Array 1 101912-101029 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZOC01000025.1 Escherichia coli strain HT2012003 NODE_38_length_346065_cov_28.466600, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 101911 29 100.0 32 ............................. GCGCGCGACTACTGCCCGACCCGCCGACAACA 101850 29 100.0 32 ............................. CTCCGACTTACCGTAGTGATGGCGCGCTGCCA 101789 29 100.0 32 ............................. TGACTGCGGTTCAAAATCTCCGGCACACGTCC 101728 29 100.0 32 ............................. GCTGTTTGTAAATTTAGAATTGCTGACTGAGC 101667 29 100.0 32 ............................. GAGAAAAATGCTACAAAAATGAGCTACGAAAC 101606 29 100.0 32 ............................. ACAAAACGCGATCAATACAGTTTTGTTTTGCA 101545 29 100.0 32 ............................. ATACCCCAGCGTTTCGTTATATGACGGAAGAT 101484 29 100.0 32 ............................. GGATTTGCATTAACGCGGCGTGAACATTATTT 101423 29 100.0 32 ............................. CTGCAATCACCAGCGGCGCGGCGTGGTTTGGT 101362 29 100.0 32 ............................. CGTCACCACGCGCGCTACAGGTAATGCAGCTC 101301 29 100.0 32 ............................. GGGATGAAATTGAACTTCCAGGCGACCGACAA 101240 29 100.0 32 ............................. ATTGATAACTCGCGCTCATCCATTTTGAATTA 101179 29 100.0 32 ............................. GCATATTTCATGCAGCGTTCTGAATGAGTAAG 101118 29 100.0 32 ............................. GCGTGGCGCGGGGCGTATTCCCCGGCGAGTAA 101057 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 15 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGGTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 118784-117413 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZOC01000025.1 Escherichia coli strain HT2012003 NODE_38_length_346065_cov_28.466600, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 118783 29 100.0 32 ............................. CCTCCCCGCTCACGCCAACGTTAAACGTTATC 118722 29 100.0 32 ............................. ATCCCCCGGTTATTGACCCCAAAACTGGTGAG 118661 29 100.0 32 ............................. ACTCAGTCAGCGCGTTAACCCCTTCACACGAC 118600 29 100.0 32 ............................. AATTTTTTATCCTCATAAACAGCCTCAGAAAA 118539 29 100.0 32 ............................. CGTTATTTACTGCTTTTTCATCCGCTCTGCTG 118478 29 100.0 32 ............................. ACTCCGATAGCCTGCTCAGAATTAAGGCGCAG 118417 29 100.0 32 ............................. CCGCCGATTTCCCTGGCGTCAAAAGCGGTGAG 118356 29 100.0 32 ............................. CTCTTTCTCAGTCATCTGGCGCTCAACGCCGG 118295 29 100.0 32 ............................. GCAGCAATTGCCGGAGTTTTACTAATTGCCTC 118234 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 118173 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 118112 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 118051 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 117990 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 117929 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 117868 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 117807 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 117746 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 117685 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 117624 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 117563 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 117502 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 117441 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //