Array 1 6063-9661 **** Predicted by CRISPRDetect 2.4 *** >NZ_VUNM01000013.1 Sharpea porci strain CA-Schmier-601-WT-3 seq13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 6063 36 100.0 30 .................................... TTGCTATCGTTTCAGTATACATGATACTGA 6129 36 100.0 30 .................................... TGAAGCATATCCAGCGTTTGGAATCTCGTC 6195 36 100.0 30 .................................... ACTTGCTGAATTATTTGACGCTACTGTTTT 6261 36 100.0 30 .................................... AATGGATGGTTGTCATCGACATGGCGACAA 6327 36 100.0 30 .................................... TTCTAAAATATCTAGTATAGGAGTTAATCA 6393 36 100.0 30 .................................... ATGAGTAACCAATATTTATACTTAATAGAA 6459 36 100.0 30 .................................... GGTATCCAATAACCTTCATCAAAAGGATAA 6525 36 100.0 30 .................................... ATTGGATAAAGAGTATTTAGAATGGCAGTT 6591 36 100.0 30 .................................... GCTGATGAACACGCAACTGGTGTTGTTGGC 6657 36 100.0 30 .................................... GCCTCTACGTTATTATACGTGTTACTCCAG 6723 36 100.0 30 .................................... TATCTACGATCCTGACGCTGTGGCTCTGTA 6789 36 100.0 30 .................................... AGGAGTGAATGTTATGAAACTGACAAGAAG 6855 36 100.0 30 .................................... AAAACCATAGGTAATTAAATCAATATCATC 6921 36 100.0 30 .................................... AAATTGGGCTATCAAACTACTGCGACATTG 6987 36 100.0 30 .................................... AAACTACGAAATATACGTTGTCGATAGCAA 7053 36 100.0 31 .................................... TCCAGTTCCTGGAACTCTGAACGATGCAGCA 7120 36 100.0 30 .................................... TGCTATATGAACCAGACAACACAAAACATT 7186 36 100.0 30 .................................... TAAGCTGATTGAATACATTGGTTGCACTGT 7252 36 100.0 30 .................................... AAAACGTGTCGATATCACATCTGTTAATGA 7318 36 100.0 30 .................................... TTCCAGACATGCTTCCATACGCATATCTTA 7384 36 100.0 30 .................................... AAAAAGCTTATCAGCTATCTTGAAGAAAGG 7450 36 100.0 30 .................................... GAAGTGGGAGTCGTTCAGCGAGTCAACTGA 7516 36 100.0 30 .................................... TGATGGAACACTGAGAGAGTTCCTTACTCT 7582 36 100.0 31 .................................... TCATACCAAAAGACCGTGGAAATTATGAATA 7649 36 100.0 30 .................................... GTCTCATGAAAATCATTGACGCAATTGGAA 7715 36 100.0 30 .................................... CGTATTAGTAAGTTGAATGATGAATTAGTA 7781 36 100.0 30 .................................... CCTTAAGTTCCTCAAGCGTGGCACTCATGA 7847 36 100.0 30 .................................... ATAAGATAAGCCGTTATGGTAGATACATGA 7913 36 100.0 30 .................................... ACCAGCACATAGATTTAATTTAACTGTTGA 7979 36 100.0 30 .................................... TTTATATGCCATAAATAGAGTATAATTAAA 8045 36 100.0 30 .................................... AATAGTACAGAGGAGGAAACATGAACCGAA 8111 36 100.0 30 .................................... CCTCGTGTACTGTTATTGATTGATGATTAC 8177 36 100.0 30 .................................... TTTGCTGTGCAAAATTCACCCCTCACGCCA 8243 36 100.0 30 .................................... CAGCAAAGAATCTCGTTGATGAGTCAACCG 8309 36 100.0 30 .................................... CCTTGGCTTCGTGAACGCCTGGAACAGGCT 8375 36 100.0 30 .................................... GATAAGAAGAGCAATCGCAAGCAGCGGAGC 8441 36 100.0 30 .................................... TTTCAATGTGACTATTGATGATTTAGTGAA 8507 36 100.0 30 .................................... GAAGAGGGAGACGAAGTGGGAATGGAGGCA 8573 36 100.0 30 .................................... ATATGTCATGTCAAGCTTTCCATGCATTCC 8639 36 100.0 30 .................................... GGGAATTACCGGAATAGAAGACATAGGATA 8705 36 100.0 30 .................................... TCAAGGCGGCGATCCACAAGGCTAACGCCG 8771 36 100.0 30 .................................... ATAGAACTCAAAAGCGAAAATATCACTTTA 8837 36 100.0 29 .................................... AGTGGCATATTGCCAGCTTCTCTTCCATC 8902 36 100.0 30 .................................... ACAAGGCTTCTGATATAATTAAGAGACTTA 8968 36 100.0 30 .................................... GAAGGTTCAACAAATATGCTAAAATCAGCA 9034 36 100.0 30 .................................... ACTTCAATAATACGAAACTCAGCTATAAGC 9100 36 100.0 30 .................................... AAAAGGAAACCATCAAGCGATTGTATGAAG 9166 36 100.0 30 .................................... TAATTGCTTCACTTTGTTTAGGATTGTCAA 9232 36 100.0 30 .................................... TTTCTACTTGTTTCATAGACTTAGCCATGA 9298 36 100.0 30 .................................... CTCTCGCCGTAATTGAAGTCCCATGTCTCA 9364 36 100.0 30 .................................... TAAAAACAGTGAGCCTATATGGATACGAAA 9430 36 100.0 30 .................................... CGCCTGGTTTATTCAGCGACTTTTTCCGTC 9496 36 100.0 30 .................................... TCATTCACGTATTATCTGACGGTACTGTCA 9562 36 97.2 30 .......G............................ TGGGTGATTGTTTTATGAACCCGATTGAAC 9628 34 88.9 0 ...................A...-.C...-...... | ========== ====== ====== ====== ==================================== =============================== ================== 55 36 99.7 30 GTTTTAGAGTTGTGTTATTTTGGACTGAACTAAAAC # Left flank : TATCTATACAGACATACAGTCAAAGATTATTGATGATGGAGATTTAGACATTGAATTCAAAGAACATATCCAATTTCTTAATCAAATCATAGAAAATAGTTTAGAAGACTATAATCTTGATTTCGATTATGATCAGGAACTTATTGTTGAGAACTATCTAAAAGCAATTGGATTAAAGGTTGTAAAGAATATGGATGAACCATTGTATAATACATTCATAAATTATCTTGAATTAATCTCAGAATTACTTCCTGATTCAGTATTAATCATAGCTAATTGTCTAGAATACTTTGAACATGATCAAATAGTAGAAATCTGTAAATATAAAAATTACAAGCATTTAAATGTTTTGTTTATTGAATCTTATTTAAGTAACTTTGATGAAGCAACTAAATATATTATTGATGAAGATCTATTTCAAGTGATAGAATAATTACAAATCAGTTCATGATAACTAGCTTGTCGTTGGGCGAAAAAAACTCTAAATACATCAATTTGAG # Right flank : CCTATGTTTTACACTTGATGAAATTAACAGCAGTTTGTGGCTATAGAAGAGTTGTTTGTTTTTTCTTTTGTGCCTAGAGAAGATGATGATGTTAGGCTGTCATCTTGTTTAATTAATGATGAATGATAGGTTGGTGGATTCTTAGCAAATATATGTTTGTGACTGTACTTCAATTGTTTGCTTTGCTTCTTATTCCTGTAGAGTCATTTCGATTTCTTCTAGAATATTTAGTGTACACCTGTTATTTTCGAAATAATCAGATACTCTTACTGTTCATGGAATAAGTAGAATACGATGTTTATGCCTATTTTTACTCAAGAAATTGCCATTATCGATGCACTTGCTTACAAGGCAAAAGAAAAGATGTACGATAAGTTATAGAAGGAAAAACAAGATGACATTAAATAATAAATTGGGTATCACTGATTCTGTTGAATTAGCTAAAGTGGAAGAAAGGATCAGTAAAAGAAAAGCAGTAGAACTCTTTGAAAGTGGCATTT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGTTGTGTTATTTTGGACTGAACTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.20,-0.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 64651-66276 **** Predicted by CRISPRDetect 2.4 *** >NZ_VUNM01000007.1 Sharpea porci strain CA-Schmier-601-WT-3 seq7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =============================================== ================== 64651 31 100.0 42 ............................... TTTTGGAAGAGGCTTTGCAAGCCTGAACACCAGTGCTTCCTT 64724 31 100.0 39 ............................... CTTTATAATTCTTACGCAAGCTATCCCACATTCTGATTA 64794 31 100.0 36 ............................... GCAACCCGTTTCTTAGACTGTAAAAATGCACTCCCT 64861 31 100.0 47 ............................... ATGTCAATAGATTTTTGATATAAATTTAATTATTGTTTTTTTGTTGG 64939 31 100.0 37 ............................... ATAAATGGATTTGTCAATAGTAGAAACGTTGACTAAT 65007 31 100.0 34 ............................... GAAAAGCAGTTCCGGTCCTTCATGGACGCTGGCA 65072 31 100.0 37 ............................... TTTGATATTGTGACTTATGGTTTAGTGACCACTTGCC 65140 31 100.0 40 ............................... CAGAGAGTGACACTTCATTTCAGAGTGGCACGGTGACAAT 65211 31 100.0 41 ............................... TTTTATCCATGAATGTCTTGTAATGTCTTGTTGATTCATGA 65283 31 100.0 37 ............................... GATTTAGTCAAGCTCGTTTCTTTGACAATGTCTTTCG 65351 31 100.0 37 ............................... TGTTCAAGTCGCTTGCAGTTCCGCTTATATTTGTAGT 65419 31 100.0 39 ............................... ATAAAATCAGTGTTTTCTTTGCTCTCGCTGATAGCTAAA 65489 31 100.0 35 ............................... TATGTTATAAATATATAAAAAGTGTTGATTTTATC 65555 31 100.0 41 ............................... CTTCGATTGTAAATGTAGATGTTTTCATAATATTTTGTTTT 65627 31 100.0 37 ............................... TCAACTCGGTAGATATTTCCTTTTCTATCTTCAATTA 65695 31 100.0 38 ............................... TTTGATGACATTGGCATAATGTCAACTACATCATGATG 65764 31 100.0 35 ............................... CTTAACTTTTCTAAGTGTCTGTTAATTCGGTCTTT 65830 31 100.0 38 ............................... TGTGTTATCAAGTGTTAATGTCGTGACCTGCCCTGCCG 65899 31 100.0 38 ............................... TTGCAACTAACAAGGCTAGGATAATAACCTAGTCTTTT 65968 31 100.0 38 ............................... AGAATTTTTAAAAGTGTCTTTTGTATCCTGATTTCCTC 66037 31 100.0 38 ............................... TTGCAACTAACAAGGCTAGGATAATAACCTAGTCTTTT 66106 31 100.0 35 ............................... TCTGCATTCTTTCCTTGTGCTTCCTCCTTTATCAT 66172 31 100.0 43 ............................... TCAACATGATTTACTAACACTTCCGTGACATACACTTTTTTTC 66246 31 96.8 0 ............................T.. | ========== ====== ====== ====== =============================== =============================================== ================== 24 31 99.9 38 GTTAGATATCGTTCTTATAAAGGATTAACGC # Left flank : AGAAGTCTATAATCTATACAACTATATAACTGGAAAGAAAAAATTCTATAAGCCATATAGAATGGAGTGGTAAGCATGTATGTTATATGTGTTTATGATGTAAATGAAAAGAGATGTCCTAAGGTCATGAAAGTACTTAGGAAATATCTCTTTCATATACAAAATTCTGTCTTTGAAGGTGAACTCACCCCGGCAAAGTATAAAATTCTTCAAAAAGAATTGAATCAAATAACTGCTGATGAAGATCAAATCATATTTTATTATTCTTATTCCAACAAGAGTATAAACAAGATTGTCAATGGAAAAAGGGGCAATCAGCATGAAAATATTATCATATAGTTCGACTGACACCCTTATTTCCCTGATGTTTTGTATATATTCTAGTCTCATAATAATGCTTAGTCGAAAGTTTTAATTAAAAATGAACATCTAAGTGCTCCTATTTTGTCAATAAAACAAATTCTTGATATTATTTCTTAGGTATTATAGAATAATTAATG # Right flank : CTAGCTGCAAAATGCACACATTTTTCTATAAGCTTTCTCATATTATTAAAAAACTAACAGATATTTAGATACCATGCATATGTCTAAGAAAGCTATTTATAATCAGCTTGTATCTGCTTATGGCGAACAACTCGAACCAGCTGAAGCACAATATGCAGTTGATCATTTAAGTGAATAAGCGACAAAAGTATCTGTTTGTATAATAGGTGTTTTTTCTTTACTATGGAAATAGATATAAAGCTGACTTGAACACTTAAATACTTGAAAAGTGCCCCAAAGTTCTTTGTTTAAAGGCTTTCAGGGCACTTTCTTTTTTCATGGAATGTGGTAATTTACGCTTTACCTGTATTTTTTTATGATATTTTTTCAGCTTCTTCTCCAGAATCCTGTAGACCAAGAGAGTACTAATGGCGTTGCACTTAATGTTGATGGTGGTATGGTTAAATCTACATATTGATAAGATACAAGGATGGAACATTCCATCCTTTTTGTTTCCATAA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAGATATCGTTCTTATAAAGGATTAACGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.74%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.40,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA //