Array 1 15-363 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JABUAC010000009.1 Staphylococcus aureus strain 18SBCL669 18SBCL669STA_9, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                               	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	==============================================	==============================	==================
        15	    46	 100.0	    30	..............................................	AAAAGATTTAGCAACATAGATGATTGTTTT	
        91	    46	 100.0	    29	..............................................	TTTTACTTTTTATTTAAAGCAACTGTAAT 	
       166	    46	 100.0	    30	..............................................	TAATAAGTTGCTCGTTTCCGTTTATTCCGT	
       242	    46	 100.0	    30	..............................................	AGTAGGTAATGTATTCACAATAGACACATT	
       318	    46	 100.0	     0	..............................................	|                             	
==========	======	======	======	==============================================	==============================	==================
         5	    46	 100.0	    30	GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC	                              	       

# Left flank :   CCTGTTATGTGTTCG
# Right flank :  |

# Questionable array : NO	 Score: 6.06
# 	Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:74.47%AT]
# 	Reference repeat match prediction:         F [matched GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-4.00,-0.90] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [1-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [13.3-0.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.14,0.41   Confidence: HIGH] 

# Array family : II-C [Matched known repeat from this family],   
//


Array 1 228-61 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JABUAC010000016.1 Staphylococcus aureus strain 18SBCL669 18SBCL669STA_16, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                         	Insertion/Deletion
==========	======	======	======	=============================	========================================	==================
       227	    29	 100.0	    40	.............................	CCGATGTTAAACCAAAACAGCCAAAAAAAGCAAAATTTTC	
       158	    29	  96.6	    40	........................T....	CTGATATTAAACCAGAACAGCCTGCAAAAATACCCCTTCT	
        89	    29	  96.6	     0	....A........................	|                                       	
==========	======	======	======	=============================	========================================	==================
         3	    29	  97.7	    40	AATAGCAGTCACAGAATTAGGAATGGTAA	                                        	       

# Left flank :   CTGCTACAGTCTGCAAAAGCACGCTCTT
# Right flank :  ATCGATGTTAGACCAGAACATTTTTCAAAAGCAGCATCTCCGATAGATGTAACGGTATTGT

# Questionable array : NO	 Score: 2.56
# 	Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     AATAGCAGTCACAGAATTAGGAATGGTAA
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:65.52%AT]
# 	Reference repeat match prediction:         NA 
# 	Secondary Structural analysis prediction:  NA [0.00,0.00] Score: 0/0.37
# 	Array degeneracy analysis prediction:      R [1-1] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [61.7-23.3]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.27,0.41   Confidence: LOW] 

# Array family : NA
//