Array 1 94641-95705 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYOR01000001.1 Salmonella enterica strain BCW_4901 NODE_1_length_748560_cov_1.55831, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 94641 29 96.6 32 ..........T.................. GAACGAGTAATCTTTGTTTTCCCCGTACCTTC 94702 29 96.6 32 ..........T.................. CGAGGATAGTTGTACCAGGTCAGGCCGCGCTG 94763 29 96.6 32 ..........T.................. CAAAATCAAAATTTCGAAATAAATGATTGGAA 94824 29 96.6 32 ..........T.................. TCAAACGGTTCTGGAACATCTAAAAATACATG 94885 29 96.6 32 ..........T.................. CAGGAATTGGGGATGTTACCTGAAGATGTGAA 94946 29 100.0 32 ............................. TTCAGAACGATTATATTTTGATTTGTGTTCAG 95007 29 100.0 32 ............................. ACCGAGAGTGACATTTTCCCACTACTGGCTGG 95068 29 100.0 32 ............................. GACGCCATGCGCTACGTAGCGACGCGTGTTGA 95129 29 100.0 32 ............................. GAGAGTCGTGGTGAACTGGCAGTGCTCCGGTG 95190 29 100.0 32 ............................. AGATTGGCTATTGCGGTAGCATACTGACTCTT 95251 29 100.0 32 ............................. ATTTTTTGCGGTTCAATCAGCTCATACCACAG 95312 29 100.0 32 ............................. ACAAAGCCAAGCGCTATATGGCCGGTATTTTT 95373 29 100.0 32 ............................. CGCAATGAACTTTGTCGCGCCGCGAGGCGTGC 95434 29 100.0 32 ............................. ATGGTAAATATGAATTTAATGTCTATCCTGGG 95495 29 100.0 32 ............................. CCATGCTCCAGGGTAGCCAACCTGCAAGTAAT 95556 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 95617 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 95678 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 18 29 97.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGTGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTGATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGAGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGTGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 111964-114070 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYOR01000001.1 Salmonella enterica strain BCW_4901 NODE_1_length_748560_cov_1.55831, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 111964 29 100.0 32 ............................. GCGGACTCCTGCACCTCTTTGAGCCCGTCGAT 112025 29 100.0 32 ............................. TCAGCGTAGGTTGTTGATGTTCCCACCAGCCC 112086 29 100.0 32 ............................. GCCACAATCAGATCGAAACGCTCCGGATCACC 112147 29 100.0 33 ............................. TTGTCACTGCCCCTGTTGAATCAATACAGCCAC 112209 29 100.0 32 ............................. CAGGTCGGTTATCTCGAAGCTGCCCGCTCTGC 112270 29 100.0 32 ............................. AGGGCTGGCTGACGCGCACCGAGCGCCGCAAC 112331 29 100.0 32 ............................. GGGCTATATCCACGCCAAAGGGCCGCGCGACA 112392 29 100.0 32 ............................. CCAGGCACTAACTCGCAGTATCACTCCCTGCC 112453 29 100.0 32 ............................. GTCATCGCCGGTGAGGTATTTTTTTGGCTTAG 112514 29 100.0 32 ............................. GATAGCGCGGAAATTGCCGAGGTTATAGCTAA 112575 29 100.0 32 ............................. CGTCCAATACGAGCCGAGTGCTCACGCCCTTA 112636 29 100.0 32 ............................. TTGAGGAATTCTTCCCGCAACGCCTGTTTGTC 112697 29 100.0 32 ............................. CCCTGCCCGGCGATTGGATTATTCGCGGTGTT 112758 29 100.0 32 ............................. GGGGCTATTGAGGTTTGCCAGCACAACCTGTC 112819 29 100.0 32 ............................. TTCCACGCGTCGTCGTCAAACCTCGATTTCGG 112880 29 100.0 33 ............................. CAGAACCTGGCTGATGAGGAACTTTCAATCTGC 112942 29 100.0 32 ............................. TGCGATCTAATCTCCTCTGGCGTGACTGTACG 113003 29 100.0 33 ............................. TTGCCAGCCGAGGCCGTTACCGTTCGCCAGAAC 113065 29 100.0 32 ............................. CGCTGAATTCCGATATTCCGCCGTATTGCACG 113126 29 96.6 32 ............................T TTACGCAATATTAACAGACCAGGGAGCAGCGC 113187 29 100.0 32 ............................. GGGTTATCTCCCTGCCGTTAAAACGGACGTTT 113248 29 100.0 32 ............................. CTCATTTGCCTTGCTTGATGACCACTGCGGTA 113309 29 100.0 32 ............................. TCATCGAGTACGGAAAATCCGTTTTTATTGTA 113370 29 96.6 32 .............C............... CTACGAAGGCGTCTTTATGGCGCACAGTACCA 113431 29 96.6 32 .............C............... CCGTCCAGCTCCACATGCTCGCCAATCTCCTG 113492 29 96.6 32 .............C............... GTTGGCAGCATGATCGCTAAATCTAAAATGCC 113553 29 96.6 32 .............C............... TTAGCCATCCCCATACCAAAGTTAAAGTCGTA 113614 29 96.6 32 .............C............... CCTGGCAAATTATTTCCTGGATACTCGATATC 113675 29 96.6 32 .............C............... GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 113736 29 96.6 32 .............C............... GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 113797 29 96.6 32 .............C............... CATTCGCTCAATAGCGGCCCGCGTGGCGGTGA 113858 29 96.6 32 .............C............... GGGATTATGTCCTCTAAAGACTGGCTAATCAC 113919 29 93.1 32 .............C...........G... TTGAATACGTCGCGATACCAGTCACTCCGGAA 113980 29 96.6 32 ..C.......................... AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 114041 29 89.7 0 A...........TC............... | A [114067] ========== ====== ====== ====== ============================= ================================= ================== 35 29 98.4 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGCAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //