Array 1 5322-6937 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCWN02000006.1 Salmonella enterica subsp. enterica serovar Infantis strain HIY0119 NODE_6_length_240475_cov_42.270836, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 5322 29 100.0 33 ............................. TCGTACACCAGCGCTTTACCGGAGTGTCCGTGC 5384 29 100.0 32 ............................. ATCAAATATCAGATAACCCCCGTCGGCAAACC 5445 29 100.0 32 ............................. ATCACATTCCTGAAAAATGACTCCCTTAGCGA 5506 29 100.0 32 ............................. GAAGATATTGAAAGCGCCCAATCTTCCCAGCT 5567 29 100.0 32 ............................. TCCAGCATTGACGCGAACCCTGCGCCGCTGGC 5628 29 100.0 32 ............................. GCTGAAATATTGCTATTTCCGAAGGGGCTGAT 5689 29 100.0 32 ............................. TCCCGCCTGAACAAAATCGACCACGTTATTAA 5750 29 100.0 32 ............................. GCTCCCGCGGGCGCTCCTGTTGGCCAGCATCA 5811 29 100.0 32 ............................. CGTCCAATACGAGCTGAGTGCGCACGCCCTTA 5872 29 100.0 32 ............................. CAGATCGACCGCCTGGAGGTTGAGGTGGTTGG 5933 29 100.0 32 ............................. GCGTGGATTGATTCTGATCGCCGTGGGCGGGC 5994 29 100.0 32 ............................. GAAACAGAGATCGCGTCCGATAATGCCGACAT 6055 29 100.0 32 ............................. AGAATATTCAACTCCAGCGGGAAAAAGACGCA 6116 29 100.0 32 ............................. AACTTTCATCAAACTGGATCGAAGGGCCACTT 6177 29 100.0 32 ............................. CCGGTTTTAGCTCGCTGGAAACCTCGCTTTTG 6238 29 100.0 32 ............................. ACGCCGAGGGTGAATATTTAGACCGGGACGCA 6299 29 100.0 32 ............................. GGATCATCAATGTGGGAAGTTATCACAACGGA 6360 29 100.0 33 ............................. CGAAATTCAGCGTCTGGAATGCAAGGATTTTGT 6422 29 100.0 32 ............................. GCTATATCCCCGAATCGTGCGCTACGTGAAAA 6483 29 100.0 32 ............................. ACGAGGTCATTTTCAGCACTCGTCAGGCGCTG 6544 29 100.0 32 ............................. ATGCCCTGTTCGGCAAAATCCCGCCACGCTGG 6605 29 100.0 32 ............................. TAAAACCGGTGCTGGATTTTGATGAAGACGAA 6666 29 100.0 32 ............................. CCATTCAACATCGCACTTAAGAACTTGTGCCA 6727 29 100.0 32 ............................. CGATATTTATCCAGACTGTCGGACAGGGTGGT 6788 29 100.0 32 ............................. CCTCATCGGGAGCCAACGCCGCGAGAATACGC 6849 29 96.6 32 ............................C AGCACAATCATTATTAGATGAACTTTCATCAA 6910 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAACAGTTTATAAACAACAATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGTCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATATGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGATATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 23220-23717 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCWN02000006.1 Salmonella enterica subsp. enterica serovar Infantis strain HIY0119 NODE_6_length_240475_cov_42.270836, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================== ================== 23220 29 100.0 32 ............................. TTGATTTTAATGGCGGGCGAATTGTATTTAAC 23281 29 100.0 33 ............................. TTTCCTGTAACATTCCGATATATAATTCTCCGC 23343 29 100.0 32 ............................. GCCCAATTGCCGGCGACGGTTTCCATGTCAGC 23404 29 100.0 32 ............................. TGGCGAAACAGGCCAGAGAACGCGAATTGCAG 23465 29 100.0 72 ............................. CGGCCAGCCATTTAAACAGCGCTGCAGCGGGGATAAACCGACAGGGTATATGAGCTTATACGTCATGAACCA 23566 29 100.0 32 ............................. TCGTTGGTGGCGTTCGTCACCTGGCTGTCGGT 23627 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 23688 29 93.1 0 A...........T................ | A [23714] ========== ====== ====== ====== ============================= ======================================================================== ================== 8 29 99.1 38 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACATCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGTAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.39, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //