTTATAAAATAATAACAATAATACGGCTATATAAAAAGAATTTTTGGAAAAAGATAGTGAGAAGAAGTTATACAATTTTTCTTTATATTATGAATATGTCTTCTTCTTGTTGTGAGATGAATCCTGTTTGTTTGTCGTATTTTCGTTCTATGTCTTCTTTTGATATAAAGAATATTTCATCTTCTTGTGGCGTTGTTCCTAGTTTTTTTGTATCTACTGATATGGTGTAGTCTTTAAGTTGATTTTGTATTTTTTTATATTCTCTTTTTTTCTCATAGGGTTTTAGTTTTTTGTTTTCTCGTATTTGTTGATATTGTTTCCATACTTTTGTAGCTTTATCATCTAGTTCTATAAATACATCTATTTTTTCTATTTTTTCTTTAATTAGTTGGAAGTTTTGTGTTTGTGTTAATCTTAATTTTTCTAGTGATTCAAGTAGTTCTTCTGATTCTTCTGTTGATTTTTTTTGTTTTGTTTGTTTGTAGT # Questionable array : NO Score: 2.78 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTTTCCATACAATAATGTATATTTTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.70,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [83.3-83.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA //