Array 1 131460-131793 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAESHX010000028.1 Pectobacterium polaris strain A3 NODE_30_length_167401_cov_92.779457, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 131460 29 96.6 32 .C........................... ACGAGAACGTTAGTTGACATGATTATTCGTTT 131521 29 100.0 32 ............................. GGTGGGGGCTTAGGGTTGTATGGTGATTTCTT 131582 29 96.6 32 .T........................... AGGATGTAATTCCAGAGGACGTTTAGGACGGC 131643 29 93.1 32 ...............A............A GAGCTATAACGCAATGAACACATACGCGTTTC 131704 29 93.1 32 .T..........G................ CCATCGCCATTTCATCAGTGACGATGATTTGC 131765 29 93.1 0 ............T..............T. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 95.4 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AGTACGACAGGCTGACAGAGTATTACCGGAGGAATAAAGAATGATGTACGCAGACGCCATCAAGGCAGCTAACAACCTGACGAGTATCGTACCATTCCTCGGAGGCAGCACCTCTCGTAAGGATTATGAGGATGCGCTGAAACTAACCGAATACCTGATCGAGAGTGAACCTGACAGTCCGCTAATCGATATGCTGACTGCCAAAATTGACAAATACGAAGATGATGCGCCGGAGTTTGCAGCCTTCAATGAACGTGTTAAAGCACTCCCAGCAGGTATCGCTTTACTGCGCGTCCTTATGGATCAGCATCAGCTAACGCAGAGTGATTTTGAAGCTGAGATTGGTAAAAAGTCTCTGGTATGCCGCATTCTAAAAGGTGAGCGCACTCTAACGCTGGATCACATGAGAGCGCTTGCTAAACGATTCAATATTCCCGTGAGTGCTTTTGTTGATTAACACGACTGTTAAGAGATTCTTGCTAAGAGCAGCATAATGCGCC # Right flank : GGGCTTATACCCCTTGTTGCATGTTGGTCTAAATATCCCCCGCACGAGTCAAATCTCGCTTCTGGCTGGCGCGATGGGGGATTGCGTGTCAGTATTAAAGCACGCCATTTTTGCACCCACCGTCACGGTGAGGCGCTATGCCAATGATTTTGTCTTCCATACGTTACCGTAAGGAGGTGATATGAAAGTTGAAGCCGCAGAGTCGTCCGTCTTTGCCAGCCAGCAGGTGATGGCGAAGCGTTCCACAGAGCATGCCGAGAAAGCGGCGCTGTCCGAACAGCTTCAGTCTTATCAGGCGGGTAGCGGTGCTGTTCCTGCCGGTGAGACGACGCGGTATGATTTCACCCGCATTAGCCCAGCCGAGCTGTATGAAACGGTTGAAGGCCTTGTTAGCAGCGGGCGGTTGGGGCGTGAAGAAGGCTCCGCGCTGTTGGGTTTTGTCTCATCGCCGAGAGCCGAAGGGGGAAGCATTCCGCCTTCCAATGTGTTCCAGCCGATTA # Questionable array : NO Score: 3.94 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.20,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 19229-18243 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAESHX010000006.1 Pectobacterium polaris strain A3 NODE_6_length_32934_cov_136.016693, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 19228 28 100.0 32 ............................ CGATATTCATAGCGGAATAAACCTGTAGGGTT 19168 28 100.0 31 ............................ AGGTCTAACCGACTATCCACACCATTATCAT 19109 28 100.0 32 ............................ GGTAACAATGTCCCACGCTCACACAGTCCCGG 19049 28 100.0 32 ............................ GCGCATAAGGGCGAGCATAAGCCCGCGCATCA 18989 28 100.0 32 ............................ AACACGGAAGTGGCGATCAACAAAATAGTGAT 18929 28 100.0 32 ............................ CCCATCTGAACGAATGTATTGATTAGGCTATT 18869 28 100.0 32 ............................ TATTCCTAACCGGTCAATTAGACCGCAATCTA 18809 28 100.0 32 ............................ AGGGTGGGATGTGTGGGGTAATGACTGCGAAA 18749 28 100.0 32 ............................ TATAGCCAGCATGTCGTGACCAATGGTTTCAA 18689 28 100.0 32 ............................ TACTGTCACCAGCAGCACATAACAGATGGCGC 18629 28 100.0 32 ............................ GCCATCCGTGAAGTTGACGCTATCTGGAGAAC 18569 28 100.0 32 ............................ AAGTGCCACAGACAGCCGCAAACACCTTCTTT 18509 28 92.9 32 ...........T.T.............. AGACAATCCGGAAGAATTCCCATCAATGTTAA 18449 28 89.3 32 ...........G.T...T.......... GGTCAGCGTGATGCCGAAGTATTCCTGAGCAA 18389 28 96.4 32 .......A.................... AGACACCCAGCTCATTACCATATTGATAGGGT 18329 28 89.3 32 ...........T.T...T.......... CCGTTCCGCAAACTGTAAGCCAGCCAGACGCG 18269 27 82.1 0 ...........T.........C-...TG | ========== ====== ====== ====== ============================ ================================ ================== 17 28 97.1 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TATCCTGACGTTCTGTCATAAAGTCAGCGTCAGCGTGCCCTTCTTGCAAAAATGAATGCCAATTGGGTTTAACCGGACGCAGCATGATGGTATCCCCCTCACGCACGATCTCCAGTTCGTTGACCCCTTCAAAGTCCATATCACGCGGCAAGCGAATGGCACGATTATTGCCGTTTTTAAATACCGAAACAATACGCATGATGCACCTCCTCCTTCATATAAAATTCAGCCAGCCACTTACTATTTATTATTGCTGGCTAAAACATAAGCTAAGTATAGGTATTAATCACTCGATTGTATATTCATAGCATATGCAGATACCTAGCATAGGCCTATCGACGATAAATAAAATCTTTGCCATACGTTCATGACCCTTTTTTTACGCATCACCGTAACTCATTGATTTTTAATTTTGATTACCTGCCCTGATAAAAAAGGGTTTTTCGGGAAAAATGTTTTATTTCCTTTTAAAATTAGGCAACTACCGTAAAATATGAACG # Right flank : CTTATCAGAATGCGTCGCTGGCGCGACGCATTTCGGGAACTATTCCCCGTTGAGCGTGACAACCAGTGAGCGGCTACCGCCGTGGTTGCGATGTTCGCACAGGTAGATACCTTGCCAGGTGCCGATGTTCAGGCGCCCGTTGGTGATGGGAATCGTCAGGCTGTTGCCGAGCAGGCTGCCTTTCAGGTGCGCGGGCATGTCATCGCTACCTTCATAAGTATGGCGGTAATACGGTTCATCCTCCGGCACTAACCGACTAAAGAAGCTCTCGAAATCCTGCCGCACCGTGGGGTCGGCATTCTCATTAATCGTTAGCGCCGCCGAGGTATGTTTGATGAACACGTGCATCAGCCCGACGTTTATCTGGCGCAGTGCGATAACCTGCGCCAGTATTTCGTCAGTCACCAGATGGAAACCTCTGGCTTTCGGCTTCAAACGGATTTCATATTGTGCCCACATCGCGGCCCCCTGCTATCAGGCTTCGCGTGCCAGAATCGGTC # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 20727-20218 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAESHX010000006.1 Pectobacterium polaris strain A3 NODE_6_length_32934_cov_136.016693, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 20726 28 100.0 32 ............................ ATTTGGTAGCGTCACATTGAGAGCGTCTTGTC 20666 28 100.0 32 ............................ ATACTTTGAGCCAGGTCGCTATGAAGGTGTGC 20606 28 100.0 32 ............................ TCTGCCACGCCATCAGACGACGCTGACGAGGT 20546 28 100.0 32 ............................ CGCTTTAAGGCTATCGTCAGCATGCTTGAGGT 20486 28 100.0 32 ............................ CTGTTTCGCTGTGTCAGCTGATTGCTGTGCTG 20426 28 92.9 32 .......A.........T.......... ACGCATCAACGGCGTCACGAACAGCAGCGTGG 20366 28 96.4 32 .................T.......... AACACATAAACGTACTAACTTTCACAAAGGGA 20306 28 92.9 32 .......A....A............... TCATCAATAGCGCGATTTGCTCTTGCAATTGC 20246 28 89.3 0 ............AC..........A... | C [20221] ========== ====== ====== ====== ============================ ================================ ================== 9 28 96.8 32 GTTCACTGCCGTGTAGGCAGCTTAGAAA # Left flank : GAGGCGCTCTCTATGTTGGAGCAAACGGCCTGGCTGAAAGGATTGCGGGATTACACACAGATTTCTGAGTGTAAAGCCGTACCTGACGGCGTGAAATTTCGCACCGTACGCCGCGTTCAGCTAAAGAGCAGCGCTGAACGGTTGCGCCGACGCTCAGTCAGCAAAGGCTGGCTGACGGAAGCGGAAGCCGCAGCACGCATTCCCGACGCGGTGGAAAAACGCAGCGCACTGCCGTTTGTGCAAATCAAAAGCTTGTCCAACGGGCAGATGTTTTTCGTGTTTGTGGAACATGGCCCGCTACAGGACGCCCCCGTCGCTGGCAGCTTCTCTTCCTACGGTTTAAGCGCAGAAGCCACCGTTCCCTGGTTCTGACCCTTTTCTGGCGACCGGCTGCAAGCTATTGATTTTTAATTGCGGCTGGTCGCTCTAATAAAAAAGGGTTTTCGACAAAAAAGCCATATTCTCTTTAACAATCTAGTGGTTAGATTAAAAACCTAACC # Right flank : TATCAGGACTTGCACTTCGCCAGACATCATCCGGTCAGACTGACCGATTAGTTAACCCAATCTTCCAACGTTAGTCCTTGTACTCGCTCAAACTCTCTCAGGTTATTGGTAACCAATATGGCCTTAACGCTGATGGCATGACCCGCGATGGCCGTATCATTTGGGCCAATAGGCGTGCCTGCGGCGGCTAACGCAATTTTGATTTTCGTAGTGGCGTCTACTGCTGCGCTATCCCAAGGTAACACCGCATCGAGCCGACGACAGAAAGCATCAACTAGTTGCATATGGCGTGGCGAAGCTTTTTTTCCAACCGCCCCGAAACGCATTTCAGCGTAAGTGATAGCAGAGACCACGATCCGATCACGCCGCAATGTGCACTGCTGTAGCTTGTCAATCACCGCAGTCGGGTGTTCACGCATAATGAAGGAACAGATATTGGTATCCAGCATGAACAAACGACTCACAGTTCGAATCTCCCCTCTTCGACTATATCCTGACGT # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 29702-31889 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAESHX010000006.1 Pectobacterium polaris strain A3 NODE_6_length_32934_cov_136.016693, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 29702 28 96.4 32 ...........T................ TATTTGTGCCATTCTTGGCAAATATCCCGTCT 29762 28 96.4 32 ...........T................ TGCGTTTGATGAACTGCGCGACGGCGGGCGGC 29822 28 96.4 32 ...........T................ CGTGAGTTTTTGGGTATCAGTCAGGACGATTT 29882 28 96.4 32 ...........T................ TCAGCGGTGTTCATGCGGTGGCCTCCATGCGC 29942 28 96.4 32 ...........T................ GCACTGTGCCGATCTCACCGGAGCTTTATCAG 30002 28 96.4 32 ...........T................ TCTGGCGAGTACTCGGCGACCACTGCACGAAA 30062 28 96.4 32 ...........T................ TGACTACTTCCTCTGCGCGATCTGGACGCTTG 30122 28 96.4 32 ...........T................ AGTGAAAAACCAACCCCACGCACGATATCAGA 30182 28 100.0 32 ............................ GTCATAGCTTCTTGCAGGCGCAAATACAGCAG 30242 28 100.0 32 ............................ TGCGAACGTAGCTAACACAATCAAATCGCAGA 30302 28 100.0 32 ............................ GGCTGAAATCGGCACCTGACCGTTTTTGTACT 30362 28 100.0 32 ............................ TGCTCCCCTCTGATGATATACAGGTCTGAAAA 30422 28 100.0 32 ............................ AACGTGCTCCCGATTTTGACGTCCTGGGCACG 30482 28 100.0 32 ............................ TATTGGCGCGGCTCTCAGCGTGGGGAACTGTA 30542 28 100.0 32 ............................ TGATGCTGAATGCGCTGAATGTGAAATAATCA 30602 28 100.0 32 ............................ AGCATGTTAAACACATTAAAGCAGATCCAAAC 30662 28 100.0 32 ............................ CTGACCGTTTTTGTACTGCCCGCCCTGAAGAT 30722 28 100.0 32 ............................ TGTACAAATAAATGTCCGTGATGCTAAGGGGA 30782 28 100.0 32 ............................ GCCGATTCGCTGTGTCATCGTTATGCCTCCAA 30842 28 100.0 32 ............................ AGAGAAACCAGTATCACAGGCCATCAAAACCG 30902 28 96.4 32 ...........T................ ACAACCGGTATTGCCAGCTCGACTAGCGGTGC 30962 28 96.4 32 ...........T................ GCCCGGATCGGGTGATTTTGTTGTTGCAAAAA 31022 28 92.9 32 ..........TT................ TTGATTTCGCCGCCGCTCGGCTACCGTTCCGG 31082 28 96.4 32 ...........T................ TGTGACGTGGGACTATCTGCGCAACCTGGATG 31142 28 96.4 32 ...........T................ ATGAGACGTTGCATATAAGTAGGGTAGTCGAT 31202 28 96.4 32 ...........T................ TCATCCTGGATAATGGCGCGACACAACCTGAT 31262 28 96.4 32 ...........C................ ATAATCTCACGCCTAGTGAAATTATTTGCATC 31322 28 96.4 32 ...........C................ AGATGAAGCACAGCCTGCCAACACGGAAGTTG 31382 28 96.4 32 ...........C................ TCATGACCTCTCCGTATGAGCGAATGATCGGT 31442 28 96.4 32 ...........T................ AGACGGAAACTTGTACCTCACTCGCGTTGGAA 31502 28 96.4 32 ...........T................ ACGCTGGACGGCACAGAAAGCCTGTCACAGAA 31562 28 100.0 32 ............................ GGTATCTGGTTCCACCAGCAGATCGGAACCCA 31622 28 100.0 32 ............................ AGGGGAAGAAGTGGAATTTGTACTCTTTCGGG 31682 28 100.0 32 ............................ ACGGAAATAGCGCCTGATGCATCGCTCTGCAT 31742 28 100.0 32 ............................ CATCCGCTGCCAAGTGCTTTAGATACCTGACC 31802 28 92.9 32 ...........T.C.............. TTAACGGTATTTATGCGGATCGAGATAAATTT 31862 28 78.6 0 ...........C.C......T...TCC. | ========== ====== ====== ====== ============================ ================================ ================== 37 28 97.3 32 GTTCACTGCCGGATAGGCAGCTTAGAAA # Left flank : CGTGACGGAAGTGCCGGTTCCCAGCATGACAACGCTGGTATTGGCGATGGGGATATTCCAGTACAGAGACTGGCTTCCTTCTTCCGTGACATATTCGACACGGCCACCGTTAACGAGAATGCGGCAATGCTGGAGGTAATAAACATTGGCGCGTTTGGAATGAAGAATGGTTTTTAAGTCCGAAGGGCTAAAGGCGTTATCCATAATGTATTTTCTGCCGCAATCGATAATAGCTGTGACGCCAGCGAAATAAATCGCAGGCTAACTATTTGATAAGAAAAAATATAATATTCAGAAAACTAACGAAAATCAGACTATCACAAATATTCTGGGAAAATGGTGGCTGCAAAAAATATTACCCATACGCAGACCCTTTTTATTTGGCCTATTTCACAGGTTTAAAAATCAATGAGTTACGAAAGGGCGGAAAAAAAGGGTTTTTGCGACGAAAATGGCAATTGCCGCTAATAAAACAAATCGTTAGAGTGATCGGGCAACGG # Right flank : ACGGATTTAAGCGCTATTGTCTGTCTATTATCGAGGTAGCGCAGCGCTAGCGCCCAACCCTTAAATAACGCATATTGATGACCTTCTTTCGTAACGTTTTTAAGTAACGAGTTTCTTTTTAAGGGAATGAAAAGTTGTTGATTTGGCATTATTAACATTTAAAAATCATCATTTTTCCGTTAAAGTGCCCTTACAGGGAAATAGTGCGTTGACTTAAGTAAAATTCAAGGGAGTGAGTAACTGTGAAATACGATCCCGTTTTAAAAACGCTTGTGGATGATGACTATCGGTTAGAGGATCATCTTGATTTTAAAAAGCAGCATGCAGATATTAACTATCAGAAATTACATGCTCAACTAAATGAAATAAATAACGATAACATTCATGCCATATTGACTGCGCAGGAAGCGACGTATTTTTTAAAGACGTTATGCACACCAAACCCTAATGATTCGTGGAAAACGGCGATATTTGGCTGTGCCGATCCTACTTCATCGTTT # Questionable array : NO Score: 5.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.62, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGGATAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGGATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //