Array 1 36046-35862 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZYA01000017.1 Bifidobacterium sp. MSTE12 contig00020, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ============================= ================== 36045 25 100.0 28 ......................... AACAACCCAAACTACCGACCCTGACGAC 35992 25 92.0 26 ..C...................G.. CGCCTCAAACTACCGACGCCCATGCT 35941 25 100.0 29 ......................... AACAACCCAAACTACCGACGCTTAGAGGG 35887 24 80.0 0 ..-..A.G......T..T....... | GG [35866] ========== ====== ====== ====== ========================= ============================= ================== 4 25 93.0 28 CATCTCACCGTCGGCAGATTGAAAA # Left flank : AGCTTCATCAGCACCTGTGCGGAAATCTCCTGAGGAGTCCACTTCTTGCCGTCGATCTCAACGGTCCAGTCAGTGCCCATGTGGCGCTTGACGGAGCTGATGGTGCGATCGACGTTGGTCACGGCCTGACGCTTGGCGACCTCGCCGACCAGAATCTCGCCGGACTTGCTGAATGCCACGACCGACGGAGTGGTGCGAGCGCCCTCGGCGTTCACGATAACGGTGGGCTGGCCACCTTCAAGAGTTGCGATGCAGGAATTGGTAGTACCCAAATCGATGCCAACTGCGCGTCCCATAACTTATCTCCTTTGCAGATTAGGTTCGCTATACGTTCTTTCGTTCTTCGCTCGAGTCCCGGATTGCCGTCTCTCGCGCTTTCCAAAACTTGAGCCTACACCACTCAACTTTTGAACGCAACTTTTTATTCCCGAATCCACAAAAATTCTTGAGCCACCTTCGCTCAACTTTGTCGATCCCCTCAATCTACCGACGCCCATGCT # Right flank : GGATGGGCGACCTGGATCAGCGGGTGATCTTCACTGTCTTGATGATCATCGCAATGGCGGCCAACATGGCCACTGCGATCGCGACGACGGCCACCGCGGTACCGGTCTCACCGAGCGGCGAGCCGTCGGCCTTCGGATTGTTGTTGACCTTGCCGGAAGCGATCACACCGTTCTTGTCGGCATTCTTGTCGGCGTTCTTGTCAGAAGAACCGGCGGCCGGAGCCTGGAAGTCGACGGTCACGCTCTTGCCGGACTGGCGTCCGGTGACGGTAAGCGTATATTCGTTGCCTTCGGCCACCTTGTCGAGTGCGATCGCGGTGGTCTGCGCGGTCTTGACTCGCACACCGGAGAGCGGAGTGGTGGAATCGGAAGCGGCGATCACATTGCCCGATTTGTCCTTCAGCTCATAGCTGAGCACGGCATCACCGTTGAAGCCCGTCGCGTCGGCGGCATACGAGCCGTTTTCGGTGGCGACCTTGACTTCGGCGTTGTTGGACAAT # Questionable array : NO Score: 5.21 # Score Detail : 1:0, 2:0, 3:3, 4:0.65, 5:0, 6:0.25, 7:-0.09, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CATCTCACCGTCGGCAGATTGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.70,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 1 141572-137873 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZYA01000037.1 Bifidobacterium sp. MSTE12 contig00012, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 141571 33 100.0 33 ................................. GTATTGAGAATATCGTAGCTATTACTGATTTTG 141505 33 100.0 34 ................................. CTTGAACTGGCGTTGCAATTCCGCGATGTCGTCG 141438 33 100.0 34 ................................. TCGTCATCTGTCCGGCAAGCGTCGTGAAGACCGC 141371 33 100.0 35 ................................. CTCGCCGAAGAGAACTGGTTCCGTCCTTCGGGCGA 141303 33 100.0 33 ................................. CGCTTCGGGGCGGTGGAGCTTCAGCAGGGTCTC 141237 33 100.0 35 ................................. CTTTCCGGTATATGAAAAGAACCCCTGCAACGCGT 141169 33 100.0 34 ................................. TGTTATCGGCGCGGGAAAGCGCGAAAACCGGCGC 141102 33 100.0 34 ................................. ACCGTGTAGGTCGCGGCATCCGGCGCGACGGCGA 141035 33 100.0 34 ................................. CAATACTCCATATGATGCTCGTATCTCGCTCCCG 140968 33 100.0 33 ................................. TCGTGAATACGTACTTTCACGTTATTGGCAACC 140902 33 100.0 33 ................................. ACGTCCACCGGCTTGAACACGTTATCCAAGGAG 140836 33 100.0 34 ................................. ATTGAGCACGTCGGCAGCGGTGAAATTGGACATG 140769 33 100.0 34 ................................. CATCCTCAGAATGCAGACGGTCGAAACGAAATGC 140702 33 100.0 34 ................................. TATGATGAAGTACATAAGGCCGTCGATAAGATGT 140635 33 100.0 33 ................................. AGCCACGAAGGTGACTTGGTAGCCAAACTGCTG 140569 33 100.0 34 ................................. TCCTGAATGGCCGCACCCAGATCGCCGAACATGC 140502 33 100.0 34 ................................. CAAGCAGTACCGTCAGAGCCTTGCCAGCCGGAAG 140435 33 100.0 33 ................................. ATCGCCCGGAACGTCGCCCGAGTGCACATTCAG 140369 33 100.0 34 ................................. GATGGTCGGCATGGTGCAGCAGTTGGCGCCGTTG 140302 33 100.0 34 ................................. GATGCTACCGCACGCATGCTGACTTTCGACGCCA 140235 33 100.0 33 ................................. GTCGAAGAAGATTATGGAGACTTTTGGAAGCGC 140169 33 100.0 33 ................................. AACAGCAACGCCCCGCAAATCAACATGAGCGGC 140103 33 100.0 33 ................................. AAGGACAAGGTGCAGGCGAACTCCGACGCCATC 140037 33 100.0 33 ................................. TCCACCTGATACAGACGGATATACACGTCTGCA 139971 33 100.0 34 ................................. ATCGAAGTAGACGCGGGTACCGAAAGCTTCGTCC 139904 33 100.0 34 ................................. TTCTAGGCATGGTCTGAGCAGTGCGGGGAATATG 139837 33 100.0 33 ................................. ATTAAGCGCGACTAACGCACAACGAAGTCTTTT 139771 33 100.0 34 ................................. GTAATCAGATGGCGGAAATGCAAATACGCAAGGA 139704 33 100.0 34 ................................. CTCCAGATCTTCCGCAGAACCGACGACACCGACG 139637 33 100.0 33 ................................. AGCGAAGGACTCCGGACAATCCGCCACGCACGC 139571 33 100.0 33 ................................. TTCAGGATGTGCATGTGAGTCTCCTTAGTTTCT 139505 33 100.0 34 ................................. CACATAGGCGGCAGTCTCAGCATCATCGGGATAG 139438 33 100.0 34 ................................. AGGTCAACAGTCACCCGCACCCCCTCCATCGCAG 139371 33 100.0 33 ................................. CCCTTCTCCACGACGCCTTGACCCTCTACTCGA 139305 33 100.0 34 ................................. ATCATCTGCTGTTGCCTTCCAATAAAATAAATGA 139238 33 100.0 33 ................................. AAGGTGTTGAGCGAAGCCGTGCGGTTGCGTTGC 139172 33 100.0 34 ................................. TTGACAAGGTACGTTTTGAAGACGCAGCCGATGA 139105 33 100.0 34 ................................. TTTTTTGAAAGGATAAGGCAATGAGCATTCCACT 139038 33 100.0 33 ................................. AAGATGATTGCGCATATATCGCCAAAAAAGCGA 138972 33 100.0 34 ................................. CTCTTCCAAGTGGCGTTTTATCGCAATGACCTGT 138905 33 100.0 34 ................................. TGGATCCCGAACTACGCCGCACAATATGCGGACC 138838 33 100.0 34 ................................. CGACTCTCACAATGGGACAAGAAGACACATGCTT 138771 33 100.0 33 ................................. AAAGCCATCCCCATTCACGGGGGTGGCTTTTTT 138705 33 100.0 34 ................................. TCTTTCTTACCGGGTACGGGAACGGGAACGGGGC 138638 33 100.0 33 ................................. GAGACGGCAACCGTCCGATATTTGCGTTGGGCG 138572 33 100.0 33 ................................. ATATCGTCATTTTCAGTCCAACTGACCTATGTG 138506 33 100.0 33 ................................. CTCATCCAATGCCTCTTCGACCCGGATCGCGTA 138440 33 100.0 34 ................................. ATGTGCCCAAGGGTCAACTGGCCATACGGGGTCG 138373 33 100.0 33 ................................. CGGACAGGTACCGGCATTTGAAGAAACTGCTCA 138307 33 100.0 34 ................................. AGCTTGATTTGTCGGTAGTCCGATAATCCAATAA 138240 33 100.0 35 ................................. TCATGTTCCATTGCCCTGAGGTTGAGGATAGCCCA 138172 33 100.0 34 ................................. ATCGATCGCTATTGCGCCACGACGATCGACTTCT 138105 33 100.0 35 ................................. TCGAATTCGTCTACTCCGGTAGCCCGTGGGTGCCG 138037 33 100.0 34 ................................. AAACGAATACCGGAACCGACATCAATATCATCAG 137970 33 100.0 33 ................................. ACGTTGGTCTGCCCGTTGAATCCCGACAGGGAG 137904 32 84.8 0 ....................T.A.-...A...C | ========== ====== ====== ====== ================================= =================================== ================== 56 33 99.7 34 GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT # Left flank : CTGCGGGGAAGAGACGGTTGCGTAACGTTGCGAAGACATGTATGAAATATGGGCAACGGGTGCAGAATAGCGTATTCGAGTGCTCGGTCACTTCATCGGATTATCTAACTTTAGTAAATGAAGTGATGAAAATCATGGATCAAGAAAAAGATAGCCTGCGCTTATATAAATTAGGGACAAAATATTCTGAGAAGATTGAACATTATGGTGTACAGCGGCATCTTCCTGTAGATGATGTGATGATGATTTAGACGCCGAGGCCTGTCGTTGTGCGAAGTGGAAGCTCTCATCGAATAAGGCAAGCTTCGCACCTGGATGGAACTTGGAATCGAAAAGTAAGTCGATTTTCCTTGGCTGTTTGATAATTTCAGAGAGAAGAATCGTTATTATTTTTTGGTAGAGTGATTAGAATAACGGGTTTTGACTTCAAACCCTGCTACTCTTGAACTTGTACGAAGGATAGATGTTCCACAATGTGAAACATGCTGTCCATCTGTGCA # Right flank : ATGATGGGAGCGGCCATGGGATTGCGTGAACGGCGTGAGCGTTGCGGGTTGACGTTGCTCCAGTTGGAAGCGTTGACCGGTATCGCCTTCACGCGGTTGAGCACGTTGGAGTGCAATGCGTCCGAGGCTCGCAACATGTATTTGGGTACGGCTCGGCGGATTGCCGACGCGTTGCATTGCAACGTGTTGGACTTGTATCCGGATGAGGATGCGTGGCGTGGCGGCGTGTCCGCCGGTGTGACCGGGTTGAGGAGGATTCGTCGGGAACGGCATTTGACGCAGCGGATGCTGTCAGCCTTGACGGGTATTCCCCAGCCTAATATTTCTTGGTTTGAGACCGGGTATCGTCCCGTGTCTCAGATGTATTTGGATACTGCGCGGCGCCTGTCGGAGGCGTTGCAATGCGACCCTGTTGATTTTCTAATTGATTGAAAGGATATTGTGATGAAGGCTGAGGTTGTTATTGTTACGAGGTTGGAGCGTCATGGCGGGACGATGCT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.10,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 1653-1829 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZYA01000035.1 Bifidobacterium sp. MSTE12 contig00009, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== =========================== ================== 1653 24 100.0 27 ........................ GTAAAACAGTCGAAACCACGTTGCGAA 1704 24 95.8 27 .............T.......... AACAGGGTGGCGGATCCGAGGTGCGGA 1755 24 91.7 27 ..G.T................... GTCAGGACGTCAAAACCGGGGCGCAGT 1806 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== =========================== ================== 4 24 96.9 27 TGTCCGATTCTGGAGAATCGGACA # Left flank : GCAGACGCCCGCCGGCTTGATGCGTCCGAAAGCCCCGCGCGCAGGTTCGCGCATTCTATTGGAGCGGATTACGCCGATTTGGAGTCGTTTGGGATTCCTAAGCAAGGTTACTGCGCGCAATATCTTCCGTTTCAAGTCGCGCCTGGTCATGACGGTCGGAGGCGTTGCCGGATGCACGGCGTTGATCATATGCGGGCTTGTGATCAACGACACCGTGGCGGAACTTGGCGTCAAACAGTATCGCGATATCTACCGATACGATGTGATGGTCGTTGCGAACGATACCGATGCGGATGCAATGCGGGCGAAGTTGCGAGCGGACGGGCGTACGACTTCGACCATGGACATACGTGTCGAATCCGGTGATCTGGCGAACGATGAGGGAAGCGAGGGCATCCAACTTGTGGTGGTGCCCGAGGAGCATCTGGATGAACTGGGCGAGATGGTTACGCTCAAGCCGGTCGCATCCGGATGGGATGGTGTGCGCAAGTTCTTCGGAC # Right flank : AAACGAAGCGGCTCGAAGGCGGTGTTGGGCGACAGTGGGGTGATCGTGTCGCAGTCGGCGGCCAACGCTCTGGGCGTTAAGGCCGGCGATACGGTGAATCTCACCAACGGCGATGGCATTCAGGCCAAGGCCAAGGTGAGCGAGGTGACGCGTAACCTCATAGGTTCCGACATCTACGTGAGTGAATCGTATTATGGCAAGCTGTTCGGTTCAGGGTCCGGAATGTCCGATTCTCCAGAATCGGACAAATCGGATTCCGGCGGCTCCTTGACCTGGAACGCCGTATACGCCAAGCTCACCGGATCCGACGATGCGCAGATCGCATACGCCAACACCCTCGAAAAGGATGATTCGGTGATGAAGACGGTGTGCTGCGCGGACATGGCCGCCAGCTTCAAATTTGACCTCATGGGCGCGGTGGTCGCCTTGATCGTTGCGCTTGCGGGCGGTCTGGCGCTTGTAGTGCTGTTCACGCTTGCCAATACGAATGTGTCGGAACG # Questionable array : NO Score: 2.55 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:-0.15, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTCCGATTCTGGAGAATCGGACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.00,-3.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 2 59718-59541 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZYA01000035.1 Bifidobacterium sp. MSTE12 contig00009, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== =========================== ================== 59717 24 100.0 27 ........................ CTCGGAGGCACATGCAGGCATCCTACA 59666 24 95.8 27 ...................A.... AACAGATACGCTCCGCTTCCCCACAGT 59615 24 100.0 27 ........................ TGCAAGGGCGTGTGCGGGTACCTTATG 59564 24 91.7 0 ...........GG........... | ========== ====== ====== ====== ======================== =========================== ================== 4 24 96.9 27 TGTCCGATTCTCCAGAATCGGACA # Left flank : CCTCAACCAACTGTTCGCTGGCCTCGGCGCCGACGTCAGCAAGTAGCAGGGTGTCTTCGACATCCTCCCAATCGGACTCGGAAAGATGGTCCTTGGCGAGGATGTTGAACAATACCTTGCCAAAAGGATTGCCTGACTTGGCCAGCTTGGCCTTGAGACGCTGAATGCGCGAGCCCGTGGACTCCGGGGTTTCCACTGCCGGCGCGGCCTTCGCCTCTTCCGTCGAGGCGATCGGAGGGACTTCGGCCGCTACTTCCTGGACTTCCTCGGCTTCTTGGGCCGTCTCAGCTTTCTGGACTTCTTGGGCAAGACGCTTATCAGCCTTGGCCTTGGCATCCTCAACGGACTTGTCTACGGCTTTCTTGCGCGACTTGCCGAACCACCAACCACCAAGCAGCAACAGCGCTGCAATCACAACAATGGCGACAATCGCGATAATCACATTGGTATCCATAATCCCAGCCTAAAAACCGCAACGGACACATCGCCCCATCCTCACC # Right flank : CTCGGAGGAGCTCATCCACGGGGCGTGAAAAACTGGACAGCATGGCCAGTACATCCAGGATGACGTCATTTCAAAGACGTGAGCAGCTCATCGAAATCGGTCGGTCGCTGTTCGCGTCGAAGGGGTTCGAAGCGGTAAGCGTAGAGGAGATTGCCGCGACCGCGAAGGTATCGAAGCCCATCGTCTATGAACATTTCGGCGGCAAGGAAGGCCTGTACGCCGTAGTGGTGGACCGTGAGATGCGCGCACTCACCGACACACTCGTCAACGCGCTGTCCGACCAACAGGCGCACCCTCGTCAAATCGTGGAACGTGCCGCACTGGCCCTGCTCACCTATGTGGAGGAGAACGCCAAAGGATTTCGCGTGCTCACCCGAGATTCGCCGAAAACCGATCCGGCCGGATCGTTCAGCTCACTGCTCGGCGATATCAGCATTCGCGTGGAAGACCTGCTCACCGAATCGTTCAAACGCCAGCATCTGCCCGCCAAGGGCGTGCCA # Questionable array : NO Score: 2.55 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:-0.15, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTCCGATTCTCCAGAATCGGACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.00,-3.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //