Array 1 14632-12673 **** Predicted by CRISPRDetect 2.4 *** >NZ_NIDH01000025.1 Salmonella enterica subsp. enterica serovar Infantis strain SI05 ODE_27_length_37912_cov_12.729031, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 14631 29 100.0 32 ............................. GCGGAATACCACTATATAAAGCCCCTCAACCC 14570 29 100.0 32 ............................. ATTTTTACAAAAACTGGCCCCCTGAATTCATC 14509 29 100.0 32 ............................. TTGATTTTAATGGCGGGCGAATTGTATTTAAC 14448 29 100.0 33 ............................. TTTCCTGTAACATTCCGATATATAATTCTCCGC 14386 29 100.0 32 ............................. GCCCAATTGCCGGCGACGGTTTCCATGTCAGC 14325 29 100.0 32 ............................. TGGCGAAACAGGCCAGAGAACGCGAATTGCAG 14264 29 100.0 32 ............................. CGTGTTCGATGTAGGTTTCTTCCTGAAGGCGA 14203 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAA 14142 29 100.0 32 ............................. TTGGCATGGCTGGCGACGTAGCGAACAAAATC 14081 29 100.0 32 ............................. CATAAATTACTCGATGCGTACCTGTGAAATCT 14020 29 100.0 32 ............................. ATACAGTAGCAAAATAAAAAGGCCGCGTGAGC 13959 29 100.0 32 ............................. CAATGCCGTTTTGCCCGAGTTTTCACCGCCGT 13898 29 100.0 32 ............................. CTCTATTGCCGGGGGTCGAGATGGCCGCCTGC 13837 29 100.0 32 ............................. GTGATCCGCGCCTATGACGCAATGGTAACGAC 13776 29 96.6 32 ............................T GTAGCGCAGGGACTGGCAACGGTGCCGGGCGT 13715 29 100.0 32 ............................. CAGGAGACGGCCAGCCGCACCGGTGGCGGTGC 13654 29 100.0 32 ............................. GGCGTTTTATTCGACCTGAAAAAATGGATCGT 13593 29 96.6 32 .............T............... ACATCTCGCGGACAATAGCGATTTCCACCGTC 13532 29 96.6 32 .............T............... CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 13471 29 93.1 29 .............T..............C CTTGTTAAATACAGGCGGCGGCGGGGTTG 13413 29 96.6 32 .............T............... AACGGCGACGGGATCGTTTTTTGTGGCGAAAA 13352 29 96.6 32 .............T............... CAGGATTGGATTAATGAAGACGGGTACGAAAT 13291 29 96.6 32 .............T............... AGATTGCAGAATTATATTTCACGCTGGCAGCA 13230 29 96.6 32 .............T............... CTGTTGTTATGCGTTGGATCGTAATAGTTAAC 13169 29 96.6 32 .............T............... CTTGGCAGGGCTGCGCCGCAATGGCAGCAACA 13108 29 96.6 32 .............T............... GTCTTATAAATTGGGCTGATAGTGCCGCTGAT 13047 29 100.0 32 ............................. TACCTGCCGGGACTGGAGTGCAGGTAACCCCA 12986 29 100.0 11 ............................. CGGCCAGCCAT Deletion [12947] 12946 29 72.4 32 T.AAA.AG...TG................ ACAGGGTATATGAGCTTATACGTCATGAACCA 12885 29 100.0 32 ............................. GGCGATGCGGGCGCATTGTACGCGATGCAGAC 12824 29 100.0 32 ............................. TCGTTGGTGGCGTTCGTCACCTGGCTGTCGGT 12763 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 12702 29 93.1 0 A...........T................ | A [12675] ========== ====== ====== ====== ============================= ================================= ================== 33 29 97.8 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAACAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACATCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGTAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 32530-30914 **** Predicted by CRISPRDetect 2.4 *** >NZ_NIDH01000025.1 Salmonella enterica subsp. enterica serovar Infantis strain SI05 ODE_27_length_37912_cov_12.729031, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 32529 29 100.0 33 ............................. TCGTACACCAGCGCTTTACCGGAGTGTCCGTGC 32467 29 100.0 32 ............................. ATCAAATATCAGATAACCCCCGTCGGCAAACC 32406 29 100.0 32 ............................. ATCACATTCCTGAAAAATGACTCCCTTAGCGA 32345 29 100.0 32 ............................. GAAGATATTGAAAGCGCCCAATCTTCCCAGCT 32284 29 100.0 32 ............................. TCCAGCATTGACGCGAACCCTGCGCCGCTGGC 32223 29 100.0 32 ............................. GCTGAAATATTGCTATTTCCGAAGGGGCTGAT 32162 29 100.0 32 ............................. TCCCGCCTGAACAAAATCGACCACGTTATTAA 32101 29 100.0 32 ............................. GCTCCCGCGGGCGCTCCTGTTGGCCAGCATCA 32040 29 100.0 32 ............................. CGTCCAATACGAGCTGAGTGCGCACGCCCTTA 31979 29 100.0 32 ............................. CAGATCGACCGCCTGGAGGTTGAGGTGGTTGG 31918 29 100.0 32 ............................. GCGTGGATTGATTCTGATCGCCGTGGGCGGGC 31857 29 100.0 32 ............................. GAAACAGAGATCGCGTCCGATAATGCCGACAT 31796 29 100.0 32 ............................. AGAATATTCAACTCCAGCGGGAAAAAGACGCA 31735 29 100.0 32 ............................. AACTTTCATCAAACTGGATCGAAGGGCCACTT 31674 29 100.0 32 ............................. CCGGTTTTAGCTCGCTGGAAACCTCGCTTTTG 31613 29 100.0 32 ............................. ACGCCGAGGGTGAATATTTAGACCGGGACGCA 31552 29 100.0 32 ............................. GGATCATCAATGTGGGAAGTTATCACAACGGA 31491 29 100.0 33 ............................. CGAAATTCAGCGTCTGGAATGCAAGGATTTTGT 31429 29 100.0 32 ............................. GCTATATCCCCGAATCGTGCGCTACGTGAAAA 31368 29 100.0 32 ............................. ACGAGGTCATTTTCAGCACTCGTCAGGCGCTG 31307 29 100.0 32 ............................. ATGCCCTGTTCGGCAAAATCCCGCCACGCTGG 31246 29 100.0 32 ............................. TAAAACCGGTGCTGGATTTTGATGAAGACGAA 31185 29 100.0 32 ............................. CCATTCAACATCGCACTTAAGAACTTGTGCCA 31124 29 100.0 32 ............................. CGATATTTATCCAGACTGTCGGACAGGGTGGT 31063 29 100.0 32 ............................. CCTCATCGGGAGCCAACGCCGCGAGAATACGC 31002 29 96.6 32 ............................C AGCACAATCATTATTAGATGAACTTTCATCAA 30941 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAACAGTTTATAAACAACAATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGTCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATATGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGATATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //