Array 1 413212-413662 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJLL01000001.1 Akkermansia muciniphila strain GP02 scaf-1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =============================================================== ================== 413212 31 100.0 34 ............................... CTGGCACAACGACGCCTCCCTTGTCGTCAAGGAC 413277 31 100.0 35 ............................... CGTAATGCCCCCGTCGCTGCTCTGGGTGGTGGTCT 413343 31 100.0 35 ............................... TTTTTATTCTTTGTGCCTGATGCAGATTCCTCCCC 413409 31 100.0 63 ............................... TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 413503 31 100.0 34 ............................... ATTTACATTTACCGTTCCGCTCGTAACGACAAAA 413568 31 100.0 33 ............................... TATATTCGGCCCATGCTTCGGCAATGGTTTCTT 413632 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== =============================================================== ================== 7 31 100.0 39 GTCGCACCCTCACGGGTGCGTGAATTGAAAC # Left flank : ACTGCCCTGTAAGAGCGAGGCAAGCTTCTTCTATTGAGCCTTAAACAGGAACCGTCCGTAAGGGCGGCTCCTGTTGCATGGCGGCGCAAGAGGAAGACAGGTCAGTTGACTGCCGTTAGGGTGGCAGCAAGGCATGTATATAGATCCGGATATTCCTGTTTTCCGGTAGGTGAATTACTGGTTTTGTGAAGGAATGAGGAAGATGTTTCTGGACGCAGTAAAAAAGAACGGTTAGCATCAATGAGCCAAATTGAGTGCAAGCTGGCTCGGACGTGAAGTAACTGAGGTTTTCTAAGATGATGCCACATCGGATGCTGCGCTTGCGCCAACCTCAAGCTCACAGAAAATTGCCGGGAATCCGGCGCATGCTGTAAGCGATTGAGAAATGTAGCTTGACAGAAAAATTCCCTTTGATCAGGCCTGGCCGCATCCGGTTCTTGCATCAGGTTGGCGCAAGACCTTTGTTGCATGTTTGATACTCAAACCGTATTCGTCAGGCC # Right flank : CAAGGTATGTTCCATGCGACGCACAGTTGAGGAATGACAGGAGAGTTGATATAAGTTGAATCAGGGTTGAAATCCGTTGGAACCCTAGAAAACACGGGAGTTAAGTAGGAACAGGCCAGATACGAGCTATCTTATAAAAGTCGGAGCTAAAAAGAGGGCAGATGACAGGTATCTGATATAAGTACACAAGCTATGCAGGGATGCTGCACAAGAGCTGCAAAGGGTAGGTGATAGAGAAAACGACAAGGTAAAAAATCATGATAGGATGTCCCGCATGTGTACACCTGCATATTGCATCCCCTTGTATGGCTCCATGACAGTTATCTCGCCCGAAGACCGAAAGAAAAAGAATCCGCAAATTTATCATCTCCATGATACCGCTGTCGTGTTGATGTGGACAACTCGTGAAAGAAGTAAGACGACATGCTGGGTGCGGGATGTACTCGACAATGTGTGGATTGTGATCAGGAACGAAAGAGAAGATGATTGAAAAGAAAAAG # Questionable array : NO Score: 8.96 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:-0.29, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTCACGGGTGCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.20,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.74,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 446913-447527 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJLL01000001.1 Akkermansia muciniphila strain GP02 scaf-1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ================================== ================== 446913 31 100.0 34 ............................... CGGGTCTTCGTCATCGTCCAGCCCCCGGTCCGTC 446978 31 100.0 34 ............................... TCCTTTCCGTCGATGATAGCCTTTAATTCACCAA 447043 31 100.0 34 ............................... TGTGTCCTTCTCATCGTCCCCCTCTCCCGTGTCC 447108 31 100.0 34 ............................... CTGAAACAGGCGCGGGACGATAAAAACATCCCTG 447173 31 100.0 34 ............................... GATGTATTGGAGGTGGGCGTATCCATAAAACATG 447238 31 100.0 33 ............................... AGCAGGGATGGGCGTGTGTCCGATGTGCTGGAG 447302 31 100.0 34 ............................... GAGTTTGAAATGGATTATCGCGGCGACTACAACT 447367 31 100.0 34 ............................... CGTGCTTGCCGTGGGGAGGGCGCAAAAAACGGCT 447432 31 100.0 34 ............................... ACGTTGATTTCCCGGTCTGTCAACTACGACGGGA 447497 31 87.1 0 .........A......C............GT | ========== ====== ====== ====== =============================== ================================== ================== 10 31 98.7 34 GTCGCACCCTCACGGGTGCGTGAATTGAAAC # Left flank : GAGAGGCTGGATAGCCAGACGTCTTTATCGGGAGATGGATTGGACGCTCCTGGATGACCGCGCTCCGGAAGATTGGACGATTGGACGGGAGGTGTTGGCCAGGGTTCCGGCAACATTGTGCCGCATTGATGAGCCATGGCGCAAACGTTCCCCGTGGAGTGTATGGACGGCCTGGTGCTGGCCCAGCCGCACGGTAAGCGCCGAGAGTTACGCGGCCAGGTTTGCCGTGGTGATTACCGGCAGCCCCCGCATGCCCGATCAACCCGCCAGCGAGCGGGCCAGGGTGATGCACCTGCTGGCCGACGCCAGGGAGAGGATGCTCCGGGAGGGTGTGGTCAGGGAGGACGACGAGACGGTGGATTGGGGTGACCTGCTGGCCGCTTGTAAGGGGGAGGCAGAGTCGATGCAGACCCCCTGCACGGAGCTGGCAGACAGACAAGTTATATAAGATACTTGTCGTAGTTCTATCAGATGTCTTGGCGCGTTACACAGTAAACCCG # Right flank : TTTTTATGTATGTTTGACATATTTAAATACGAATCGTTGTTTTATTAAGGGAGGGAGATATATTGAAATAAGGGTATTTGTTGCTGAAGAATGAAAGATGGATTTTTGTGTTTTTTGTTGAATGCAATATTTTGACGGAGGAAGTTGGTTTTTGGCTGATAGAGGAGAAATGACGGGAAGTATTATTGGACGAATATGAAAAGATATTGTCTGGTTTCCGGGTTATGTTTGTGCTTGTTCATGGGGATATTTTCATGTATTCCGGAAGCTCCGGAGCATAAGACGGAAAAAGATGCCTCAGCCATTGTTCTGGATGAGGATTCGGATATAATCTGGAGGAATTTTTCTTTGGGCCGCGTTTCATTCGATGATAAGGCTCCGCATAGTAAAGGTTCCCGCATTTTTCACCGATTGATTCCAGATACGGAGGTTTATATCCATCAGTTGTCCCGTATTGTTCTCCATACGTTGTATGAGAGTCCTGAAGAATGTATTGTTCC # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTCACGGGTGCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.20,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.15,0.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 35845-35544 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJLL01000003.1 Akkermansia muciniphila strain GP02 scaf-3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 35844 37 100.0 29 ..................................... TAAATTCCCTGATCCGCTCATGCTGAACA 35778 37 100.0 29 ..................................... GAAAAGCTTTCACAGTTTGCGGGCCACAG 35712 37 100.0 29 ..................................... AAGCAATTTTTATACGGTCAATCATCAGG 35646 37 97.3 29 ....................................T TTCGGCGCGCTGGACAAGGGGTTCAATCG 35580 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================= ================== 5 37 99.5 29 ATTGTACTGTGCCTTATTTTGGATTCAAGGCAAAACA # Left flank : CTGTCATGTACCGGGATAAACAGCTGCCGTTGAAAGCGGCGGTAGAGGCCGTTTGCCGCAGTTTCCGCAAAGCAGTTCTTGCCGGACAATCCGGACCGTATGAACCATGGCTTATGACAACTATAAAATGGGCTGGCTAGTTGTGTTCTTTGATCTTCCCACAACCACGCCGGAAGATAAAAAAAACTATCAATATTTCCGTAAGGCTCTTTTAGAAGACGGCTATACGATGATTCAGTATAGCGTCTATGCCCGCGCGTGCGTTACTCAGGAAAGAATGGCTACCCACTCCCGCAGAATCCAGAAAATGATACCGCCTGATGGTTCTGTCCGCTGTCTTTTCGTTACGAATATCCAGTGGGATAAGATGTTCGTTTTTCATGGCAGGTCTTGTCCCCGACAGGAGGTTTCCCTGCCTCAGCAGATGCTCCTCTGGTAAAAATATCGGACGCCGTATTTTTTTATAAGTCGCTGAACATAAAAATAAGGCACAGTATCTA # Right flank : AATGCGCCTCCGGTCTGATGGCGCAGGGGATTGCTCCGCCTTTGGCCACGCAATTCCAGACGGATTTTTGTCAGTCTTCCTTTAACGGAGCGGGAGAAACAAAGCTGTGCGTCCAGAACATGGCGCCGGTTGCGGAGGTGATGCCCTCCATATTAAGATAGCGGGCCAGCAGCAGGGAGGGGGAGGAGTGTCCCATCTCCTTCTGGAGAAGGTTTTGATTGCAGAAATGGGCCAGGTGGTAGGAGGCGTAGGTATGCCTCAGCACGTCCTGAACCCATCCGCTTTTTTTCAGGATGCCGGACCGGCGCCTTACTTCCCTCCATTTCTTTTCCCAGTTGGGCGGGCAGACGGAACGGGCGGGGGAACCGGCGGAAGACATCCGGCTGAGGATGGAACCCAGCACGGGAAGGATGGAAACATGGCGGCTCCCTCCCGTTTTGGTATGGGTGGGCGCCAGTGAAACTAGGCCGGATTTCAGATTGATATGCTTCCACGTCAGC # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGTACTGTGCCTTATTTTGGATTCAAGGCAAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.30,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA // Array 2 105973-103922 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJLL01000003.1 Akkermansia muciniphila strain GP02 scaf-3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 105972 33 100.0 35 ................................. TGTGTTCAAACCTCGTTGCTTTACCCAAGCCTAAT 105904 33 100.0 35 ................................. TCCTTACGTTGTTTTACGAGGTATCATCCTCTCAG 105836 33 100.0 35 ................................. AACGTCCAGTTCATCGTAACAATCCTGTTGTGCTA 105768 33 100.0 34 ................................. TGCATGGCGATCTTCATTGCTTCCAAGCGGGAAA 105701 33 100.0 34 ................................. ACGAACCATAGCAAATCTTCCATTGACGATTGGA 105634 33 100.0 34 ................................. CTTTTCTAATTTGCAACGATTGCAAATTTTTTTC 105567 33 100.0 34 ................................. TTTTTCTGCGCCTGCGCCGCCCGCTGGACTTCCA 105500 33 100.0 34 ................................. ATCGTCTATGCCGTCTTTATAGGAGGCGGCGACT 105433 33 100.0 34 ................................. CTTTGAAAGCGCGCTCTATGCGCTGCCCAGGAAA 105366 33 100.0 34 ................................. CGGTCATCCCTCGCAGCATCATCCTGCATTTCTG 105299 33 100.0 35 ................................. GCCGCCTCCTTCCTGTTCTTCTCCTTCCGGGTATT 105231 33 100.0 34 ................................. CCGTTGGGCGGGTAACAATCGCAATATCCTATTA 105164 33 100.0 35 ................................. CTTTTGCCAGTACGGAGGAATGCAAGGCCCTTCTT 105096 33 100.0 34 ................................. AATAACTCTACACGATATTGGAGGGGTAGCTCGT 105029 33 100.0 34 ................................. CGTTTTTCCCCTCGAAAAGTATTTACAGTTTTCA 104962 33 100.0 34 ................................. CACATACTTGCGCCCCGCCCGGACAGCTCCAAGC 104895 33 100.0 34 ................................. ATAAACTTTTGTTTTTTGGATGTACAGCAGCACG 104828 33 100.0 34 ................................. TTACTCTTCCGCAAAATTGTACCAGCGCATCTAC 104761 33 100.0 34 ................................. CGGAGAGTGGGCACGGCTAAGGCCCGTGAAATTG 104694 33 100.0 34 ................................. TCCATTGCCGCCCTGCATGCTTCCCCGCATTCTT 104627 33 100.0 35 ................................. TTAGTTGCCGCCAGGGCCTCTTCCGTCAGCCAGCC 104559 33 100.0 34 ................................. AATAAACCCGTACAGTTCCAGCGTGCCGGAAGGG 104492 33 100.0 35 ................................. CTCAGCATTGCTAATCCTGATAACGTCAACCAGAA 104424 33 100.0 34 ................................. TCCCGGTGCTGCCCGGTTCATGGCTGCCACCCTT 104357 33 100.0 35 ................................. ACACGTTTGCAGGGCCTGCCGGGCAATGGAATTAT 104289 33 100.0 34 ................................. GACCTCAAAAGCGGCCAAATCCGCAACTACTGGG 104222 33 100.0 34 ................................. CGCCGAAAACGTCCCGCAAAAACAGCTCGCAGAG 104155 33 97.0 33 ............G.................... GACCATATCCCCCCAAGGGAATTTTAGAAAGGA 104089 33 100.0 35 ................................. CACAGCCTCCGGGCGACCGCCGTGACCGTCCTGCG 104021 33 100.0 34 ................................. TCCATGATGTCCCGGTCGGAAAATCCAAGGTCGC 103954 33 93.9 0 .....................A....C...... | ========== ====== ====== ====== ================================= =================================== ================== 31 33 99.7 34 GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Left flank : GCGGAAGAAATGGCACCTGCAGCAAACCCGTTGACGCTGTCATCTTCCGGAGAAGAGTAGGAGATATCCTCACCAGAAAAATTCTGCGACAGATCCGTAAAAAATGTAGTAGCGGCAACAGCACTGCCTTGAAGAAGCCCCCCCAATAAGAGAGAGATAAAAGTTGAAAACTTCATATGCGACATTGTGCGGATTAACTATCCGTTGGGAAAAAACAGGTATTGCACAATGTTCTCAAAAAATGATGAACAAATATCGTAATTAATTGAAAATCAAATTATATCTATTATATATCATGGAATTTGAAATAAACTCGTCCAAAAAACATTCACAGATATTTTCTACGATTTGCCAATCTGTTTTTTCTGTCTGTGAATCTGCATAAATTCCTTTTTTTTAAAAAAATAGTTTGACAGCGGATAGTTAATCCGCNGTCGCACTCCGCAAGGAGTGCGTGGATTGAAACTTTTTCTCTGACAAAATGAGGTCGGAGAACGGCT # Right flank : ATGACGAGTGCAAGCTTCGAGAAGATGCCACCCGCCGTACTCTCCAGGGAGTACGTAACTTATCTGGAAAAGAAAAAGCTCTCCGAACTTGTTTGGTCTAGAGAGCTTTTTTTGTTCCATCATCTTGTTAAGTTGTCAGGAAGAGGGGTGATTATTGAGATTGAGTTCTGCCGGGGGGAGGGACTGGAGCAGAGCCAAGATGGGGTCCTGCGGTTCGGCGCCCATTTCCCGCTGGCGTTTGAATTCCTCCTCTTCCTGCTGCAGGGCTGCCAGTTTGGTGTCTTCCACCAGCGCTTTGAATTTGTCCGCCTGAGAGTATTCTCCGTCCTCGTCCCGGAAAACGCGGGCCAACCAGCGGCGTTTTTCTTCCGTACTGAGCAGGGGATTTTTCATGTGCCGGGGAATGTATTTTTGTCCAGCAGGTTTCCGGCAAGCTGTTCTCCATCCGCAGTGGGCCGGTAAACATAAGGGCGACCGTCTCCAATACGGTTGACATATCC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.90,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.15 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 605-31 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJLL01000011.1 Akkermansia muciniphila strain GP02 scaf-11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 604 33 100.0 35 ................................. CGGCCATAAACGTATTGCCGCCCTCAAAAACGTTA 536 33 100.0 34 ................................. TCATCAGTGCCAGCAACGATGAAACCCCCCTCAT 469 33 100.0 34 ................................. AATGATACTGTGCGCGTGGAAACCGGGAAAATCG 402 33 100.0 34 ................................. CCGGTCAGTCCGGGCTTGTCACGCCAGTAGTCCG 335 33 100.0 35 ................................. CGGCTTCATCGACGATAATCGGAACCTTGAAGCCG 267 33 100.0 36 ................................. TACAATGCGGTATCTTACAGCAATCCGGTGGTATTT 198 33 100.0 35 ................................. GTTTTTTTTGTTTGGTATATCTTTTTGCTTGGTTA 130 33 100.0 34 ................................. TTTTTCTCTGACAAAATGAGGTCGGAGAACGGCT 63 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 9 33 100.0 35 GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Left flank : CTGTTGTCATGTATATTCTCATTACGTATGATGTAGCTACGGATGACAAGGCCGGGCAGCGGCGGTTGCGGCAAGTTGCCCGAGCCTGTGAAAATGTCGGACAGAGAGTGCAGAATTCCGTATTTGAATGTGAATTGCCTCCTGCTCAATTGGTTGACATTAGGAACAAGCTGCTTAAGATTATTGATAGCGAGAGTGACAGCCTCAGAATTTATCATATGGGGTCCAATTGGCATCATAAAATAGAACAATTGGGTAAGGAGAAAAGCTATGACATCTCCGGTCCCTTGATTATTTAAAGACTGTTGAACATGGCCTGTGCGCCAACCTCAAGCTCACACGAATTCCCCGGCAGGTCGGCGATTGGTGTAATGCATTGGGAATAGAAGATTGACAGATAAATACTCAGAAAGAGCAACCGTGCAATGACGGTCTTTTTAGGGAGGTTGGCGCAAAGTATGATTTGCTCTGTTGAGTAGCAATGTATAAGGTCGGGCGCA # Right flank : CTGTGTTCAAACCTCGTTGCTTTACCCAAGC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.90,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [26.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.01 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 9372-9076 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJLL01000011.1 Akkermansia muciniphila strain GP02 scaf-11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ======================================= ================== 9371 31 100.0 34 ............................... TTTTAAATCAGTTCCGGTCTAAAATCGGCGTCAT 9306 31 100.0 34 ............................... GTCCTGTCAAAATCCGAATTTGCAGAACATTCCC 9241 31 100.0 39 ............................... ATGGGTGGACTGCATCAGGCTTCTTGGAGACGACATGGA 9171 31 100.0 34 ............................... CGGGTGGTCGGTCCGCGTGGCTCCCTTTCCGGCT 9106 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ======================================= ================== 5 31 100.0 36 GTCGCACTCTCATGAGTGCGTGGATTTAGAT # Left flank : GCCGTGAAAATTCCGTTGATGGCCTGTCTGGCCTCCGCTGTCTCCGCGGCGTTGGTATGGCTGTTGAGCCTGAACAGGTGGACGCGCAAAAGCATCATGTAAACCGCGGATATTTTCCGCAGGGCGCTTCGGGACCACGGCTATCCCGGGGCGCCTCTTCTTTTGTGGAAAACAAAATAAAACGGTTTCCGGGGAGAGGCCTACAAAATTCTGGACGGGAAAGAGGGAACAGGTTAGGATGTTTCCGCATCGTGCACAGGCTCTGGTTGCCGGAGATGCGGGCTTTTTAACGCATGAAAAGCTCCTCTCCCGGTCTTCCTTCCGCCGACCCCAAGCTCACAGGAAATTTCCGGAATACCGGCGATTTTCGTAATCCGTTGGGGTTCTGATCTTGACAACTATCATCTCTTTTTACGACCTGGAATCTTTGTACCTCCCATGGGAGGTTGGCGCAAAACGCCCGTTGCACTGTTGGTAATCAGTGCCATAGACGCCCAGGA # Right flank : GTCGTAGATTGAACGACCTAATATCCCTAGAATGAGAAGGAGCAGTTGGCTATAACGCTCATTAAAAACACCCTTCATTTTTAGCGAAGGGTGTTTTGACATTCGTGAAAAGAAACAGCTCAGAAGCCTTCAATCATTTCCGGGGTTAATCCCGGTAGATCATATTTCTTTACAATATTTCCATCCTCGGAGATTTCAATGGAGTGGTGGACTTTCGCAGAAGAGTATTGACCACTTTTACAGTTATGCTCCCACCAAATGACTTTTTGAATAGACATGCTGCCTTCCGGTCGAGCAGAGGAGGCGTCTCCTTCAAACATCTGAGGAAGCACTTGTTTGAAAATGGAGGCATCTTCATCCGAGAAGCCTGTGAGTTCTGCCAGCTGTGGATTGATTGCTCCAAAGAAGACATAGGTTCCCTTGTCCACCCTGTGCTTCATGCCCATGGTGTCGGAAGATTTTTTGCTGCCGTCTCCGTCATTGCTGACACTTTTCGTAAT # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTCATGAGTGCGTGGATTTAGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.61%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.70,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [55.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //