Array 1 1-1168 **** Predicted by CRISPRDetect 2.4 *** >NZ_AURQ01000028.1 Salmonella enterica subsp. enterica serovar Heidelberg str. CFSAN002059 CFSAN002059_21, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1 27 93.1 32 --........................... CCGCTGACGCACTGGATCAACCTGACGCAACG 60 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 121 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 182 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 243 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 304 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 365 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 426 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 487 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 548 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 609 29 100.0 32 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATT 670 29 65.5 13 ..............GA..C.TTCC.G.GC ACGTTACTCGATC Deletion [712] 712 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 773 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 834 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 895 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 956 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 1017 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 1078 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 1139 29 96.6 0 A............................ | A [1165] ========== ====== ====== ====== ============================= ================================ ================== 20 29 97.2 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [3-3] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 255729-256854 **** Predicted by CRISPRDetect 2.4 *** >NZ_AURQ01000019.1 Salmonella enterica subsp. enterica serovar Heidelberg str. CFSAN002059 CFSAN002059_19, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 255729 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 255790 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 255851 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 255912 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 255973 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 256034 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 256095 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 256156 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 256217 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 256278 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 256339 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 256400 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 256461 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 256522 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 256583 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 256644 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 256705 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 256766 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 256827 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 273113-273452 **** Predicted by CRISPRDetect 2.4 *** >NZ_AURQ01000019.1 Salmonella enterica subsp. enterica serovar Heidelberg str. CFSAN002059 CFSAN002059_19, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 273113 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 273174 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 273235 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 273296 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 273363 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 273424 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 6 29 100.0 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTAAATCCATATACGGGCCTTGCGGGTTTGCCGTGTTCCCCGCGCCAGCGGGGATAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //