Array 1 100043-98856 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCGF01000032.1 Escherichia coli strain KCJ3816 NODE_2_length_357712_cov_18.1227_ID_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 100042 29 100.0 32 ............................. CAGGAGATCCCCGGAATATGGACCCAGAGCAG 99981 29 100.0 32 ............................. GTGGGTAAATTTAAATGAGTGATAATAATGAG 99920 29 100.0 32 ............................. GTCGCAGGCCTGGCAGTTCTTATCGTGATCTA 99859 29 100.0 32 ............................. CCTACCTTTTAACACAACCACGCTTTATTGCA 99798 29 100.0 32 ............................. CGTCGATTCATCGCCCCCGGTGGAGTGAAGCA 99737 29 100.0 32 ............................. CAAACGATGAGCGGGCCAACGAATCGCCGTTG 99676 29 100.0 32 ............................. ATCCACGGTTCGACGCCGATCGCCGTGGCTAT 99615 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 99554 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 99493 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 99432 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 99371 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 99310 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 99249 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 99188 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 99128 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 99067 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 99006 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 98945 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 98884 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 116976-115544 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCGF01000032.1 Escherichia coli strain KCJ3816 NODE_2_length_357712_cov_18.1227_ID_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 116975 29 100.0 32 ............................. CTGCAACAGAGATTTTAACCTCTAAAGCAGGA 116914 29 100.0 32 ............................. GATATACCATGTCATACAACCGACCGTAGCCA 116853 29 100.0 32 ............................. GTTATCTATTGTAGAGGGTGAAGGTTACAGCC 116792 29 100.0 32 ............................. TCTTGAAGATATCCAGCCCCAACAGCTGTCCT 116731 29 100.0 32 ............................. GCAAACAAAACGGCCACGTAAAGTGGAATGAC 116670 29 100.0 32 ............................. TGGCTATAGTATCACATGATTTCTATTTGTCA 116609 29 96.6 32 ............T................ ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 116548 29 100.0 32 ............................. ACTCCGATAGCCTGCTCAGAATTAAGGCGCAG 116487 29 100.0 32 ............................. GCAGCAATTGCCGGAGTTTTACTAATTGCCTC 116426 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 116365 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 116304 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 116243 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 116182 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 116121 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 116060 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 115999 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 115938 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 115877 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 115816 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 115755 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 115694 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 115633 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 115572 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //