Array 1 42120-39529 **** Predicted by CRISPRDetect 2.4 *** >NZ_BHZW01000012.1 Escherichia coli strain 20-1BK entry12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 42119 29 100.0 32 ............................. CCGGTTCGCGAGGGGATCAATCTTCGCGCAGA 42058 29 100.0 32 ............................. CCCGGACGGCGAAACAGATAACCCCAATCAAC 41997 29 100.0 32 ............................. GGCGTTCATGGGTTAACACTGACCCGGCGGCG 41936 29 100.0 32 ............................. TCGCTATGGCCGGTCGTGTCGCTGATAGCCTC 41875 29 96.6 32 ............................A TTCTCATAAAGACGGGGAACCAGCATAACGCC 41814 29 96.6 32 ............................T AATGCAGTACGCGCCGGATCCGGTGTTACGTC 41753 29 100.0 32 ............................. CATCCGTTCAAATTCCATCAGATAGCAAACCA 41692 29 100.0 32 ............................. TATTGTTGACTGCTACGAATACGCAGACGAGC 41631 29 100.0 32 ............................. GCGACGATACCTGTGCGAGCTGAATAAAATAA 41570 29 100.0 32 ............................. CTGCGCGACCAACGGGAACAGGGCAAATGTGA 41509 29 100.0 32 ............................. TCGCACTCAATTTCGTCAGTGAACGGGAACCC 41448 29 100.0 32 ............................. ACGCCGAAAACGGTTGGTGCGTATAGCGATAT 41387 29 100.0 32 ............................. CTGTTTCTGGTTTTACCTCCGGCAGCATTTCA 41326 29 100.0 32 ............................. AGAGAGTGGTTTGAAGCCGCTCCCAGGGACGA 41265 29 100.0 32 ............................. CGGAACAACAGGTGCAACTCAGGGCACAGGAA 41204 29 100.0 32 ............................. GGTTATTTATAATCCATTGTTTCCATTACCAG 41143 29 100.0 32 ............................. CTGGTCGCGGCAGGGCGTTCAATTTTAGGGGA 41082 29 100.0 32 ............................. TAATCATTTGGGGCCCCATTAATTAAAAGGAT 41021 29 100.0 32 ............................. GCGCTCACATTTAGCGCCAGAGCCAGGCGGCG 40960 29 100.0 32 ............................. AATTCGGAATCACATTAAAAGGGAACCCGATA 40899 29 100.0 32 ............................. CAAATATATTTTGCGTTAATTATTCGAGGTAA 40838 29 100.0 32 ............................. GCAAAATATTCAATCACCCCACTGGGTAAACC 40777 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT 40716 29 100.0 32 ............................. CCTACGCCATGTGGATTAGTCCGGCGTTTCAT 40655 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG 40594 29 100.0 32 ............................. TTACCGAGCGTCACGAAACAGACAACACCAGG 40533 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 40472 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 40411 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 40350 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 40289 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 40228 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 40167 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 40106 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 40045 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 39984 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 39923 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 39862 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 39801 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 39740 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 39679 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 39618 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 39557 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 43 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 550798-552353 **** Predicted by CRISPRDetect 2.4 *** >NZ_BHZW01000032.1 Escherichia coli strain 20-1BK entry32, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 550798 29 100.0 32 ............................. CCAAAGCAAAAGAAGCTGTCGATAATATGCGC 550859 29 100.0 32 ............................. CCTACAGTTGCAATACGCTCACCAGGGCGGCG 550920 29 100.0 32 ............................. AATATACAACGTGCCGTATATTCCGTTCTCTG 550981 29 100.0 32 ............................. TTCAAATTGATACTGTAGCGAGCGTGCGGTTT 551042 29 100.0 32 ............................. CCAGCGTGGTTCGCTCATGGCCTGTCTCCATA 551103 29 100.0 32 ............................. GCGTCTATCAATTGACGCGCGGACGCTACGCC 551164 29 100.0 33 ............................. GTCTATTTGTCGTTAATCGGTACTGATACGGCA 551226 29 100.0 32 ............................. TCTCTCCCGCCATTGGTGCACTGGTTGCATCA 551287 29 100.0 32 ............................. GAATCCCAGAAAATGCAGCGCCCCGGCGCGCT 551348 29 100.0 32 ............................. CAGGAGACGGCCAGCCGGAACGGCGGCGGCGT 551409 29 100.0 32 ............................. AATTTGCATCACGTAGGGGCGGGGCTCAGTGA 551470 29 100.0 32 ............................. ACGGCACGCGTTACGCACCCGGACAGCCAATC 551531 29 100.0 32 ............................. GAACCGCATCAGCGGAAACCGACAACGGGAAG 551592 29 100.0 32 ............................. AATTCAGCAAAATTCGTGACTGACTCGATACA 551653 29 100.0 32 ............................. GCAATGGCATGGGCGAAGCAGAACGCAAAAGA 551714 29 100.0 32 ............................. CTGACACACTCAAGAAAAATCCCCTGCACATC 551775 29 100.0 32 ............................. GCCAGCGTCCTGAAAACACCCTCAGCGTGCAT 551836 29 100.0 32 ............................. TCGTGAGCAATTTTCGCTGGATCAACAGGGAA 551897 29 100.0 33 ............................. GCAGCCACATCCTGTTTAACTCCATGTATTCGC 551959 29 100.0 32 ............................. TCAGTTTTCTGAAAAAATTATTCTCTTATGCT 552020 29 100.0 32 ............................. CTCTTCAATCGCTTAAGGATCAGAGAATAGTT 552081 29 100.0 32 ............................. GAACTTGATCTGATTTGTGAATTTATTCGATC 552142 29 100.0 32 ............................. CCGGACGAGAAATTCACGTTCCTGCATTTCAT 552203 29 100.0 32 ............................. GGATCACAAGGGCGGCTATCAGGGTGGACGGA 552264 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 552325 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================= ================== 26 29 99.9 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCTTGCTGAACGCATCGGTGTTACTGCCGCAGCCCGTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //