Array 1 240202-238973 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR134515.1 Actinobacillus pleuropneumoniae strain NCTC10976 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 240201 28 100.0 32 ............................ TCACGACGTTCCCGGCGAATAGATTCGCGTTG 240141 28 100.0 32 ............................ CTTAGGCTTTAATAAAGCTCGAATCCTAAGCC 240081 28 100.0 32 ............................ TTTGGCTTTCCGGTCAAATTATGGCGGCGAAC 240021 28 100.0 32 ............................ TCATTTCAAGGATATAAAGATTTAAACTGCTT 239961 28 100.0 32 ............................ GTAGGCGACCCGTAGGGCTTGACATTGACAAG 239901 28 100.0 32 ............................ ATAATGTGGTATTGATTGATACTGATCCACAG 239841 28 100.0 32 ............................ TTGATAAGCACATGAGCAAATTTCTTAAACTG 239781 28 100.0 32 ............................ TCTAAAATACGTTTTAAAATTTCCCCGATTTC 239721 28 100.0 32 ............................ TATACATTCTCATAAAATAAATTGTTGCAATT 239661 28 92.9 32 .C.....................C.... AGTTAAAAAAAGCAAATGGTTAAAAACTTCGT 239601 28 100.0 32 ............................ AGTTAAGGACGAGATGACGACTTAACTATAAC 239541 28 100.0 32 ............................ GAATTTATGAAACTAGCGAAACAGCTAAATGA 239481 28 100.0 32 ............................ TTACTTTCCTCATCATTCGGATCAGTACGGAT 239421 28 100.0 32 ............................ TTGCACAACGTGATTTAGAGATGGTCGCCAGT 239361 28 100.0 32 ............................ AGATAAACAAAAAATAGAAGAAATTAATATCA 239301 28 100.0 33 ............................ CTGAACCACCGGAAGGAATACTACAATTAGAAA 239240 28 100.0 33 ............................ CTTGAGAAGCAAATAAAGTGATCAGTTTATCAT 239179 28 100.0 32 ............................ TTTGTAGTCCTTCGGATACGCTGCAAATTCTG 239119 28 100.0 32 ............................ TATCCGATAACCTCTTCCTTAGTTTTGCCACT 239059 28 100.0 32 ............................ TTGCCAATATCGCAAAATACGTTAAAGATCCC 238999 27 89.3 0 .....................C-.C... | ========== ====== ====== ====== ============================ ================================= ================== 21 28 99.2 32 CTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : AAAAACACAATTAATCGGAGAAGGTTTACAAGACTATGTGCTTATTACATCGGTAACACCTGTACCGGAAGAAATAGTCGAATACCACCGTTACCAAAGGGTACATAGAAAAGGTCAAAGTGCTATTCGCCGTACCGAGCAATTTTTAGTTCAACAAGGAAAATGGACTGAAGAAATTCGCCAAGAGATGTTAATACATCAGCAGAATCAAAAAGTATTTCCGCACGTAAAACTCAAGAGCGGTAGCACTAAACAACATTTTGTATTAGCGATACGACAGCTTCGTTTAGCAGAACCCTCTTTCGGCTTATTTAACACGTATGGATTAAGCAAAATAGCAACCGTCCCACATTTCTAACCTATATTTATAACCCTTTTTTCCAGAGAATTTATTTTTCCTTTAGAAACAAAGGGTTATAAAAACCTTTCAAAAAAGGGATTTTTTGATTAAAAGCTCTTTAACAACTTGGTATATCTAACATTCTAAAGTAAAATAACGA # Right flank : TCAACTGTATTCCATAAATAACATCGGAGAAAATAATATGAAAAAAACACCTTATATTCCGTCTTCGGATTTAAAGACGATTTTACATTCTAAGCGGGCGAATATTTATTACTTAGAACACTGCCGAATATTATTAAACGGCGGGCGTGTAGAATATGTTACCGATAAAGGCAATGAATCTCTCTATTGGAATATTCCTATTGCCAATACTATCTGTTTACTATTGGGAAGTGGTACTTCAATAACTCAAGCGGCAATGCGAGAACTGTCAAAAGCAGGGGTTATGGTCGGTTTCTGTAGTGGAGGCGGTACGCCGCTATTTAATGGGACGGAAGCAGAGATCGGTTGTGATTTTTTTAGTCCTCAAAGTGAATATCGTCCGGTCGAATATCTACAACAATGGTGTCGATTTTGGTTTGATGATAACAAGCGGTTAAATTCGGCAAAAACTTTACAATTGGCACGGTTACAATTACTACTTCGAACTTGGAATAAGTTTG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched CTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //