Array 1 117407-121588 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSKR01000011.1 Actinomyces oris strain R11372 R11372_contig011, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 117407 29 96.6 33 ............................G GCCAGCTCCTCACCCTCACCGGCCGGCCTGGTG 117469 29 100.0 33 ............................. CAGAATCGCAATCCCCATCATATCAAACCGACG 117531 29 100.0 32 ............................. ACCAACGGCGAAGCACACAAAACCAACCACCA 117592 29 100.0 32 ............................. TCGTTCGGGAAATCTGTGTAAGCCCAGATAAA 117653 29 96.6 32 ............................G CACGCCTGATAACAACTTCATTACTCAGGTGA 117714 29 96.6 32 ............................T GAGGCGCTAACTCTCCTGGGGATCATGAATGT 117775 29 96.6 32 ............................G GTCAATCTCAGTGGTGGTGTCAATCTCAGAGA 117836 29 100.0 32 ............................. GTCAACACTCAGCCCGTACTTAGCGTTAATCC 117897 29 96.6 32 ............................G CAGCGCATGGAAAAACTCGGTGCCTCACTTAA 117958 29 96.6 32 ............................T GTAGTGGCCCTGTTTTTCTGGGAAATTGGGAA 118019 29 96.6 32 ............................G CCTCAGTATCGTGCACGGGGTGTGACGGAGTC 118080 29 100.0 32 ............................. AACGGGCAGACCGTCACGGTGTCAGCAGACCA 118141 29 100.0 32 ............................. AAGATGAGTGACTATGCCGGCGGTTTTGATTC 118202 29 100.0 32 ............................. TCAGCGGCCTCAATCACCATGTCAGTGATCTC 118263 29 96.6 32 ............................G TCTCTGTCCGTCGTCGTCCCCGAGGGCGTCGC 118324 29 100.0 32 ............................. AACGGTAGACGGGTTGCGACCCTTCGGCTTAA 118385 29 96.6 32 ............................T ACGGACTCTTTTATCTACTGGTGCGTGGCCTA 118446 29 100.0 32 ............................. TTACGGAAGGCGTAGTCTTTGGGTCCTCCAAC 118507 29 96.6 32 ............................T GACCCTCGCGTGAGTGCTATCGATAGCGCACT 118568 29 100.0 32 ............................. TGGCACCCTCATATGGATCAGATCCACCTCTG 118629 29 96.6 32 ............................T CCGGGCTCAGCCCGGTCTCCGAGTAGCCCTAC 118690 29 96.6 32 ............................G TCCTTGGGGTCAATCCGGGCGTTGACCTGGAG 118751 29 100.0 32 ............................. GTCGTCATGGGGATCATTACCGGAAACTGGTC 118812 29 96.6 32 ............................T TCCGTCCCGGTTCTCTCCGACCGTTGCAATTG 118873 29 96.6 33 ............................A GGGGTCTGGGAGCCCCTCTGACGGACTTTTGTG 118935 29 96.6 32 ............................G CAGTCCACCGCCGTCTCGATGGACTCCGGCCA 118996 29 96.6 32 ............................G TTCCTGCCCCCGAGCCGCCTCCCTCTCGGGTG 119057 29 96.6 32 ............................T GGCGTGGGTGGCGATGTAGGCGGCCAGATCCT 119118 29 100.0 32 ............................. GAAGGTGCTCGGGCGGCGGCCGGAATCCCTAA 119179 29 100.0 32 ............................. TCGCAGAACTGGCAGGCCGCCTTCCCGAAGTT 119240 29 96.6 32 ............................G CCCTGCACGGGCGAGTTGAGGGCGTTGCGCTC 119301 29 100.0 32 ............................. TCCGAGGAAGCGCGAGAGCTTCTCCAGAGTCA 119362 29 100.0 33 ............................. GACCCGTCAAACGCAAGATTGTGGAAATAAGTA 119424 29 96.6 32 ............................G TACCTCTCCGATCGTCTAGCCGAGGCCGTGCG 119485 29 96.6 32 ............................G GTCTCGGCATTGACGACCCGACGGATTGGCGG 119546 29 100.0 32 ............................. CTCGGGTAGCCGTGGTCCGACTTCAGGACCAC 119607 29 96.6 33 ............................A GCAACTCCTATCGCTGAGGTGGACTCTCATATG 119669 29 96.6 32 ............................G GGCGTTGCCAGCCCCGGCCACTCCACTGCCGG 119730 29 100.0 32 ............................. AGGGACGCCTGCCCCGCGTCGCGCAGGCCGAG 119791 29 100.0 32 ............................. GCGCGGGAGGGCGGGGTCGGCGTCCATCTCGA 119852 29 100.0 32 ............................. CGCAGCCAGCCGAGGTTGAAGATGCTTCCGTC 119913 29 96.6 32 ............................G AGTACCCGCCAACGAGAGACCGCTCACAGCGC 119974 29 96.6 32 ............................G GACCCCCGGTAGCCCTTGCCAGCAGCCCAGCC 120035 29 96.6 32 ............................G ATTGGGTTCTCGAAGTGGGGCTCCCCCAGTCG 120096 29 96.6 32 ............................G CGCTGCGGCCAGCGCTGCTGGGGCGTCATCCC 120157 29 96.6 32 ............................G GTAGGTCGCCAGTCCTGGGACGGTGCCAGGGA 120218 29 96.6 32 ............................G CTCTTGGAGGGCTGGGCCGGCGGCAAGGGCTA 120279 29 100.0 32 ............................. CGCATGATCGAGGTGTGGACGGAGGGCTTCAG 120340 29 96.6 32 ............................T TCGCTTATCTCCAAGCGCCCGGGCGGTTGAAT 120401 29 100.0 32 ............................. GTCTGTCCATTGTTGAAGGACACCTCAAGGTA 120462 29 96.6 32 ............................G CCCGCACCACGAAGTGCGAAATAGCGGCTAAA 120523 29 96.6 32 ............................G AGGTGGAGTCGGCCGCGCCCGTTGCGTAGTCC 120584 29 96.6 32 ............................G TTCTGTCTCACCAGGGAGAAGAACGCCCCGGC 120645 29 100.0 32 ............................. CGTGTGGGCGGCAGTGCGTCCCTGGATGCGTT 120706 29 100.0 32 ............................. CGTGTTTGTGCGACATCATTCTTAAATTGCGT 120767 29 100.0 32 ............................. CTGAGGTACGGCACTGCTGGCCGCCCGCACCG 120828 29 100.0 32 ............................. AGTGGCTCCAACTGGGCGATCACCATCATATC 120889 29 100.0 32 ............................. CGTCCGACCATTCACTTCACAGTTGAAGCCGT 120950 29 96.6 32 ............................T GTCACCATGTCGCCGGGCCGGGCGCTCCCGGG 121011 29 100.0 32 ............................. TAGACACTGTCCAGTTGAAAGCGGAATTCCGG 121072 29 96.6 32 ............................G AATGCAGCACCGAGCGCGGTGAATGCGGCGGC 121133 29 100.0 32 ............................. ACCGCCCCTGGGCACACCTCAGTCACTGCATC 121194 29 96.6 32 ............................G CACGGCTGGTCGACACAGGAGCCTCAGTGGGC 121255 29 100.0 32 ............................. TGCTCCACCAGATCCGGCCGTCCGCTTAGGCC 121316 29 100.0 32 ............................. GTGGTTTGCTAGTCGATGGTTGAGCGCACGGC 121377 29 96.6 32 ............................G GCGTCGGGCTGGGCGTCGTCCGTGGTTTTCAG 121438 29 100.0 32 ............................. AACTGGCCCACAGCACCCCTAATTCGAGTAGT 121499 29 100.0 32 ............................. CAAAGACAACGCCTTCCGTGAGTTTCGGGTCC 121560 29 96.6 0 ............................G | ========== ====== ====== ====== ============================= ================================= ================== 69 29 98.2 32 GTAAACCCCGCGCGAGCGGGGATGATCCC # Left flank : GCAGCGTGCTGTAGCTGGTGGGGCGAACTACGCCGGAGAGGACGCAGGAGGATGGTAGTTCTGGTTCTCTCCGCTGCCCCTGCCTCGTTGCGGGGCTCCATGACCCGCTGGTTGTTAGAGGTCTCTCCTGGGGTCTTCGTCGGGCATCTCTCAGCTCGAGTGCGAGAGCAGTTGTGGGAGCTGGTGCGCGCGTACATCGGGGAAGGGCGAGCTCTACTGATCTGGTCGGTGCGATCCGAGCAACGGTTCGAGATCGCCTCCCTGGCGCACGAACGTGAACCGGTCGATATCGAAGGGTGCCTTGTCATGCGCACCCCGTACCGGCAGATCGAGGGATCGCAGGCGATCCCCGGCGCCGTCAAGCCTCCGAAGGAGTCCTGGTCGATCGCTGCGAGACGACGACGCTATCGGAACTCTGCGGAGCGAGCGCTAGGTCGGCAGTGAAGGCAAACGAGGTCTGGTAGTGTGGCTCGTCGTTGGGATTCCAAGGATCCGCAAGT # Right flank : GCGACGCATCTTAACCGACCGGCACCGCGCGCTGTAAACCCCGCGCGAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCGAGCGGGGATGATCCGTCACTGTCCGTCATTGTCCCTGAGGCCGTTGCGTAAACCCCGCGCGAGCGGGGATGATCCCTGGTCCCTAAGCGGGTACCCGGTGGTGTGGTGGTAAACCCCGCGCGAGCGGGGATGATCCCTCCGTGAGCACTCAGGCTGGCGCTTTCTTTTCGTAAACCCCGCGCGAGCGGGGATGATCCGCAGCAGAATTAACTCTCTTTTCAATACGGTCCGTAAACCCCGCGCGAGCGGGGATGATCCGGGTCCTCATATTAATTCTATCTTCATGCTTGAGTAAACCCCGCGCGAGCG # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.65, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAAACCCCGCGCGAGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGAGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [45.0-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 121826-125577 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSKR01000011.1 Actinomyces oris strain R11372 R11372_contig011, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 121826 29 96.6 32 ............................C TGGTCCCTAAGCGGGTACCCGGTGGTGTGGTG 121887 29 96.6 32 ............................C TCCGTGAGCACTCAGGCTGGCGCTTTCTTTTC 121948 29 100.0 32 ............................. CAGCAGAATTAACTCTCTTTTCAATACGGTCC 122009 29 100.0 32 ............................. GGTCCTCATATTAATTCTATCTTCATGCTTGA 122070 29 100.0 32 ............................. AAAGGAGCCCCAAAATGAGCACCATCCGCAAA 122131 29 96.6 32 ............................C CGTTGAGTACACGCCCGGCGCTCCACTACGGC 122192 29 100.0 32 ............................. TGTACACCGCTGTACCGGTGTATGTACAGCGG 122253 29 100.0 32 ............................. GTCTCGGCATTGACGACCCGACGGATTGGCGG 122314 29 100.0 32 ............................. CCATCGAAACGGACAGGAAGGACCGGTCATGG 122375 29 96.6 32 ............................C GGGCAGCCAAATCATAGAAACGCTGACACGGA 122436 29 100.0 32 ............................. CCCAAAACGTTGTCGGCATTCACTGCCATTGG 122497 29 100.0 32 ............................. AGCAGGACGCGCAATTGGTGGCCGATCTGGAG 122558 29 96.6 32 ............................C TATGTAAACTCTGTACGGAAGATTAATAGCAC 122619 29 96.6 32 ............................C TCAGTAAGGCTCCGTGGGTATCTCAGGGCATC 122680 29 100.0 32 ............................. TCTGAGTCGCTGGTAACGCGGAAGATCAAGCG 122741 29 100.0 32 ............................. AAATGGGTGCGTACCCGCACCGGTCCAGGAAT 122802 29 100.0 32 ............................. GCGAAGATCTTCAACGCCGTCAATGACGCCAA 122863 29 96.6 32 ............................T GGCGGACCATCATTCTTAAACCCGCCGTCATT 122924 29 96.6 32 ............................C GCTGCCAAGCGCATCCTCACTCTCCTGGGCGA 122985 29 96.6 32 ............................C GAGGACGACGCCAGGCAGGCGGCTGAGCGCTA 123046 29 96.6 32 ............................C GAACTTACCGAACCGGGTATTAGCAACGTCAT 123107 29 96.6 32 ............................C ATAGGGAGATCGGTCCAGACAGAGAAGCAACC 123168 29 96.6 32 ............................T GTATTACGGGACTTTGGGGAATCGAATAGAAT 123229 29 96.6 32 ............................C ACCGACCGCGTCCCTGGAAAGCATGAGGCAGA 123290 29 96.6 32 ............................C GAACGGGTCGCGCTTAACGAGTTCAGCCTCAT 123351 29 100.0 32 ............................. TCTTTCCGGTACCACGACTACCTACGACCATG 123412 29 100.0 32 ............................. ACGGGCGCCGTAGTCCACGGAGGTGACGCTGC 123473 29 100.0 32 ............................. ATCGACGCGGGCAGATTCGTCATCACCACCAC 123534 29 96.6 32 ............................C CACGGGAACTGGCGTGCGAACAGATTAACGAG 123595 29 100.0 32 ............................. AACTGTGCGTGACACGAATTACGAGATGGCCC 123656 29 100.0 32 ............................. GACTTCCTAATGGAGCGGAAATTTATGCTTGC 123717 29 96.6 32 ............................C CGCCGCATTAGTCCCGGTGAGCGCGTTCTGCT 123778 29 100.0 32 ............................. CACGCGGCTGGCTAGTAGAACCTGGCGCCGCA 123839 29 96.6 32 ............................C CACTCATTACCGCCGCGGAGAATATGAATCAC 123900 29 96.6 32 ............................C CGAACAGGACGGTGTTTGGGGTGAGGCCAGCA 123961 29 100.0 32 ............................. AGTCCTTCATGGGAGCGTCAACGAAATCACCG 124022 29 96.6 32 ............................C GACCCTTCTGTTCCACCTTGTGGCGTCGAAGA 124083 29 100.0 32 ............................. GCGTCCGCACCAAGGTGGCAGCACGCGTCTCT 124144 29 96.6 32 ............................C GGCAAGCCGACGTCGGTGCTCCTTCTCACTAG 124205 29 96.6 32 ............................C TCATCCCACAGGCGCACATTGTCGACCGGAAT 124266 29 100.0 32 ............................. GCGAGTACTGGTAAGTGACCGGGTGTCGCCGG 124327 29 96.6 32 ............................C GCGCGTGTACTACCCTCGGTGACCGGCTCACC 124388 29 96.6 32 ............................C GCTAGGTGCCCAATTGGGCACCGTCAAGGCGG 124449 29 96.6 32 ............................C CTCCTCTACGTCGACTCCGACACACTCACCAA 124510 29 100.0 32 ............................. GCTGGGCGCGTCATGGTCGCGGAGGCGGAGAC 124571 29 96.6 32 ............................C GTGGCTAAGGCTCTCTCCGACCAGTGCGACCG 124632 29 96.6 33 ............................C CGGGGAAGGCGCGCTCGTGCCGGAACTCGTTGA 124694 29 100.0 32 ............................. AGGGGGATAGTCCCCATGGTGGGGTCCGGGGC 124755 29 100.0 32 ............................. TCCGTCGGCATGGTGCTCACCCAGACCGCCGG 124816 29 96.6 32 ............................C GCGAAGTCGCTGATCCCGGCCTGATAGGCCCT 124877 29 96.6 32 ............................C TACGCCTGGAACGCCTTCCTCGCCGTCAAAGC 124938 29 100.0 32 ............................. CGCCCGCTTCACGACCGCGCAGGCGACGCGCT 124999 29 96.6 32 ............................C TGTCATCCCCAGCGGCTTAATGAACATATCCT 125060 29 96.6 32 .................A........... ACACTCGATATCTAACGTTAGGTGCGCAGATT 125121 29 96.6 32 ............................C CGGCCGCAAGCCCAACGGCGGACGTGACCGCC 125182 29 100.0 32 ............................. GTCAGGAAGCACCCCACCGTCGCGGAACTCGC 125243 29 96.6 32 ............................C GTGCTGACCCGCTTCGTGGGACAGCAGGGGAA 125304 29 100.0 32 ............................. GTCGCTGGACTGTCGGATGCGGCGTTCAGGGC 125365 29 100.0 32 ............................. CCCCCACCATCGCGGCAGGGGCTCATAGGTAT 125426 29 100.0 32 ............................. TCGCTGCTGTAGGGGCCTCTCCACCTCGCGAC 125487 29 100.0 33 ............................. GAACACCAATGACCTGCCCATTCACCGCTGACG 125549 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ================================= ================== 62 29 98.2 32 GTAAACCCCGCGCGAGCGGGGATGATCCG # Left flank : CGCGAGCGGGGATGATCCCGTGGTTTGCTAGTCGATGGTTGAGCGCACGGCGTAAACCCCGCGCGAGCGGGGATGATCCGGCGTCGGGCTGGGCGTCGTCCGTGGTTTTCAGGTAAACCCCGCGCGAGCGGGGATGATCCCAACTGGCCCACAGCACCCCTAATTCGAGTAGTGTAAACCCCGCGCGAGCGGGGATGATCCCCAAAGACAACGCCTTCCGTGAGTTTCGGGTCCGTAAACCCCGCGCGAGCGGGGATGATCCGCGACGCATCTTAACCGACCGGCACCGCGCGCTGTAAACCCCGCGCGAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCGAGCGGGGATGATCCGTCACTGTCCGTCATTGTCCCTGAGGCCGTTGC # Right flank : CTTCTCCGCGCGGGCGTTCAGGAAGCGGGTCAGTAAACCGGCTCTTCGTGTTTGGGGGTGTGGTAGGTGGGGCTTATCGGCTGGTTGAGGTGGTTGTTGTCAGGTGGTCTTTGAGGCGTCCGGTGTGGATGAGGCTGCGGATGGTGTAGTTGGCCAGGT # Questionable array : NO Score: 5.83 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.66, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAAACCCCGCGCGAGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGAGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 31295-31144 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSKR01000039.1 Actinomyces oris strain R11372 R11372_contig041, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 31294 29 100.0 32 ............................. CCTGGTGGAGGCGGCACCCTGCCGCGCACGAC 31233 29 96.6 32 ....................A........ AACACAGCCTCAGCGGTCGCGGATATAGTCTC 31172 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 3 29 97.7 32 GTAAACCCCGCGCGAGCGGGGATGATCCG # Left flank : GCTCAGGATGGTCTTTCCAGGACCAGCACTGAAGTAGGGTGCTGTCGATGATCAGCTGGGCTGTGGGGTCCAGGTCCTCCACCGTCGGCACACAGGCTTGGAGGGCGTGGGTGATCAGGGGCGTGTAGGCGGCGATGACGCGGGAGGCGGTGGCCTGCGAGACGCAGTAGGCCTCGGCGAGCAGCTCCTGGCACGGGTTGTGGCGCAGGTAGGTCAGGGTCAGGCGCACGCACAGGAACACCCCCCCAGCACCCTCGCCCCGAACACCGGCAGGGGGCCGGAGGCGTGAATGGTCTCGCACAGGTCCAGGACATCATCGCGAGTGATCCTCGTGCTACTATTCGTCATGGCGGTTTGCTTCTTGGTTGAGCTGGCTAGTCACCAAAACTCTCTCAAGAGCAAGCCGCCACCCTATCTAACGACACACCCCCTTTTAAACACCCTAAACACCCCTATGAATAAGCCTCCATGATTGGAACACACTTTGCAGATGAGCCAAA # Right flank : AGAGCATTTGCCCGAGGAGGGGGAGGGCCCTGTGAGCCCTGCGCGGGTGGGAGAGTGGGAGAACGGCCCGTGTGCTTGAGGTGGAGTGACCGGCTCATGAGTCCGGGCGGGGTGCCTGGACTGGTGCCCACCTGGACCGCATCAAGCGGGAGGTCGGCTGCGTGGATGCCTCCGTTGTGGCGGACCCGGCTGCGAAGGAGCCCACCGCCACCGTCGAGAAGGTCACTGAGACGGCCACGGGGGCGGGCGAGGTCTGACTCAACACGCTCAGTCGATTAACTTTACAAATACATCTGGTGTGATGCAGGATAAAGCCGTTGCTCGGCTACCAGGGTCTGGTCGGGCAACGGCGTGCTCCTGTTCCCCCAGGACCGCCTCTGTCATCTCCCTAGCCGGTACTCATCAGGCCGCCGACACGGCGGTCTGAGGGGCGTGCGCGTGTCCCCTCCCTGGGTGGGGCTGCCGGCACTCTCATTAAGAGGTATTGACAATGAGTGTCA # Questionable array : NO Score: 5.56 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAAACCCCGCGCGAGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGAGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 32531-32319 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSKR01000039.1 Actinomyces oris strain R11372 R11372_contig041, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 32530 29 96.6 32 ............................G GGACGTTCAAGATTGCTAGTAATTCTACCGGC 32469 29 96.6 32 ............................A GCGCGTCAATTTTCGCCAGGCCCGCCTGCCCC 32408 29 100.0 32 ............................. GTGGATCCGGTGTTGGCGCCGGACAAGGTGAA 32347 29 93.1 0 .....T..............A........ | ========== ====== ====== ====== ============================= ================================ ================== 4 29 96.6 32 GTAAACCCCGCGCGAGCGGGGATGATCCC # Left flank : CTCTACCGGGCCAGGCGCACCCTGCTGACTGGGGCCGGCCTGCTCACCGATGCTCAGGCCGAGCGTCTCGAGGCTCTGTTCGCTGATGATCGCCACGCTGCGGTCCAGGCCTCCTGGGGTGTCTACCAGCGTCTCATCCAGGCCTACAGGGTCGAGGACCCGGGCCTGGGAAAGTACCTGATGCAACGGCTCATCGACTCCCTGAAGCAGGCCATCCCAGACGAGCTGGAGGAGATCCAGGCACTGGCAAAGACCCTGACCGAAAGAGCCTCCGACACCCCTGGCCTACTTCGACCGCCCCCGTACCTCCAACGGCCCCACGCCAGGCGATCAACGGGCGCCTGGAGCACCTACGCGGCATCGCCCTGGGACTTGCGCAACCTGGCCAACTACACCATCCGCAGCCTCATCCACACCGGACGCCTCAAAGACCACCTGACAACAACCACCTCAACCAGCCGATAAGCCCCACCTACCACACCCCCAAACACGAAGAGCCA # Right flank : ATGAGGCTTATTCATGGGGTGTAGGTGAATGTGAGTCCGAGGATGGCTGTGATGGTTTCTGGGAAGGTTTCTAGTGGTCTTCTGTAGCCGGTGTGCAGGACTCTCCAGGTCTTGGAGGCTTATTCACAGGGCTAGCCGACTCCGGCATCTGCGCAGTTCAGAGCACCTTTGACGGATGCTGTGAATAAGCCTCTTGATGTTGGCGATGACTCGCTCGATCTTGTAGCGGATCTGGTTGACGGTTTTGTTGTAGGTCTTGTCGTCTGGGTGGAGCGGCAGGTGTGGGGGTTTTCTCTTGGGGGTGATCATGCCCAGTCCGATGTACCCCTTGTCGCCAATGTGCTTGGGTGGTGAGACTCCGTCTGGGAGGTCGGTGGCGGGGACGTCGAGCAGGCCGCAGCGGCGCAGGGCCTTGGCGTCGTGCGTGCGTCCGTTTTGGGGGTCGGAGACCCAGGCTAGGGTCCCTGAGGGGGTGCAGGTGACCTGGACGTTCAGACCTG # Questionable array : NO Score: 3.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAAACCCCGCGCGAGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGAGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 21144-20113 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSKR01000048.1 Actinomyces oris strain R11372 R11372_contig050, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ====================================== ================== 21143 35 100.0 36 ................................... CTCAACCGAGAATATGGGGTGTTCAACCGGTCGATC 21072 35 100.0 35 ................................... ACTCCACATCTTCCTCGTGGCGGGGGTTGAACAAC 21002 35 100.0 37 ................................... CGATCGAAGCCAAACGTACTCGTCCCCACCTGGCCGC 20930 35 100.0 38 ................................... GTCTCCGGGTAGTTCACCGCCCCCATGACCTCCTGGAC 20857 35 100.0 35 ................................... TCCTCAACGTAGCAAGGTTGGCGATTAATTAACGC 20787 35 100.0 37 ................................... GATAGGCGCTTCGCTTCGGCCATTTCGACTGCGCCGG 20715 35 100.0 36 ................................... ATCGCCAGCGCCGTCGGAGCCAAGCAGTCCGACCTT 20644 35 100.0 36 ................................... CTGCTGGTCGCCGGGAAGGTCCTCGTCCCCGGCTCT 20573 35 97.1 35 ...................C............... ATGCCGGTTGAGCCCGAGGACCAGGGGATCGACAG 20503 35 100.0 36 ................................... GTCTGCATCGCCATCGTGACCAGGCGGTAGAGGATC 20432 35 100.0 35 ................................... CCGACGTTACCTCGGTAGTCACGGACGATGGTGAC 20362 35 100.0 36 ................................... TCGGCCTTCATGATGCCACGCAGCTTGGTCTGCCCG 20291 35 97.1 37 .............T..................... GTCGCCGACATGATGCAGGCGACGAGCCTTGCCGGAC 20219 35 100.0 36 ................................... TGGTTTCCCTCACCACTCCGACCCGGGCAGCACGTG A [20196] 20147 35 94.3 0 .............T....................T | ========== ====== ====== ====== =================================== ====================================== ================== 15 35 99.2 36 TCGCAGTTCCTTCGGGAACTGCACTTCATTGAGGC # Left flank : | # Right flank : AGGTGGGGATTGATGCACTTACTGTGGTCGTCAATCCCCGCCTACTGCTCTTTGTGCGTCACCTTCCAGGCGCGCCTGGCCCCCTCCAGGGCGGTGGGCAGGGCTGCGAGCAGGTGCTCGACGTCGTCGGGGACCGTCTCCCGGCCCAGGGAGCAGCGCAGCGTGGAGCGGGCCGGCCCCTCCTGAAAGCCCATCGCCAGGAGCACGTGACTGGGCTGGGCGACCCCGGCGTGGCAGGCCGACCCCGCCGACGCATCAATCCCCGCCAGGTCCAGGGCCATGAGCAGCGCCTCGGCGTCGGCCTCCTCGAACCACAGGTGCGCCGTGGAAGCCACATGATCGGCACCTTCCGGCAACGTGGCGTGAACACCCGCAAGCGCCCCGGCACCCTCAAGGATCCGACGCCGCAGCACCGCCAGCCGGGCCTCCTGCTCCTCCCGCTCGGCGACCGCCAGCTCCACCGCCAGGGCCAGCGCCCGAGCCGCCACCACGTCCTGCGT # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCGCAGTTCCTTCGGGAACTGCACTTCATTGAGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.20,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA // Array 1 11893-11049 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSKR01000018.1 Actinomyces oris strain R11372 R11372_contig018, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 11892 37 100.0 37 ..................................... CACGAACGCTGGAGGGCATCGCCACCTGAGCCCACAG 11818 37 100.0 36 ..................................... CAGCATCCTGACTCTCAGTCATGGTCTTAACAGTAA 11745 37 100.0 36 ..................................... CAGCATCCTGACTCTCAGTCATGGTCTTAACAGTAA 11672 37 100.0 37 ..................................... TAGATGGAAGCAATCGTCATGTTCTGCACGTTGTTTG 11598 37 100.0 35 ..................................... ACACGGTTCAGTAGCCAGCATATCGGCGAAGTTAC 11526 37 100.0 35 ..................................... TAAGCGATAGCGGTGCTGAACCGCTGACCGAACGA 11454 37 91.9 38 ...........T.............A..T........ TCAACGATGACGTGACCGGCAGTCCCGTCGGCGACGAG 11379 37 97.3 36 .................G................... ATCTCATCGAACGTATCACTGGGAACAATCATGGTT 11306 37 100.0 36 ..................................... CGTGCTCACGTCCTCCACGAGGGAGCCTCGTTCCAG 11233 37 100.0 35 ..................................... TCTGGTCGTACTCGTTGAGCCATTTCGAGCTCCTC 11161 37 97.3 38 .................G................... CCCACGCCCGGATTGGCCAGGTTCCGCAGCGTGCTCTC 11086 37 78.4 0 ........A................CGC....C.CGG | T [11054] ========== ====== ====== ====== ===================================== ====================================== ================== 12 37 97.1 36 GTCAGAAAGCACCCAGCACCAGAAGGTGCATTAAGAC # Left flank : GCACCAGAAGGTGCATTAAGACCGGAGTCATCAAACTTCCTGCTGGCAATAAATACCGTCAGAAAGCACCCAGCACCAGAAGGTGCATTAAAACGACAGGCATACGACCTTATTCTGCCGTGGCTTGCGCCTGTCAGAAAGCACCCCGCGTCAGAAGACCTATTGAAGGAACGTACAGTCCATCTTCATCTCCTTAACGAGCTGGGCGGCCGGATGGCTCGGCGTGGGAAACGCTCCTGACGCCAAGTCCAGGGACCGGTTCCACCTCCACCACACCAGGATGTGCCCGCAGTCACAGGCGGGAACGTCGACCTTTTGGCTTGACGTCGTCGGAAGCTGGTGGCTGAATGCACCTGAGGGGGCGTCGGTGGCGCTTGGCATCAGGACGCCGAAAAGTGGTTAAATAGGGGCGCTGCCGTCCGGCCTCGCGGGGTGCTTGCGGAGCCGGTGGCGCTCCAGCCCCTGGAAGTGGCGCAACGAAGCCGTTCCCAGAGGCCGGG # Right flank : GGCTTGCCGTGCGGTGGTTGCCAACAGCGCCGGAAAACGGCCAGTCCGACCGCCAGTCCCTTGAATAGGCCCTCCGAGTCGCCCCGAACCACCCCGCCACCATGGGCGCCGTCCTCCTCAACGGCAACCAAGACCTCCACCCCAGGTGGATTCGTGCCAGGTGAGTTCGCAAGATTCCAGGAAACGTCACGCAGCCGAAACGCCTCTACCGCAGGAGTCGGCCAAGCAGACGCAAACAAAAGCGGGCGGCACCGAGAAACTCGGCAGCCGCCCACTCACGCCCACTCGTCACCCGCCCACGAGCGGGCAGACAGCCATGCGACCATGCGGCCGAGCCGACAACAGCCCAGCCAAGCCGCCCCGCGCGCCGCCCCCGCTTCAGGCGCGGCGCAGACGCAGGATGATAAGGCCGCCAGACAGCAGGATCGCCGCCACGGACAGCACACCGATCGCCACACCCGTCACCGGCAGCCACCGCTCCCGGACACTCTGGGCGGAAG # Questionable array : NO Score: 3.11 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAAAGCACCCAGCACCAGAAGGTGCATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,14] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.80,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-26.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 12989-12223 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSKR01000018.1 Actinomyces oris strain R11372 R11372_contig018, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 12988 37 100.0 36 ..................................... CTTCGCCTGAGCCAGCCAAGTAAACTCATGAGCTCT 12915 37 100.0 38 ..................................... TCTCCTCAGTGAAGACTTGGGTACTGAAGTCTGGGAAG 12840 37 100.0 35 ..................................... TCTGGGCCGCTTCGGACATGGAAAGCTCCTTCGTG 12768 37 100.0 38 ..................................... ACGAGAGCCACTTCGTACTCGATACGACATCCCCTTGC 12693 37 94.6 35 ..........C...............C.......... AAGGGCGGTTTGGTGCTCTTTGCCCGTCCAGGACA 12621 37 97.3 34 .............................G....... GGCTTCCGAGCGGTCTTCAAAAAGGCTCATGAGA 12550 37 97.3 32 .......G............................. TTGCGTTCATGGTGGTTGCTCCATGGTCGGCG 12481 37 91.9 37 .C...........TC...................... ACCACTCGCGCCTCTCCCAGCACGGCGGAATCACTCC 12407 37 100.0 35 ..................................... CGGAGTCATCAAACTTCCTGCTGGCAATAAATACC 12335 37 97.3 38 ..................................A.. GACAGGCATACGACCTTATTCTGCCGTGGCTTGCGCCT 12260 37 75.7 0 ..............C..GT......ACCT......GA | G [12226] ========== ====== ====== ====== ===================================== ====================================== ================== 11 37 95.8 36 GTCAGAAAGCACCCAGCACCAGAAGGTGCATTAAGAC # Left flank : TCGCCTTGGCGGTCCTGACCTTCATAGGGCTGCCGCTGAGCGTGTTCCTGGAGATCTGGTCCAACTGGGAGGCCGCCAAGGGTATCGCGGTCCGGCACCAGCGCATCGGCGGCTGGGACGCGGGATGGGGGTGGATTCTTGGCTTCGGTCTTATCGGGTCGATCCTCATCGGCGGTGGGATCTGGCTGCTCGTCGACAAGGTGGGCGGCCGGGTGGCTCGGCGTAGGAAACGCTCCTGACGCCGAGTCCAGGACCCGGTTCCACCTCCACCACAGCAGGATGTGCCCGCAGTCACAGGCGGGAACGTCGACCTTTTGGCTTGACGTCATCGGAAACTGGTGGCTGAAGGTGCCTGAGGGGGCGTCGGTGGCGCTTGGCGTCAGGACGCCGAAAAGTGGTTAAATAAGGGTACTGCTGGCCGGCCCCGCGGGGTGCTTGCGGAGCCGGTGGCGCTCCAGCCCCTGGAAGTGGCGCAACGACGCCGTTCCCAGAGGCAGGGG # Right flank : ACGTACAGTCCATCTTCATCTCCTTAACGAGCTGGGCGGCCGGATGGCTCGGCGTGGGAAACGCTCCTGACGCCAAGTCCAGGGACCGGTTCCACCTCCACCACACCAGGATGTGCCCGCAGTCACAGGCGGGAACGTCGACCTTTTGGCTTGACGTCGTCGGAAGCTGGTGGCTGAATGCACCTGAGGGGGCGTCGGTGGCGCTTGGCATCAGGACGCCGAAAAGTGGTTAAATAGGGGCGCTGCCGTCCGGCCTCGCGGGGTGCTTGCGGAGCCGGTGGCGCTCCAGCCCCTGGAAGTGGCGCAACGAAGCCGTTCCCAGAGGCCGGGGTCAGAAAGCACCCAGCACCAGAAGGTGCATTAAGACCACGAACGCTGGAGGGCATCGCCACCTGAGCCCACAGGTCAGAAAGCACCCAGCACCAGAAGGTGCATTAAGACCAGCATCCTGACTCTCAGTCATGGTCTTAACAGTAAGTCAGAAAGCACCCAGCACCAGA # Questionable array : NO Score: 2.84 # Score Detail : 1:0, 2:0, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.79, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAAAGCACCCAGCACCAGAAGGTGCATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,14] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.80,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA // Array 3 27714-27094 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSKR01000018.1 Actinomyces oris strain R11372 R11372_contig018, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 27713 37 100.0 37 ..................................... CCTCATCCTCATTACCAGTGGAGCCGTAAGGTGCAAC 27639 37 100.0 32 ..................................... AGCACGGTCTGCGAGACCAGGTCGTGAATCTC 27570 37 100.0 34 ..................................... ACGAAGATCGTCGGGACACTCCATCCGTCCTTCC 27499 37 100.0 36 ..................................... CCAATCGTCTGCCAGTTCAGCTGTTCGGCGGTAGCG 27426 37 97.3 37 .....................C............... GTTGCAGCGACTAGCCAAAACGGCGCAACGTTGCGCG 27352 37 97.3 37 .....................C............... TCATGGTTGGCAGCGTCCCAGTCCTCACGAGCCCGAC 27278 37 100.0 36 ..................................... TGTAGTCGCGGCGCCAGGACTTGGGCATGTACCCCA 27205 37 100.0 38 ..................................... TCGAGACAGGCGTATAGGTGTTCTCCTGGGCGGAGAGC 27130 37 81.1 0 ..........................CCT...G.CGG | ========== ====== ====== ====== ===================================== ====================================== ================== 9 37 97.3 36 GTCAGAAAGCACCCAGCACCAGAAGGTGCATTAAGAC # Left flank : GCGTGAAGGCGGCGGGGGGTGGCCTCGACCGGGCCGGGCGCATCGAAGCGGACGAATACGGTGGCGGGCACTCGACGGGGCTCCTTTGCGGCGTGATGTGTGGTGGGTGTGGCAGGCAGGCCGGCGCAAGGCCGTCCACCTCTTTCTTCTGGCGACACTACCGGAGGGGAGGCGGCCTGTACGGGGAGTTCAAGAGGTCGACGTTCTTCAGCATCGAGGGCCAGGAGGAGGCGGAGAGGACGAGGCCCAGCGGCGCGCCGGTCGAGCCACGGAACCACATTGTGTCGACAGTCACGGGCGGGAACGTCGACCTTTTGGCTTGACGTCGTCGGAAGCTGGTGGCTGAAGGTGCTCCAGGTGCCGTCAGTGGCGCTTGGCGTCAGGACGCCGAAAAGTGGTTAAATAGAGGCAGGGCTGGCCGGTCCCGCGGGGTGCTTGCGGAGCCGGTGGCACTCCAGCCTCTGGAAATGGCGCAACGACGCCGTTCCCAGAGGCAGGGG # Right flank : GACTCACAGCCCACCCTCATCTCCTTAACAAGCTGAGCGACCAGGCAGCTCGGCGGAGGAAGCGCTCTTGACACCGAGTCCAGGGCTCGACTCCATCTCCACCACAGTAGGTTGTGTCCGCAGTCACAGACCGGAACGTCGACCTTTTGGCTTGACGTCGTTGGAAACTGGTGGCTGGAGGTGCCCGATGGGGCGTCGGTGGCGCTTGGCGTCAGGACGCCGAAAAGTGGTTAAATAGGGGCGGTGCCGGCCGGTCCCGCGGGGTGCTTGCGGAGCCGGTGGCGCTCCTGCACCCGGAAGTGGCGCAACGACGCCGCTCCCAGAGGCAGGGGGCAGAAAGCACCCAGCACCAGAAGGTGCATTAAGACGTCATCAGTGAGTCTCACCCAGATCGTGTTGCTGAAGGCAGAAAGCACCCAGCACCAGAAAGTGCATTAAGACCTGTGCGCGCCGGCGCTCATCGGTTTGGTTTCCAGCACCAGAAAGCACCCAGCACCAGA # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAAAGCACCCAGCACCAGAAGGTGCATTAAGAC # Alternate repeat : GTCAGAAAGCACCCAGCACCACAAGGTGCATTAAGAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,14] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.80,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 104061-104520 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSKR01000010.1 Actinomyces oris strain R11372 R11372_contig010, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 104061 36 100.0 34 .................................... TTCCAAGCATTGTTAAAGCCTCCCCCCAAATCTT 104131 36 100.0 37 .................................... CCAAAACGACCATCGTTGAACCACTTCCCGTGACCAC 104204 36 97.2 34 ....T............................... TCATAGCCCACCGATGCCTGAACACTCAGGGCGA 104274 36 100.0 37 .................................... TGGTCAGTGAAAGGACCCGTCACGTGCATCTCCGAGG 104347 36 100.0 35 .................................... CTGCGCGGCGACTCGATGTCGCCAGGAACATCCAA 104418 36 100.0 34 .................................... GCGTCGACGACGACGGCATATGGGGACCCACAAC 104488 33 91.7 0 .................................--- | ========== ====== ====== ====== ==================================== ===================================== ================== 7 36 98.4 35 CTCGCAGTTCCTTCGGGAACTGCACTTCATTGAGGC # Left flank : CCTACAAGGGAGTGACGGTGCGCTGATGCGTGATGATGTCAGACGCGTTCTCGTGGCCTACGACGTCCCGTCCGACCGGCGCCGAACGCGGGTGGCGAAGACTCTGTTGAAGTACGGGGACCGCATCCAGTACTCCGTGTTCGTCGTGGATGCGGCGCCGGCCAAGCTCCTGCGGATGCGGGGAGAGCTGGAAGGAGTCATCAAGATGGACGAGGACTCCGTGCTCCTGTGCGATGTTGGTCTGCTGTCCTCAGTTGATGAACAGCGATTCTCCTACGTCGGCCTGACCAGGACGATCACGCCAGAGGGGCCGCTTATCGCCTGATGCGAGCGCTCCGGTGCTCGAGGATCCCCGGGCAGCGCTCGCAGCGGTAGAACGTTGAAATAGCGGGGATTCTGTGAGGTGGGGTGAGGGGCGGGGTGGCTGGGTGGAAGTCCGAGCACGGAGCGCTCGCGAAGCCTCCTCAGATGGGCGTGGTGGCGGGCTATACTGAGCGGGT # Right flank : | # Questionable array : NO Score: 3.18 # Score Detail : 1:0, 2:0, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCGCAGTTCCTTCGGGAACTGCACTTCATTGAGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [31.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA //