Array 1 85349-83804 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029339.1 Streptomyces sp. SM17 plasmid pSM17A, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 85348 28 100.0 33 ............................ CTTCCTACGGCCGGACCGGGCCCCTGATCACCC 85287 28 100.0 33 ............................ GGTGCGCGTGGCCGACACTGTGGACCTGCCGCT 85226 28 100.0 33 ............................ CGGGCTCCGGGAGCGGTCTCCGAGTACCGCGGC 85165 28 100.0 33 ............................ CTCGGTGACCTCGCTACCGTCGGGGAATGTCAA 85104 28 100.0 33 ............................ CCTCGCGCGGCCTGACAGAGCGACTGCACGCCC 85043 28 100.0 33 ............................ CGCCGACGCCTACATTTACGAGCAGTACGGATA 84982 28 100.0 33 ............................ GCAGGGGGCGGGCCTTTTCGCCGTTGATCAACA 84921 28 100.0 33 ............................ GCACTCCACGAGGTGCGCGTGGGCGTCCCAGAG 84860 28 100.0 33 ............................ GCTCGACCGGCCCGCGCCGGCGGGCGATCTCTA 84799 28 100.0 33 ............................ CGCAGCAGGACGGCCACCGTCCGCGCAGACCTC 84738 28 96.4 33 .............G.............. GGTCTACCGGCACTACGCCCCGGCGACCTGGAC 84677 28 96.4 33 .............G.............. GTGCTCGCGACGCATGCCGCCCCAGGAGGACGG 84616 28 100.0 27 ............................ GGGCGGTGGCGATGGCGCGGCCCCGGA 84561 28 100.0 33 ............................ GTCATCAGGCTTCCCCTTCCGTGACGGTGGTGG 84500 27 89.3 34 ..............TA.........-.. GTACGGCTCTGGCACGGCGGCCGGCGCTCTGGCG 84439 28 96.4 33 .............G.............. GTGTGGTGGCGGTGCGTGGCCAGGCCACAGGCT 84378 28 100.0 33 ............................ GGTGCCGTCGCCCTCGACCCACACCGCGTACCG 84317 28 92.9 33 .............G............T. GATCGCTGAGACCGCCCACGGCCTGAACGTCAG 84256 28 96.4 33 ..........................T. CGAGAACGGCGTCCTGGTCTGCGGCAAGTGCGG 84195 28 100.0 33 ............................ CCGGTCGGCGGACTTGATCTCCACCCGCAGCCG 84134 28 89.3 33 .............G.A........T... CTCCGCCGGAGCCTGACGGCCGTGACGCAGCGC 84073 28 92.9 33 .............G..........T... GGAGACCAGCACGGTGCCGTCGGGGTCCTCGGT 84012 28 92.9 33 .............G..........T... GATGCCGGAGAGCCTGAACCACTGGCGCGTCAC 83951 28 96.4 33 ..........................T. TGCCGTCGTCGTGGCGTCGCCGCGGTCGGACCC 83890 28 92.9 31 .......T...G................ CACGACGCAGCCCGCTACGCCCGGCGCTGCC 83831 28 85.7 0 ......T...TG.........G...... | ========== ====== ====== ====== ============================ ================================== ================== 26 28 96.8 33 GTCGGCCCCGCACCCGCGGGGATGCTCC # Left flank : AGGGCGCGTCACCGTCCCCGGCCCCTTCGCCCCCGCCGGCCGTCCGGGTGTGCTCACCAACAGTGATGCGGTGCGACCCCGCGTCCCCGTCTGCCTCCGAGCGGACCACCGCGGCGCCGGCGCCGGACGCCGGCGGGTACTGGCCCGTGTGGTAGATGACGGTAAGGAACGGAAGCACCGCGTCCGTGCTGATCAGGTCGCCGTTGCCCCTGACCGGCAGGAGGTCGGGAGAGTGCAAGCCGCCTACCGGCAGCGCCTGGAGCAACGCCCCGTACCCCCAGCAGAACCAACAGCCGCCTCAGCGCGACGAGCAGGCACGCACCGTCCGGGGATTGGGAAGGTGTGACACCCTCCGATTCCGTACGGTCCGCGAGCCTCTCTCGGAGGTCGCGTACATCGCGATCTCTGACGATCCCCATTCGCTCCCGACCCACGAACGAAGGGTGAAGCACATGAATGAAAATGAGGCACCCTGGCGGTAACCTCCCAGGTCAGCAAGT # Right flank : GAGCCAGCCTGTGGTCATTCGATCGGGGCTCGCTTCGGGCCGCTGCGGCAGCTCACCTTCGGGCTCACTGCGCGCGGCGGGGCCGGTGCTGCGGCGGGATCGCGGGTTTTGCCCTCGTAGGGGCGTGATCGCACGGTTCAGGGCCCGAGCGAGGCCCGAACGGGAGGGTCATGCCGCCTTCCTGCGGCCGGGGCCGAGGATCTCCAGCCGGCGGACGGTCTCTCGGCCGCCGGTCTCCTCGGCGATGCGGTCGAGGAGCGCGTGCTGGCGGTGGCGGACAGCGGTGGCTGCGGCCGAGGAGTCGGGCTGGAGGGTGAGGGTCGCGGTGTTCTCGTCGTACTTGACGGCGGTGACGCGGCCAGCGAGGTCGTCGGCGATGTGCGACCACCGGTCCAGCAAGCCGCCGGCCGCGACCGGGGCCGTCCAGGCGCGGTCGGCGATGAGCTGCTGGATAGCCTCGCCGAAGGAGACCGGCTCCCGACCGCCGGTCCTGCGGGTGG # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.86, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACCCGCGGGGATGCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCACCCGCGGGGATGCTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 86937-86726 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029339.1 Streptomyces sp. SM17 plasmid pSM17A, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 86936 28 96.4 33 ............T............... GTACGGCGTCACCGAGCTGGGCGCGTGGCCGGT 86875 28 96.4 33 .............G.............. ATCTTCGGCCCAGCGCTTCTTGACGTCGCGGTC 86814 28 96.4 33 ..............G............. GAGGCGGACGCCGTCGACGCCCTCGATGTCGGC 86753 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 4 28 97.3 33 GTCGGCCCCGCACCCGCGGGGATGCTCC # Left flank : CGGCAACGGGACAGAGGATCTCGGTTGAGATCGATGACCCGAGCAGGGACACTCAGGCGATGAGCCCCAGCACATCGTCGGAGCCGATCGAGCGAGGGTGGGACGAGCCCTGGTATCGGGTCCGCATGGAGAACTTCCAGGCATCGTTCCTGCCCAGCGCCAGCGAGGACTTGGACGAGGTCTGCAACGTCGATGTCTTGGTGACTCTGACGGACGGATCCTGTTGGACCGCGACCATGTTCACTGTCGCGGAAGTCGAGCGCCTGATGAAGCTTTGGGCAGGGACCGACGAGGCCCTCGGGGGCCGGTATTTCTGGGTCTCGGACGGCCTGATCGTCAGGGATCCCGGCATCGGCAGCATGACCGGCGTGATCGCCGGACTGATCGAGAACGGCGAGTTCTCTGGGATCTTTCAACGGGTGATCAACGACTGACCAAAGTGCTCGGCCGCCGGAAGCGTCGTGGACGGCCAGGCCACGTCGTTCTCGCGCTCGATGGCC # Right flank : TCAGCCGTGTCCGCTCGCGAGCCCTTCGCTGCTGTCGGCCCCGCACCCCCGTCGCCAACATGCGCGGCCACGCCGAACTCACGCTGCGCCGCCACGGCACGGCCCCTCCGGAGGTACGCCACGCCCTCGAACGCATCACCAGTGAGGCGCGGCGGATGTCCCGCCTCGTCGACGACCTGCTGCTGCTCGCCCGCCTGGACACCGGCCGACCGATGGAGCGGGAACCGGTCGACGTGACGCTGCTGATCCTGGACGCCACCGCCGATGCACGCGCGGCCGACCCCGCCCACCACTGGTTCCTCGACCTCCCCGAGGAGCCGGTCGCCATCGCGGCCGATGCCCACCGGCTCCAGCAGACCCTCGGGAACCTGCTGGCCAACGGACGCACCCACAAGCCACCGGGCACCGAGGTGACCGTCGCCCTGACGGCGGACCGCGCCGCGGTCCAGGTGAGCGTCAGCGACAACGGCCCCGGCATCCCCGAGGAGGTGCGGCCCGAC # Questionable array : NO Score: 5.41 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACCCGCGGGGATGCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCACCCGCGGGGATGCTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [26.7-26.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 90033-88845 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029339.1 Streptomyces sp. SM17 plasmid pSM17A, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 90032 29 100.0 32 ............................. CCGCACAGATCACACACCTAGGCATTCCCAAC 89971 29 100.0 32 ............................. CCACCTTGACCAGCACGAACGCACTCCCGATG 89910 29 100.0 32 ............................. CCGCAGCAGTGGGGTGAGACGCAGTACGGCGT 89849 29 100.0 32 ............................. GCCCAGCCCACCACGGTGATCGGGGTGGAGTG 89788 29 100.0 32 ............................. GGCTCCCCCGCCGCCGGCGACACCAGGCGCGT 89727 29 100.0 32 ............................. TTGGCGTGCTCGGCAACAAGCACGTACCGGCG 89666 29 96.6 32 ............................G CCCACGTAATGCACAGCCCGACGTTCCCGAGC 89605 29 100.0 32 ............................. TCGACCTATACCGGCAATGGCTCACCCACCGC 89544 29 100.0 32 ............................. TGGCCGTACTCCTCGTCGGTGGCCTCGCTGCC 89483 29 100.0 32 ............................. CTCTCCCCCTGCATCAGATGCCACACGATCAT 89422 29 100.0 32 ............................. AAACAGACCCGTTATCGCGGGGGCCTAAGATC 89361 29 96.6 32 ............................G GGGCGCGACGATCGGACCGTGGCGAAGAACCG 89300 29 100.0 32 ............................. CCACCCCCAGTCATCTGCCGGTGCGGGCGGAC 89239 29 96.6 32 ............................T GAGCCCCTGCTCCCCCTTGGGAGTTGGAAGGG 89178 29 100.0 32 ............................. CCGACCGGGCAGTTCCGATGCGTCGTCGTAGG 89117 29 96.6 32 ............................G CCGCCGCAGAACGACGCCGCAGGGCCGCCGAG 89056 29 100.0 32 ............................. GCCACGCCGTACGTCGCGGCGCACCTGGACCC 88995 29 96.6 32 ............................G CACGACACTCCCCAGGATGCGGCCGGGGCCCG 88934 29 86.2 32 ......T......CT.............G AAGGTCGGGGAGATGGTCGATCCGGCGTTGCT 88873 29 82.8 0 ....T........C...A...GC...... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 97.6 32 GTCGGCCCCGCACGCGCGGGGATGCTCCC # Left flank : TGACCGACAACGACGAGCGGGGGCAGCAGGGGCGCGCGTGGTACGACGCTGGCGCCCGGGCCCAGGCCGCCGTCACCGAGTGGGCGCGTGAGGCCGCGCGGCAGTCGGCCCCGCACCCGCGGGGATGTTCCTGACCCCCTCATGAGTCTCGTCTTTGATGGGCTGTCGGCCACGCACCCGCGGGGGTGCTCTGGGCGGCACCATCTCCATCCGCCTCGACGCCATGTCGGCCCCGCACCCATGGAAATCTCGCTCGCCACGGTCATCGCCCTGGCACTCTGCGGCCGGCCGGCCCACCGGGTGCTGGGCGCACGGCAGTGGCCCACCGAGGCACATGCGTGGGTGTGGACCGAGAATGGCGTATTCGGGCTGTCCGGCCGCGACCGCGTGGACCTCCGCCGCCCCTGGGCCGGTGCCCTCGTCGCACCTCCCGTGCCGAAAGGGTGACGCACATGAATGAAAATGAGGCACCCTCGCGGTAACCTCCCAGGTCAGCAAGT # Right flank : CGCAACGGAGAGCAGTTGGAGATCACCCTCTAGTACTCCAGCAGCACTTCGTGATCATGGGCTATGGGGCATCGGGCAGGCCAGCTGTGGAGTCACTGGTTCATGCCGACAGGCGTGTGGTCAGGGCGTTGGCGAACCGGTGGTACTCGGCGACGACCGGCATGCTCGTGTTCTGCCCGTAGTGGGCGAGTCCGTGTGCGAGGTCTGAGCGGGCCTCGTTCGTGTCCCCGCGCAGGAAGTGAAGGGCTGGGAGGAGAATTCTGGTCCGATCGGGGTTGGGCACGTTTCCGCCTGCCCGAAGGGCGGTCAGTAGTGCGTCTGTGCTGGCGTGCTGCCGGGCGAACGGCAGGCCGTAGGCCTGAACGAGTTCGCATAGCTCGTCGGTAGCGCGTTCCGCGTCGCCCGGTTCGGCGACCCGTAGTTGCAGGAGGCTGTTGCCGGGGGTGAGGTGGCCGACCGGTCGGGCGATCGTGGCCGACGTCAGGGAAGCGGCCCCGGCG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACGCGCGGGGATGCTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCACTCGCGGGGATGCTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 93614-93196 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029339.1 Streptomyces sp. SM17 plasmid pSM17A, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================================= ================== 93613 28 100.0 33 ............................ GACGCGGCCGCCGAGGGCCCAGACGTAGGACAG 93552 28 100.0 32 ............................ CTCCGCCCCGAGATCGACCTCGTACAGCCCCG 93492 28 100.0 34 ............................ GCCCGGGTACTGCTACGTCGTCGCCGGGGGCATC 93430 28 100.0 33 ............................ CCAGCGCAGCCAGCTCGGCAGTTGTAGTGGCCG 93369 28 100.0 33 ............................ CCTGCACGGCTCGGGCATGAACATCACCATCAG 93308 28 100.0 57 ............................ CCAGCGGCGGGCGGCGAAGAAGGCCAGCCGCAGGTGCCGGAACCTGATCTCCCAGGG 93223 28 85.7 0 ....................C.A..G.T | ========== ====== ====== ====== ============================ ========================================================= ================== 7 28 98.0 37 GTCGGCCCCGCACCCGCGGGGATGCTCC # Left flank : GCGCCGGCCTCTTCGTCACCCACCGCCTCGCCTCAGCCCGCATCGCCGACCGCGTAGTAGTCCTCCACCACGGCCACGTCACCGAATCCGGAACATACGACGAGTTGCTACACCAGCCCGGCAGCCGCTTCGCCGAGCTACACCAACTCCAAAGCGGAACCGAACTGGTCCCGTGAACATTGCCCCGCCTGGCGTCGGCCCTCCCCCACACCTGACCCCATTCCCCGGGAGAGGACAAGCCGCCTACCAGCAGCGCCTGGAGCAACGCCCCGTACCCCCAGCAGAACCAACAGCCACCTCAGCGCGACGAGCAGGCACGCACCGTCCGGGGATTGGGAAGGTGTGACACCCTCCCAATCCGTACGGTAGGCGAGCCTCTCGCGGAGGTCGCGTACATCACGATCTCTGACGAACCCCATTCGCTGCCGGCCCACGAACGAAGGGTGAAGCACATGAATGAAAATGAGGCACCCTCGCGGTAACCTCCCAGGTCAGCAAGT # Right flank : GCAACAGGGCTCTGGGTGGGTACGCAGTCAGACGTGCGGCTGGTCATCTGTCGCCCCGCTGCCCACCGCGCCGGTAGCCTTAAGTGGGCAGGTGCGGTGGGCAGCGGCGGTCTCCGGGCTGCACGGGCTGCCGCACCGGTCGCAGACCCCGCGCACCTCCTGCGGGCAGCAGGGGCAGGCGCAGCGGTTTCGGACAGCGGGCACGCTGTAGCCACCGATGTACCAGTCGGTGTTGCCGCAGCAGAAGCCGCATTCGCCGATGCGGCACGGTGCGCACAGGCCGCTCACGACCGGGCCTCCGCGCAGGCAGGGCAGGCGCGCGGGAACCACGAAGCCCACGGGCACTGCGGGTCCGGGCGCACGCCGAGGTCCACGGCCGTGGCGGTGTCGAGTCGCCCGGCGCACCACACGCACTCGGTGCCCCGCAGCTGCCGCTCGCCGAGCGCGGTCGGCTGCGGTAACTCCTGCGTTGTCGTCGCCATGGTCATCCCCTGCTGTCC # Questionable array : NO Score: 5.98 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.17, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACCCGCGGGGATGCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCACCCGCGGGGATGCTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 99368-97884 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029339.1 Streptomyces sp. SM17 plasmid pSM17A, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================================================================================================================================================================================ ================== 99367 28 100.0 33 ............................ GTTCGCCGACCACGGCGGCGCCGCCCACGTCGA 99306 28 100.0 33 ............................ ACGCTCGGGATCAGGTGGTCGGGCACGTCCTCG 99245 28 100.0 33 ............................ CCCCCTCGGGCGCGCGGCAGGAATTCTCATATT 99184 28 100.0 33 ............................ CTCCTCCAGGTAGCCGGGGTAGACCTGTTCGAC 99123 28 100.0 33 ............................ GTCCTCGGCGGTCTTGTTGGGGGAGAGGTAGTA 99062 28 100.0 33 ............................ CCCCGAGGCCGCCAATCAGAAGCTCACCGAGCT 99001 28 100.0 33 ............................ TCAGGTGGTCGGGCACGTCCTCGGTGAGGCGAC 98940 28 100.0 33 ............................ CTGGGCGTCCGTCCACGGGTCCTTGCCGTCGCC 98879 28 100.0 33 ............................ CGCGCTGCTGCCGAAGACGACCGGGCTCGTCAA 98818 28 100.0 33 ............................ GGCGATGGCGCCGCGCACGGCGTCTGATGGGCT 98757 28 100.0 33 ............................ GAAGTAGGCCCCGATAGACCTTCCCGGTTGATG 98696 28 100.0 33 ............................ GCGCTGTGCGAGCAGTTCGTAGACGGCGCGCAC 98635 28 96.4 33 ............T............... CTTCACCTTCAGCCACTCGACGGCGACGCCCGT 98574 28 96.4 33 ......T..................... CCGGCCGCCCCGAGGGCACCCCTCCACCACTTC 98513 28 100.0 33 ............................ GAGCTGCGTGGACACTGAGGGTCGCGTGGTCGA 98452 28 100.0 33 ............................ GGGGTTCTCGGCGGTCGGGCCGGTCTTCCAGAA 98391 28 100.0 33 ............................ CGCTGGCCCCATGCCCAAGTGGCGGCATGACCT 98330 28 100.0 33 ............................ GTCGAAGATCCTCCGGAGCCGCGACGCTACGTC 98269 28 100.0 33 ............................ GCCCCGCGACCCCAACTCCGGCTGCACGGGCCG 98208 28 92.9 34 ...........G.T.............. GACGGTGGTGGCGAGGGGGATGTGGGCGGGCCCA 98146 28 92.9 204 ...........G...............T CTGTCCGAGCGGGACGCCGCGCTCAGCGTGAAGTCGGCCCCGCACCTGCGGAGGCACCCCGCTACCTGCGGCGAGGCTCGCGGGCCACGACGTGTCCTCTCCGCGCAAGCGGAGGTACCCCGTTGATGCCGTGCCCGAGGACGACGACGCCCTCTCCAGCGTGAGCGGAGGAAGCCCACATCAGGACCTCGGCCAGGGAAAAGA 97914 28 78.6 0 CGA........G..T...........T. | TT,T [97902,97905] ========== ====== ====== ====== ============================ ============================================================================================================================================================================================================ ================== 22 28 98.1 41 GTCGGCCCCGCACCCGCGGGGATGCTCC # Left flank : ATGCAGGCGTTGCCTTACCAAGATCGTGAACAGCGCATAGCCACGCGAACAACCTGCGGCCGCGCCCTGGACCACCGGCCACCTCATCCAGCAGGCCCCGCGTCGAAGTGGCAAGGAAGCTGTCCCACAGCCGCTCAGCCACAGCCGCCGTATCAAGCAGGTGCGACAGAAGAAGATTCGTCTGCCCGCCGGCACGCTCCGCCGACTTCCCCCACAAGACCCCTAACGGACCTTCCACCGACTCCAGCGGCACCCCTGCATCCGGCACGCCGGACCACCTCTCGCTCAGCACTCACAACTGCCCGGCACAGTAGAGGACACCACTGACAATTGACGGCGGACGGCCCAAAGACGAACATCCCCCACGGCGGGCGCCCGCACCACGCGGTCACACACCGCGCTCCCTGAACTCCACCACTCGCTGCCCGGCCCACGAACGAAGGGCGACGCACATGAATGAAAATGAGGCACTCTCGCGGTAACCTCCCAGGTCAGCAAGT # Right flank : AATCTCACTGGGGAGCGGCGCGGTCAGCGTGCGGCTGTTCCCGCGCTCGCGGGGGATGGCCCTTGGCGGTCATTTCGGCGAACGGCACGTTGGCTCCGTACTGAGCTGAGCACCCTCCGGGCAGAGTTATTCCATCCGACCAAGGGAGAGACTGCAGTGTCGTCCGTTCCCCGCTCAGAACGATACGAGAACATCCCGACCGCCTTGGTGTATGACATCTTCGCGGAGTTGGCCACCCAGCTCACCGGTCGCTACATCCGTCTGTCCGATACCGCAGCGTCCGCCGCGGAGCGGGACCAGTGGTGGCAGAAGGTGCTGGAGTTGCGCCAGTACAAGCGCGCAGTGCCCGCGCGCGACCGGGCAGCGTTGATAGCCCACATCAGCCAGTGGGAAGCGGAACTTTCCCGCCTTCGGGGCGCTCACTGTGTCTGAGGGCCGGGACTACTACCTCGCTGAGGAGGATCAGTGGGGTCGGGAGCGCGACGCCACCACGGCCAGCT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACCCGCGGGGATGCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCACCCGCGGGGATGCTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 6 109686-111421 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029339.1 Streptomyces sp. SM17 plasmid pSM17A, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 109686 29 96.6 32 ............................C CGCGCAGGCATCGGCGACCTGATCCAGACCAG 109747 29 100.0 32 ............................. GGCCCTTCACACAGGTCAGGGCCTGCCACACG 109808 29 100.0 32 ............................. GCGACGCGGCCCCGGTCGTTCCGGCGCGCACC 109869 29 100.0 32 ............................. ATCCGGCCGAGCAGCCCCCGCTTCTTCGGTGC 109930 29 100.0 32 ............................. GTCCCGGCTCCCCCGACAGGCCGGCCCTTCAC 109991 29 100.0 32 ............................. CCGCCCTCTCCGAGCAGGAGAAGCGCGAGAAG 110052 29 96.6 32 ............................C GCGTCCTGGTGGTCCGTGATGAGCTGGGGGGT 110113 29 96.6 32 ............................C CGCTACCGGTCCGCCTGGCAGTCCGCCCGCTT 110174 29 100.0 32 ............................. CTGCCCACCAGTCACGACGGCGCCGTTGACCT 110235 29 96.6 32 ............................C CACGCCTCCCCCGCCGTCACCTCAGACGCCTC 110296 29 96.6 32 ............................T TCCTTGGATGCGCGGAAAAGAGCACCGCCGAG 110357 29 96.6 32 ............................C TTCGTGCTGTCGTGGATGACGCCGAGGTTGAC 110418 29 100.0 32 ............................. CGCCTGGGCCTGGTCGAGGACGCGGAGGCCGG 110479 29 100.0 32 ............................. TCGCTGGCCCACCGGGTGAACCAACTGGCCCA 110540 29 96.6 32 ............................C ACACAGTCAGCAGTCTCTGTCACGTGTCCTCC 110601 29 96.6 32 ............................C CCACTTCACGGCGTCGGACACCCACTCCTTGA 110662 29 100.0 32 ............................. GGCGGGCCCGCCACCATCCCGACCCTCGACGC 110723 29 100.0 32 ............................. ATGTACTGTCCCTCGCCCTTCTCCTGGAAGTA 110784 29 100.0 32 ............................. CCGATGCCGCCGCCAGGTCACCCCCGCAGATC 110845 29 96.6 32 ............................T CCGGGCCGAGATGCCCGAGGGGTCGGCCGACG 110906 29 100.0 32 ............................. TCGGGGCGGCGCGCGTCGGCCGCGTACACCAC 110967 29 96.6 32 ............................C CAGACGACAGAGAGCCCCCCGGCCTCCAGCAG 111028 29 96.6 32 ............................C CGCCCCAGGCTCCGCGCCGTACGGCCGACCGG 111089 29 96.6 32 .................C........... GCGGGGGAGCGCCACGCCGGGCCGATGTGGTG 111150 29 96.6 32 ............................T GGCGCTTGCGGTCGAGAACGGCCCCTTCGGCG 111211 29 100.0 32 ............................. ATCCGCACCTACAAGGCCGCGCCGGTCTACGA 111272 29 96.6 32 ....................A........ CGTTGTAGAAAATGCCGTCCATGTCGATGTCC 111333 28 96.6 32 .....-....................... CGCGCCACGCAGGACCACTTGGCGCACCTGTT 111393 29 93.1 0 ..............C.............C | ========== ====== ====== ====== ============================= ================================ ================== 29 29 98.0 32 GTCGGCCCCGCGCCTGCGGGGGTGCTCCG # Left flank : CCGCACAAGACACTCATCCGGCCACCCGCTCACACCTTGACCTCTCGCCAGCTGCGCTCGGGGAACAGCACATCGCCATCGTCGGACCAGAGTTCGAAGACCAAGCCCCGCCCCCGGGACAACAGCCATGACTGTCATCATCCTGATCGCGGCTCCAGAAGGCCTACGCGGCCACCTCACCCGCTGGATGGTCGAAGTCAACGCTGGAGTCTTCGTCGGCAACCCCAGCCGGCGAATCCGCGACCGTCTGTGGGAACTCCTCACCAACCGCATCGGCGACGGTCAAGCCGTCCTTGTCGAACCCGCCGCCAATGAACAAGGCTGGGCCGTCCGTACTGCCGGCCGTGACCGCTGGCGGCCCGTCGACTACGAAGGGCTTATCCTCTCCGCTCGAAGGCCAGCACATACACAAGATCGACAGAGCCGGAACTGATCGGTACACCGCAATGCAACTAAATGAGAACGGCAGACCGCTCAGATAACGCCGCAGGTCAGCAAGT # Right flank : CTTCCCTTGGCGTACGGCGTCGGGGATCCAGCGGTCGGCCCGGCCGACTGGCAGTCGCCCTCCGGGGCGGCCGCGGATCGCAACCGCCCGGCAGGGGAAACCCCGGGCCTGGGGCTCAGTCGTCGGGGGTGGTGTTGGACGCGTCGCAGGACCAGCAGGTCCACTCTCCGGGCAGTTCGTAGTGCGTGGTGGTCCAGAACCCTTTGGGGCGTCCCCGGATCACGTTGATCTCCCAGCACCGCCAGCAGTTGAACTCGAATTCTTCCACCACTTCAGCATCAACAACTCGGGGTGATCGGGCGGCCGACTGCCCGAAAGTCGATCAAATGCGGCTGAATCGTCAGGCTTGCCGAGCAGTCAGAGATCTGGGCAAGCCTTCCACCTGGTCTCTTCGTGGGTTGGGCAAGCCTTTCGGCAAGTGGGCGTGTGGAGAGTGGGGCACATCCGTTCCCGAGGAGGTGTGCCGTGCACGACTGCGGACCGGCGCTGACGCCGTACGA # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.66, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCCTGCGGGGGTGCTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCGCACGCGGGGATGCTCCG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2448226-2448438 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029338.1 Streptomyces sp. SM17 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 2448226 30 100.0 31 .............................. TCCCGCACCGGCGGGTGTGGCTGGTCGGCGA 2448287 30 96.7 31 .............................T ACCTCGTCCTCGACGAGCTGTGGCGCGTCCT 2448348 30 90.0 31 ...........A...........A.....G AGGCCACTCCGGTCGTCACGAACATCATCGA 2448409 30 76.7 0 ..............G......CAA.C.T.A | ========== ====== ====== ====== ============================== =============================== ================== 4 30 90.8 31 GTGGTCCCCGCGCACGCGGGGGTGGTCCCC # Left flank : TGGGCAAGCCCACACCGCGCCCCCGCTACGCCACCGGCAAAGTCCGATACCAGGCGAACTGCTCGTGAGTGGGCATCCAGTGCTGGCCGCACCTGGAGCAGTACCAGCGCCAGTTGTCGGGGTCGTTGCGGAGGTAGGTCGTGTCCTTCCAGAGCCGGCCGTGGATGTCCGTGTGGCAGGCCCGGTCAGGACAGGGCGGGGGAACGGGCGTGGTGCGCGGGCGAGTTGTGGTCAGCATGGGCGCCTCCGTGACTCGATGGGGTCAGGAGGGTGAAACGAGGGGGCTCGGGGCTGGGTGTGGGGCCGGGGCGAGGTGCGTTCGTTCGCGTGATGAATGGGGGATGAGATGCGCGGGGGACCGGGGTCTGCTCCGCCGCCTCGGTCCGCTGCGTAGGATCTAGCGAGGACTCAAGGCGAGGTGGGCATTGGGGCGAATGTCGCTATCGGTGAAGCGTTCAGAAACTGGGGCAGGGGTGCCGTAAGGCCGCTGGTCAGGGAGA # Right flank : ACCCCGCCTCACCCCGACCCGGCGCCCAGCGCCGCCACAGGCCTTGCTCCCCCCACCCCCACCTCCTACCATGAATGCGCTTTCACAACGCGTGAGGCGGGTCGGTGGGCTCGGGTTCTGGATGGTCGGAGCGGGCGGGACGGGATGAGGGTAGGGGCGCGTGGGTGACGGGGTGGCGGGGACGCCGACGGTGTATGACGTGGCCGGGCGGGCCGGGGTGTCGATCGCGACCGTGTCGCGGGTGTACCGGAGTCCGGAGTCGGTGCGGGAGGCCACGCGGGAGAAGGTGCTCGTGGCCGCGCGGGAGCTGGGGTACGTGCCCAGCGGGAGTGCGCGCGGGCTGGCGAGCCGGTCGACGGGGGTGCTGGGGCTCTGCTTCCCCGACTACTCCGACCCGGACGCCGAGAGCGAGGCGGCCACGGTGGACGCCGACGACGACCACGCGTTCATGCTCTACTCCGACCAGATCATCCGGGGTATGGAGCGGGCCGCGCGACGGC # Questionable array : NO Score: 3.59 # Score Detail : 1:0, 2:3, 3:0, 4:0.54, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-13.20,-13.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [36.7-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3663916-3663654 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029338.1 Streptomyces sp. SM17 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ==================================================================================== ================== 3663915 28 100.0 33 ............................ GGCTCGGCGGCGGGGGTTGAAGACGGTGAAGTC 3663854 28 100.0 33 ............................ GCGTATACGCAAAAGGTTGTATCGGCGAGCATT 3663793 28 92.9 84 .............A..........A... GCCCACGGACTGGGCGACCGCCAGGCCGCCCTCGCAAGGGTCGAGGTGGTCCGGTACGCGACTGGTGTGCGACCAGTACGTCAG 3663681 28 75.0 0 .C..CT......T.C....C....G... | ========== ====== ====== ====== ============================ ==================================================================================== ================== 4 28 92.0 50 GTGGTCCCCGCGAGGGCGGGGGTGTTCC # Left flank : ACGCCGACATCACCCGAGCCGTCGAAGCCGGCGCCACGGGCTACCTGCTCAAGGCCGAACGCCCTGAAGAGCTCTTCACGGCCATCAGGGCTGCGGCCTCGGGACGTACGGCGTTGTCGCCGCCTGTGGCACAGAGGGTGATGACTCACTTGCGTAATCCGCAGCCCGAGCTGACGCCGAGGGAGCGGGACATTCTGCGGCATCTGACGCAGGGGCTGGGGAACCGGGAGATCGCCCGGGCGTTGTTCATCAGCGAGGCTACGGTGAAGACCCATTTGGGGCGGATTTACCAGAAGTTGGGGGTGGAGACACGGGCGGGGGCGGTGGCTGTGGGGAAGGAGCGGCGGTTGTTGGGGTGAGGGGGTGGGCGGCCGGGGGGGTGGGTTCGCGCGTTGGGAGGCGTGGCGGAAGGGGGGTGCGTAGGTTGGGGGCTTGAGAAGGAGTAGAAAGGTGATGAGTAAGGAGATGGCAAAGGCCGCCTGAAGGTGCAGGTCGAGAAG # Right flank : CCGCCAGACCGGACAGCTGATCCCCCGCCCAACTCCCCGACCGAACCGACCGAAACCCATCCCGCCGAAGCGCAAGCACCCCCGAGCCCGCAAAGGCAGCACACCCACCCCAGCCCCGCCCTGCCCGCGCGTCAGACCCACCAAGGCCACCCCCCGCATCGCCCACCAAACCACCCCCGCCAAAACACCCCCGAGACCAATAGAACACCCCCGCCAACAGCACCCACGCCGACCACCCTCAACATCACGAACACATGATGGTCACAAAATCGCCACAGGCGGAGCATCCGGCACTCGCGGCATACCTCGCAGCCCCACACTGAGCGGACGCATCCGCATTCAGGGGGAATCATGAGACGCCAACTCGCCATCGCCGCAGCATCCTTCACCGCTGTACTCGGCCTCGCCGCCTGCGACACGGAGGTCACCTCCTCCCCCGACAAGCCCGCGGCCGCCGGCGACGCGAAGCCCGGCAAGGAAGCCGACAAGGCCGAACAGGC # Questionable array : NO Score: 3.66 # Score Detail : 1:0, 2:3, 3:0, 4:0.60, 5:0, 6:0.25, 7:-1.79, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGAGGGCGGGGGTGTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGAGGGCGGGGGTGTTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.90,-13.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //