Array 1 1067714-1066466 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP087763.1 Lactobacillus gasseri strain Lg637 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1067713 29 100.0 32 ............................. ATTACCAGACGCTAGGCCGTGTCCTGGGTTGA 1067652 29 100.0 32 ............................. TGGGCAACTTTGTTTTTGCGACGTTCAATAGC 1067591 29 100.0 32 ............................. AATACGAATCAAATGGAATAATACGAATCATA 1067530 29 100.0 32 ............................. ATCTTTCTCTTCTCCATAAGGATCGCAAGCGA 1067469 29 100.0 32 ............................. GAAATTCACAATAAAGCAAGCTCGACAATATA 1067408 29 96.6 32 ............................C AATCGGGTGAAGTTGCTGGAAACTGAAAAGAG 1067347 29 96.6 32 ............................C TACATTTTTCATTTTTATCTCCTAAAGTAAAC 1067286 29 100.0 32 ............................. TAAACAACTAGAAGACGAGAGGGAGTGTAAGT 1067225 29 100.0 32 ............................. ATCGAGAATACTTAATCGAAGTTGAAAAGAAG 1067164 29 100.0 32 ............................. TGCTTTAGAAATCCATTGAATCGCTTCTTTAT 1067103 29 100.0 32 ............................. TCTCCTTTCTACCCTGTATCGTTTTCCTCCTT 1067042 29 96.6 32 ............................C ACTGCTAAGGCTCGAAATTTAGCTGATGTGAA 1066981 29 100.0 32 ............................. TCCTCTCTCAATTTTTCATTCTCTTCTTGTAG 1066920 29 100.0 32 ............................. TATTGAGAGGTGAAAACATGGAAAAAAGTAAA 1066859 29 100.0 32 ............................. TACCCTGTCGCCATTTTCAGGAAGACGAACTG 1066798 29 100.0 32 ............................. GATAGCGTCATATCCTGAACGCTTGGCACTAA 1066737 29 100.0 32 ............................. CAAGTCCAGTTATACTATGAAGATGAGCTAGT 1066676 29 96.6 32 ............................C ATAAATTCATGGATAAATTTACCATGATTCTT 1066615 29 100.0 32 ............................. GAAAAAGAAGCCTGACGATGAAAAACAATTTG 1066554 29 100.0 32 ............................. TAACCAACTTTTGCGTCGAAATATCCAAACAA 1066493 27 93.1 0 .....................--...... | C [1066470] ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.0 32 GTATTCTCCACGTATGTGGAGATGATCCT # Left flank : AGCTGTCAAGTATATTAAGAAAAATGATCCAGAAGTTTTTTATAGATTGATAAAAGATATCCCAGAAGTTCCGGAGCATATTTCTAAATTAACAGGGTTGACAACTAAAAAATTACGAGATAGTGGTGTATCTTTAAGAGATGCACTAATTGAATTTAAAAAATTTGTTGGATCTCGACTAATAGTAGGCTATAATTTACCTTTTGATATGAGCTTTTTGGAAAATAGTATTAAGAAAGAAAGTTTAAATTCTCTGGAAAACAGAGCAAAGGACATTTTACCTATTGTGAAGCGGAAAAATAAATTCTTAGAAGATTATCATCTAGATACTGTACTGAAAAAATATGATATTGAAAACGAGAATCCACATCACGCAGACTCTGATGCAAAGAGTACTTGGTATTTAACAAAGAAATTGATAGAAATTAAAAGTTTGATAATTTAAATGAAATTGGCAAATTTTAGTAAATAAAATGCTGATTTGACGGGATTTTTTTAGT # Right flank : GATAGACAAATATATCAGCTTTTAGGCTAAAGTAAGAATTTTGTAGGTATAAAAAAATGAAAGTTAGATATGCTGGTGAAAGTTTTTATAGTGGGTTAGGTTTGGCAAATGGCAAGGTATATGTAGTTTTAGATAAAAAAGGACCTTTTTATAGAATAATCGATGATAGTGGAGAAGATTATTTGTATTCGAAGACTAATCCTGCTCCACTAGATGGTAATTCAAAAGGTGGGTATTGGAATATAGTTGAGTATTGAAAGAGCATAATAAAAACGCACTCATAAGCCTAATTTAAGCCTATCAGTGCGTTATTTTGTGTAATTCTAAATATTCTTAACAAATTCAGCGATTCTCTTTAATGCTTCTTTTAATTGCTCAGTTGAAGAAGCGTATGACATTCTTACGTAGCCTTGGCCACCTTGACCGAAGTAGCGACCAGGAGTTACACCAACTTTTGCCTTGGTAGCTAATTCATTTGCAAATGCTTCATCATCAGTACC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGATGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.50,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1079136-1079591 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP087763.1 Lactobacillus gasseri strain Lg637 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1079136 29 89.7 32 ..G....T......A.............. AAGTTAGTCATTGATTTTACAGCAGGGGCTTA 1079197 29 86.2 32 ..G.....T....G..............C TGGTCCTACACAGCAAATGGCGTTCACAATGA 1079258 29 96.6 32 .....................G....... AGTCCTAAAATGGAGCTTCAGCAGATGCTTGA 1079319 29 96.6 32 .......................A..... GGTAACCCATATTTCTTTCGACTAGATATCGC 1079380 29 100.0 32 ............................. TAGAATATGCCATTAATTCAGGTACAACACTA 1079441 29 96.6 32 ............................C GCTATTGCAACCTATGAAGGCGAAATGCTTAA 1079502 29 96.6 32 ..........T.................. GTAGCAGCAGAAGTTGAGGGAGCCATTTCAAA 1079563 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 8 29 95.3 32 GTATTCTCCACGTATGTGGAGATGATCCT # Left flank : TTGCGTAAGAGCTAAACTTGCATGTTCAGGATCGCGTCCTGTTGCAAAAGCATTTGGATCTGGATCAGGAGTAATATAAATTTTAGGAACAGGCAACCCCCCTGCTAAACAGAGTTCTTCAACAAGCTCATATATTTCAGGATCACTTTCTTTAGTGATTTCAACCGCATTCGTAACTTTCATTAAATGTTGAGTTGCATCAAAGTAAACGTGCGAAATATAAATTAATCCGATAATAAAAAATCCAATTCCTACATATGAAGTAAAAATCATTCCAAGAAAAATACTTAATACCAGTATTAAAACTGTATACAATCCCAAAATAATCCATGTATTTCTCTTATTTTGTTCTATTTGTTTATATAGCATTTTTCACTCCAACTATTTATGCTAAAAGTCTATGAACTAATTATACAAAATTTTCAATTGATAATACCTAAAATGACAAAAAATGCTATTATTTGAATTAAGGATGACTGATAAATCACGGATCTTTTAGT # Right flank : TTCATTCAAAACAGTATATTTTTCATAAATAAAAGTGTTCTCCACGCATGTGGCATGTGGAGGTATTAAAAAGGTCTGTTATCATCAAGTAACAGACCTTTTTCTTATTTAAAATATTCTAATTTGCCAAGTAAACTTTGATTATCAACTCCAAGTTTTTACCATCCCAATGGAAGTTTTTTACTCGACCAAATAAAAGATTACCGGAATCAATCAAACGACTAAAAATCAAATTATGTTCACATGGAATATAACCTAATTTTAGCCCAGCCGGTGTAGCTACAGAAATAGCATTTTTGTCGTACTTATTATCAGCCTCACGTATTAATAGAACGGGATCATTCTCTTTTAGACGAGGAACTACCTTATCTTCAAGATGTAAATAATCAGAACCACGCACTTCACAACCATATAAAAATGTGCTGTGACTTTCTCCTGATTGTTTATAATAGATTTTTTTCAAATCAGTAACCTGATTTTCTAACTTATCAATTCTATCC # Questionable array : NO Score: 5.49 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGATGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-10.50,-10.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 1081173-1080808 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP087763.1 Lactobacillus gasseri strain Lg637 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1081172 36 100.0 30 .................................... AAACCATCTCATCGTTGCTCATCATCCTAT 1081106 36 100.0 30 .................................... CCAGAACTAGCACCACCGTACCAGACTTCT 1081040 36 100.0 30 .................................... TGACTGTAGATGAAAATGTAGTTACTAGTG 1080974 36 100.0 30 .................................... TGACTGTAGATGAAAATGTAGTTACTAGTG 1080908 36 100.0 30 .................................... CTGGAAGACCATGAAAGCATTCCACACAAG 1080842 35 91.7 0 ..........................A.....-..T | ========== ====== ====== ====== ==================================== ============================== ================== 6 36 98.6 30 GTTTTAGATGGTTGTTAGATCAATAAGGTTTAGATC # Left flank : AATCAAAATATTTTTGACAAGTATATGCCCGTAATTATAAAAGGATACATTGAAGGGCTTAATGAAGCGGATCGTAATGAAATATTAAAAACCTACCATAAACTAGAGGGGATAATTCAAGATTCACTTCTACTTGAAGATCTACCATTAGAACTTGAATTTAATGAAGACTTGAAGAAGTTCTTAAAGATAGAAAATCTACATTTAGATACTAAGTTTTTAGAAGAGCCATATGCTATAATTGAATCGATCTTAAAAATACATCAAAACTATAATCTTCATTCCATACCTGTTGCCTGTAATGTAGCTCATTACTTAAATCTAACCCAGTTAGGAATGTTAAATGATCTATTAAAAGAAATGAGGTTGAAATTGATTTTAATAGAATTCACATCTGCGGATTTTCTGGTTTTTCCAAAGGATGTTGATTATTTCTACATTGATCAAGATCTTGTTGATTGGTACTAACTATTTAATTAAAAACTGATTATAAAATTTCG # Right flank : TGTAGTGAGTTACGTTAATTAGTCGTAATTACACTACTGGTCCATTGTTTTTCAATGGGCCTTTTTATTATATTCCGAACCGTTTTTCACCTCTTTAGTGAAAAAGTGTATTTTAAATGTAAGTGCTGTTTAATACCATATAAGTGTTAAGAAAAATAATATTAATGAAGAATTTAAAAACGACTAAGAATGTTTCATTGATATTGCATCATCAAATTTTATGGCTTCTAACATGAGAAAAGCAGCAAAGAGGACTGGATTAGATTATAAAATTCAAGCTCGAGGTGGAGTAAAATTAGGTGACAATGTAAATCAAATTAATGCCTTGATGGTGGGTCCTCACTTAAAGTCAGAATTTGATGCTATTAAGACACAGGTTCCTGATAAAATAAAAGTAATTTTAATTAAACCAAATTACTATTCAATTTCTATTTGATTTTATGGATTATATGAAATTAGATAAGCAAAAGATCATCGCAGATCTTTTCCTCAGGGCGCGG # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATGGTTGTTAGATCAATAAGGTTTAGATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGATGGTTGTTAGATCAATAAGGTTTAGATC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //