Array 1 297-24 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCHA01000021.1 Bifidobacterium pseudolongum subsp. globosum strain 1747B Contig_21, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 296 29 100.0 32 ............................. GGTAGCATCCCCAAGGTATCGGGCCGGTGACA 235 29 100.0 32 ............................. TTGCGGATGAATCTGGCGTGCCATATGGCACC 174 29 100.0 32 ............................. CGCAGTGGGGGCACACGGTCTGGGTGGCGTTG 113 29 100.0 32 ............................. TGGCGTGCGGCGGCGCGGATGCTCATCGTGCC 52 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 100.0 32 GTGTTCCCCGCAAGCGCGGGGATGATCCC # Left flank : CCGATCGAGATGCAGGTGAACAGTGGCTACCTCTGTATGTGCATATGTCGGATTCGGCTCTTGTTGCCAAGCAGATTTGGGACGAATGGTTGCCAGAGGGAACTCGAAAAATCATTGCAGATGAGTTCGATGGTGATGCTGTATTAGCACGGAAAACCACGATGTTCCTCGCTGGTATCCACGACCTTGGTAAGGCGACCCCGGTTTTCCAAAGCAAGCCAATCACTTACGCCCCCAATGCCGCTGACGGAAGCATGGCTTGGATTCCCGAGAAGGTAGGTTTGATTGTAGGCCATTTCGACAATCCCAACAATCCAACGCATCCGTTAGCTGGAGAGTTTTTGCTTGAACGGTATTTGAAGAGCATTGGTTGGTCCAAGAATATTGCACGCTCGTATGCCAGCATTGTGGGAAGCCACCACGGTAAGCCGCCGATTGAGAGGAAACTGGGGGAGCTGGAGAAATCCTATTTAGGTGCGTCGAAATCGTAGTCGTTATAG # Right flank : CGATTCAATCGAACTGGTGGTTGT # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCAAGCGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCAAGCGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [21.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 30433-29794 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCHA01000020.1 Bifidobacterium pseudolongum subsp. globosum strain 1747B Contig_20, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 30432 29 100.0 32 ............................. ACGCAGGATATTTCTTGGCCAATCTCGAACCT 30371 29 100.0 32 ............................. GCTTCCATGATGTCGCCGTGGCTCACGGTGAT 30310 29 100.0 32 ............................. CGGTCGAAACGCTGCTGGTCAAGACTCGCAAG 30249 29 100.0 32 ............................. ATGCTCGGTGGCCCGTTCGGCATCGCCGTCGG 30188 29 100.0 32 ............................. TACGCCACGCCATGCGGCCACCTCCCTTTTAC 30127 29 100.0 32 ............................. ACCACGATCAATGAGGCGCAGCAGCAGATTGA 30066 29 100.0 32 ............................. GCGGGTGAGGGTGATGCGCTCCTGCAGGGCTT 30005 29 100.0 32 ............................. AATGCCACACCATTGTCGAACAATGTCAGTTC 29944 29 100.0 32 ............................. AGGAGGCGGGCGGCACCACGCCGGAACCACAG 29883 29 100.0 32 ............................. AAAAGGAGAGGAGGAAAACAATGAAAACAACA 29822 29 96.6 0 ............................G | ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.7 32 GTGTTCCCCGCAAGCGCGGGGATGATCCC # Left flank : GACGATTGGGGCTGCGGCTG # Right flank : CATGTACATTGATGAACGGAGGTAAATGGCATGCAGGCTGCAGAGGGAATGACGTTCGAGGATCTCGTCGATTGGTATGTCAGACAACTCGTTCTCCATGGCGATGAGAAAACGCCGAGGTCATCAGGGGTGCCCTTGCATGCGGCGAACCGGTAGTCGCTCTGAATATGGCAGTAATCCGGTCAAAACAGTTGAACATAATTCCTGAACGCCATATCATCGAGCGATCATGCGAATTATTGGATTCTGATGATGACGGCATGGAGATCTGCAAATACCTTTTTGCCCCGAACGGTGATTCCGTTGCACCGTGACATGGACCTGATCCAGCTCATCATGGTGGGGGATTTGTCCGTGCCGTTGAATGCGGCGGTTTGCCCCGCATGCGCGGAGATTCTGAACTCGACGAGATTCGCGACTCCATCGACCTCGACGCGCTCATGGCGGCCCACGACATCTCCAACAACTGACCCATATTCTCCCATACACGAAAGGCCCAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCAAGCGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCAAGCGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-10.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2599-8 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCHA01000052.1 Bifidobacterium pseudolongum subsp. globosum strain 1747B Contig_52, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2598 29 100.0 32 ............................. GGTAGCATCCCCAAGGTATCGGGCCGGTGACA 2537 29 100.0 32 ............................. TTGCGGATGAATCTGGCGTGCCATATGGCACC 2476 29 100.0 32 ............................. CGCAGTGGGGGCACACGGTCTGGGTGGCGTTG 2415 29 100.0 32 ............................. TGGCGTGCGGCGGCGCGGATGCTCATCGTGCC 2354 29 100.0 32 ............................. GATTCAATCGAACTGGTGGTTGTGATGGTAGC 2293 29 100.0 32 ............................. CACTCCTACGGCGTCACCGTCTACAAAGGGGC 2232 29 100.0 32 ............................. ACATCGCATACGACCGTCGAACGCCTCTCCAC 2171 29 100.0 32 ............................. CGGCAGACAGCCCCGACGGTGTCACGCACCGT 2110 29 96.6 32 ................T............ GTGGACAGGTCAATTTGCCGGTTCAGTTCCTC 2049 29 100.0 32 ............................. TCCCGCGTATCAATCTCGATGTAGTCCAGCGC 1988 29 100.0 32 ............................. AACATGGAGAGTGAGACTACTGATGAATGGTT 1927 29 100.0 32 ............................. AATGTGCGGGGGTAGGGTGCTGGGAGTGTTGA 1866 29 96.6 32 ............................A CGTGGACATGCAGAAGCTGGAAACGGCCGTTT 1805 29 96.6 32 ............................G GCGTGCGCGTGAAGATGAGATCGAGGTCGGCG 1744 29 100.0 32 ............................. ATGTGTTCGACCGTGCTGGCCTCGACCCGGAC 1683 29 100.0 32 ............................. CCCGAGGGTATCCGCAGTGTGATGACACAGAT 1622 29 100.0 32 ............................. TCGTCCACCCGTGCGCTTGGTGGGGCTCGTCA 1561 29 100.0 32 ............................. CGTGCCATAGAACGCGTTGCGCCAGTCGCCGG 1500 29 100.0 32 ............................. AAGACGAAGTAACCACTGTAGCCGACATGCGG 1439 29 100.0 32 ............................. TCCCCGACACGGGGCAAGCGACAAAGCAGTTG 1378 29 100.0 32 ............................. ATGCCGCGCGACGCATCCAGCACGTCACCAGG 1317 29 100.0 32 ............................. CCGATGGGCGACGTGGTCCACCAGATGTTCGA 1256 29 100.0 32 ............................. AGCCACCGCGATAGGGGAAACATCTGACATAG 1195 29 100.0 32 ............................. GTTGCTCATTGTTTGTCACCTTTCATGTGTGT 1134 29 100.0 32 ............................. GCCACGGCGACATCGCAGCCACAGCCGCGGCC 1073 29 100.0 32 ............................. AACGCGAGTGTGCCGACGGTCTCTTCCATCGA 1012 29 89.7 32 ........T.................T.G ATGACCGGCTGAAGCGTCGCCACAAGCCCGGA 951 29 100.0 32 ............................. ATGGGCGTCGTGCAGTACTTCCGTGACCACCC 890 29 100.0 32 ............................. GCGGTGAGAATCGCGTCCTGCGGGACTGTAAC 829 29 100.0 32 ............................. GACGCCGGTAAGGTCGAACGAACCGAGCGTGT 768 29 100.0 32 ............................. TTCTGAGTGACTGCCGACGGCGTAATGCTCAG 707 29 100.0 32 ............................. AACATCGCTTTGACGGGTGCCGGGTGGAATCA 646 29 100.0 32 ............................. AGTACCGGTGCGACGATTGGGGCTGCGGCTGC 585 29 100.0 32 ............................. ACGCAGGATATTTCTTGGCCAATCTCGAACCT 524 29 100.0 32 ............................. GCTTCCATGATGTCGCCGTGGCTCACGGTGAT 463 29 100.0 32 ............................. CGGTCGAAACGCTGCTGGTCAAGACTCGCAAG 402 29 100.0 32 ............................. ATGCTCGGTGGCCCGTTCGGCATCGCCGTCGG 341 29 100.0 32 ............................. TACGCCACGCCATGCGGCCACCTCCCTTTTAC 280 29 100.0 32 ............................. ACCACGATCAATGAGGCGCAGCAGCAGATTGA 219 29 100.0 32 ............................. GCGGGTGAGGGTGATGCGCTCCTGCAGGGCTT 158 29 100.0 32 ............................. AATGCCACACCATTGTCGAACAATGTCAGTTC 97 29 100.0 32 ............................. AGGAGGCGGGCGGCACCACGCCGGAACCACAG 36 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 43 29 99.5 32 GTGTTCCCCGCAAGCGCGGGGATGATCCC # Left flank : AGGTGCGTCGAAATCGTAGTCGTTATA # Right flank : CAAAAGGA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCAAGCGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCAAGCGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [8.3-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //